LdBPK_343830.1 | Peptidase family C78, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005634      

  • Curated_GO_Components:  nucleus      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_343830.1OTHER0.9997050.0001940.000101
No Results

  • Fasta :-

    >LdBPK_343830.1 MEDVVTGVAGTASYPLHVLQRNKKTVGIVGADALAALPMAGSSCTHHLVTSATELKPFLT DSPAAEVLFKWCARVSCSLSRTLKRHCLVVKNVSRGVAISALLEGVRSDDSTVETVWADV ERSAELWKTPFTGDSTETLHVYMMSVPEVPDTISNTLHDMPGVSAAVPECSLVTTRVLLG DSASEIVASIRQLFHQFLGTEAESLTATEVCWPASMLFPVNVHTRDDARRRAEHAALRLP YQGLLHHEDAIQAWSTWDDLRRQHEAKDASVFRTGAAWERHLATSPHRDLAPASAPSIPG AETLLVSGAYDYYHYRVDGFRDDGWGCAYRSLQTVLSWFQHAGLLRAAIPSIRRIQEILY QVDPDKASKRAFVGSRDWIGSFEIMLVLQQYFPGLECTIKRLERGQDLDTDSSVQLLLIE HFRSPLAAPVMIGGSSYAHTILGLHMNVHTMEAQYLILDPHYSAYPTQIKTAVRKGYVGW KEASKFFEAGCWYNLCIPRVDLFDPR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_343830.1.fa Sequence name : LdBPK_343830 Sequence length : 506 VALUES OF COMPUTED PARAMETERS Coef20 : 3.452 CoefTot : 0.000 ChDiff : -9 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.359 1.465 0.208 0.597 MesoH : -0.053 0.546 -0.229 0.260 MuHd_075 : 17.204 10.936 5.596 2.615 MuHd_095 : 22.184 21.573 6.569 4.351 MuHd_100 : 23.312 22.557 7.048 4.929 MuHd_105 : 19.268 19.221 5.390 4.508 Hmax_075 : 11.317 14.817 2.571 5.437 Hmax_095 : 17.200 21.900 3.456 6.280 Hmax_100 : 15.400 18.500 2.738 5.780 Hmax_105 : 12.700 12.100 1.990 4.630 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9394 0.0606 DFMC : 0.9590 0.0410
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 506 LdBPK_343830.1 MEDVVTGVAGTASYPLHVLQRNKKTVGIVGADALAALPMAGSSCTHHLVTSATELKPFLTDSPAAEVLFKWCARVSCSLS 80 RTLKRHCLVVKNVSRGVAISALLEGVRSDDSTVETVWADVERSAELWKTPFTGDSTETLHVYMMSVPEVPDTISNTLHDM 160 PGVSAAVPECSLVTTRVLLGDSASEIVASIRQLFHQFLGTEAESLTATEVCWPASMLFPVNVHTRDDARRRAEHAALRLP 240 YQGLLHHEDAIQAWSTWDDLRRQHEAKDASVFRTGAAWERHLATSPHRDLAPASAPSIPGAETLLVSGAYDYYHYRVDGF 320 RDDGWGCAYRSLQTVLSWFQHAGLLRAAIPSIRRIQEILYQVDPDKASKRAFVGSRDWIGSFEIMLVLQQYFPGLECTIK 400 RLERGQDLDTDSSVQLLLIEHFRSPLAAPVMIGGSSYAHTILGLHMNVHTMEAQYLILDPHYSAYPTQIKTAVRKGYVGW 480 KEASKFFEAGCWYNLCIPRVDLFDPR 560 .......................P........................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .......................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_343830.1 21 PLHVLQR|NK 0.102 . LdBPK_343830.1 23 HVLQRNK|KT 0.062 . LdBPK_343830.1 24 VLQRNKK|TV 0.578 *ProP* LdBPK_343830.1 56 TSATELK|PF 0.060 . LdBPK_343830.1 70 AAEVLFK|WC 0.064 . LdBPK_343830.1 74 LFKWCAR|VS 0.084 . LdBPK_343830.1 81 VSCSLSR|TL 0.077 . LdBPK_343830.1 84 SLSRTLK|RH 0.122 . LdBPK_343830.1 85 LSRTLKR|HC 0.182 . LdBPK_343830.1 91 RHCLVVK|NV 0.093 . LdBPK_343830.1 95 VVKNVSR|GV 0.116 . LdBPK_343830.1 107 ALLEGVR|SD 0.095 . LdBPK_343830.1 122 VWADVER|SA 0.171 . LdBPK_343830.1 128 RSAELWK|TP 0.071 . LdBPK_343830.1 176 CSLVTTR|VL 0.070 . LdBPK_343830.1 191 EIVASIR|QL 0.102 . LdBPK_343830.1 225 PVNVHTR|DD 0.111 . LdBPK_343830.1 229 HTRDDAR|RR 0.072 . LdBPK_343830.1 230 TRDDARR|RA 0.201 . LdBPK_343830.1 231 RDDARRR|AE 0.170 . LdBPK_343830.1 238 AEHAALR|LP 0.093 . LdBPK_343830.1 261 STWDDLR|RQ 0.083 . LdBPK_343830.1 262 TWDDLRR|QH 0.168 . LdBPK_343830.1 267 RRQHEAK|DA 0.148 . LdBPK_343830.1 273 KDASVFR|TG 0.113 . LdBPK_343830.1 280 TGAAWER|HL 0.103 . LdBPK_343830.1 288 LATSPHR|DL 0.093 . LdBPK_343830.1 316 YDYYHYR|VD 0.088 . LdBPK_343830.1 321 YRVDGFR|DD 0.130 . LdBPK_343830.1 330 GWGCAYR|SL 0.195 . LdBPK_343830.1 346 QHAGLLR|AA 0.120 . LdBPK_343830.1 353 AAIPSIR|RI 0.097 . LdBPK_343830.1 354 AIPSIRR|IQ 0.087 . LdBPK_343830.1 366 YQVDPDK|AS 0.066 . LdBPK_343830.1 369 DPDKASK|RA 0.066 . LdBPK_343830.1 370 PDKASKR|AF 0.249 . LdBPK_343830.1 376 RAFVGSR|DW 0.133 . LdBPK_343830.1 400 GLECTIK|RL 0.071 . LdBPK_343830.1 401 LECTIKR|LE 0.137 . LdBPK_343830.1 404 TIKRLER|GQ 0.231 . LdBPK_343830.1 423 LLIEHFR|SP 0.129 . LdBPK_343830.1 470 AYPTQIK|TA 0.060 . LdBPK_343830.1 474 QIKTAVR|KG 0.077 . LdBPK_343830.1 475 IKTAVRK|GY 0.089 . LdBPK_343830.1 481 KGYVGWK|EA 0.079 . LdBPK_343830.1 485 GWKEASK|FF 0.076 . LdBPK_343830.1 499 YNLCIPR|VD 0.064 . LdBPK_343830.1 506 VDLFDPR|-- 0.083 . ____________________________^_________________

  • Fasta :-

    >LdBPK_343830.1 ATGGAGGATGTCGTGACCGGCGTTGCCGGCACGGCCTCCTACCCGCTTCATGTCTTGCAA CGCAACAAGAAGACCGTCGGCATCGTCGGCGCGGACGCGCTGGCTGCATTGCCCATGGCA GGTAGTAGCTGCACACATCATCTGGTCACCTCTGCCACCGAACTGAAGCCGTTCCTTACA GATTCGCCGGCAGCGGAGGTGCTGTTCAAGTGGTGCGCGCGCGTCAGCTGCTCTCTGTCC CGCACGCTAAAGCGTCACTGTCTTGTTGTGAAGAATGTGTCGCGCGGCGTCGCAATCTCT GCACTTCTCGAGGGGGTCCGCAGCGACGATAGCACCGTAGAAACGGTGTGGGCAGACGTT GAGCGCAGCGCGGAGCTGTGGAAAACGCCGTTCACAGGTGACAGCACCGAAACCCTGCAC GTGTACATGATGAGCGTGCCGGAGGTGCCAGATACCATTTCCAACACGCTACATGATATG CCCGGCGTCTCTGCCGCGGTGCCGGAGTGCAGTCTCGTCACCACCCGCGTCCTTCTTGGG GACTCCGCTAGTGAAATCGTGGCATCGATTCGGCAGCTTTTCCACCAGTTTCTCGGCACT GAGGCGGAGAGCCTCACTGCCACAGAGGTGTGCTGGCCTGCTTCCATGCTCTTCCCTGTC AATGTGCACACCCGCGACGACGCGAGGCGGCGGGCAGAGCACGCGGCCCTGCGGCTGCCG TATCAGGGTCTTCTGCACCATGAAGATGCCATTCAAGCGTGGTCCACGTGGGACGACCTG CGCCGACAGCACGAGGCAAAGGACGCTTCCGTCTTTCGTACTGGCGCGGCCTGGGAGCGG CATCTCGCCACCAGCCCGCACCGCGACCTCGCTCCTGCATCCGCACCCTCCATTCCGGGG GCGGAGACGCTTTTGGTGAGCGGCGCCTACGATTACTACCACTACCGCGTCGACGGCTTC CGCGACGACGGCTGGGGCTGTGCCTACCGTAGCCTGCAAACGGTTCTTTCCTGGTTTCAG CACGCCGGTCTCCTACGCGCCGCTATTCCGTCGATCCGGCGCATTCAGGAGATTCTCTAC CAGGTGGACCCGGACAAGGCGAGCAAGAGAGCCTTCGTCGGCTCACGTGACTGGATCGGC AGCTTCGAGATTATGCTGGTGCTGCAGCAGTATTTTCCCGGTCTGGAGTGCACCATCAAG CGTCTGGAGAGAGGACAAGACCTGGACACGGACTCCTCGGTGCAGTTGCTTCTGATCGAG CACTTCCGCAGCCCACTAGCCGCGCCGGTGATGATAGGAGGCAGCAGCTACGCGCACACG ATCCTCGGCCTCCACATGAACGTCCACACAATGGAGGCGCAGTACCTGATCCTCGACCCG CACTACTCCGCCTACCCAACACAGATCAAGACGGCTGTCAGGAAGGGCTACGTGGGGTGG AAAGAGGCCTCAAAGTTTTTTGAGGCGGGCTGCTGGTACAACTTGTGCATCCCACGCGTT GACCTGTTCGATCCTCGATGA
  • Download Fasta

  • Fasta :-

    MEDVVTGVAGTASYPLHVLQRNKKTVGIVGADALAALPMAGSSCTHHLVTSATELKPFLT DSPAAEVLFKWCARVSCSLSRTLKRHCLVVKNVSRGVAISALLEGVRSDDSTVETVWADV ERSAELWKTPFTGDSTETLHVYMMSVPEVPDTISNTLHDMPGVSAAVPECSLVTTRVLLG DSASEIVASIRQLFHQFLGTEAESLTATEVCWPASMLFPVNVHTRDDARRRAEHAALRLP YQGLLHHEDAIQAWSTWDDLRRQHEAKDASVFRTGAAWERHLATSPHRDLAPASAPSIPG AETLLVSGAYDYYHYRVDGFRDDGWGCAYRSLQTVLSWFQHAGLLRAAIPSIRRIQEILY QVDPDKASKRAFVGSRDWIGSFEIMLVLQQYFPGLECTIKRLERGQDLDTDSSVQLLLIE HFRSPLAAPVMIGGSSYAHTILGLHMNVHTMEAQYLILDPHYSAYPTQIKTAVRKGYVGW KEASKFFEAGCWYNLCIPRVDLFDPR

    No Results
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No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_343830.1111 SRSDDSTVET0.995unspLdBPK_343830.1285 SHLATSPHRD0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India