LdBPK_351970.1 | hypothetical protein, conserved

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0030964      GO:0005739      

  • Curated_GO_Components:  NADH dehydrogenase complex      mitochondrion      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_351970.1mTP0.1532570.0011930.845550CS pos: 23-24. TRF-KW. Pr: 0.1445
No Results

  • Fasta :-

    >LdBPK_351970.1 MLRRSSVVLARFQPYSMAVQTRFKWRHKETDRWRRLMDATCFQVDWLGQTAGPNFAQYSG HWTHVITCAHVITPWDYPNYYPPQGPTRFVSHITLADTMTQIRLVSMQGNAVYKHFTSNQ HVFVHSNPRLDLCVLHPEQNLKRSGEMKMMWMQNEGYILRPRLEINETLKVGDHVWVYGM SAHESLFDEEKGPEPLMIPTGVRARVHTVTREHFFLDTTALEDNPDRGRIQMGMCGSVVM RNGKCVGMLTATVHEESDCKELAGTAMCTYSSDIFEFLLEVEKQMKNPVARQSQEETRFE QRRRAEGGVTKEYKHWELDESRTARHIPVPVSLWHMEERWVTEEDYMNSAVFGRSGAFNQ ETQESALGYDMNTAKTNGDRPGDIDSFMSTTTTGKPVMQGERKDYSPTGVYANVEEFKNK DVWDYNVSSEMRSLFNETVDSKDAESLNMMRKSLENIRAQRAMEKMKETVMNRTESGFDP LKSCGHYGGSADAGAANFSPEYASAHKGGGDAYSYAQAAQQAAREQPEDRASPASSPPLS PPPPNESVIDRKKRERREAEAKYQKELRRRHGQRAVPFGDEDLGGFWERH
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_351970.1.fa Sequence name : LdBPK_351970 Sequence length : 590 VALUES OF COMPUTED PARAMETERS Coef20 : 4.855 CoefTot : 0.352 ChDiff : -7 ZoneTo : 28 KR : 7 DE : 0 CleavSite : 13 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.871 0.824 0.010 0.401 MesoH : -0.211 -0.010 -0.388 0.190 MuHd_075 : 21.200 15.676 5.218 6.426 MuHd_095 : 32.777 11.037 5.226 5.740 MuHd_100 : 29.669 14.047 5.670 5.560 MuHd_105 : 27.467 14.525 6.218 6.258 Hmax_075 : 7.467 8.750 -0.265 3.838 Hmax_095 : 11.550 8.313 -0.008 3.036 Hmax_100 : 16.500 15.700 2.877 5.240 Hmax_105 : 14.400 16.700 2.318 5.680 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0474 0.9526 DFMC : 0.0653 0.9347 This protein is probably imported in mitochondria. f(Ser) = 0.1071 f(Arg) = 0.1786 CMi = 0.33482 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 590 LdBPK_351970.1 MLRRSSVVLARFQPYSMAVQTRFKWRHKETDRWRRLMDATCFQVDWLGQTAGPNFAQYSGHWTHVITCAHVITPWDYPNY 80 YPPQGPTRFVSHITLADTMTQIRLVSMQGNAVYKHFTSNQHVFVHSNPRLDLCVLHPEQNLKRSGEMKMMWMQNEGYILR 160 PRLEINETLKVGDHVWVYGMSAHESLFDEEKGPEPLMIPTGVRARVHTVTREHFFLDTTALEDNPDRGRIQMGMCGSVVM 240 RNGKCVGMLTATVHEESDCKELAGTAMCTYSSDIFEFLLEVEKQMKNPVARQSQEETRFEQRRRAEGGVTKEYKHWELDE 320 SRTARHIPVPVSLWHMEERWVTEEDYMNSAVFGRSGAFNQETQESALGYDMNTAKTNGDRPGDIDSFMSTTTTGKPVMQG 400 ERKDYSPTGVYANVEEFKNKDVWDYNVSSEMRSLFNETVDSKDAESLNMMRKSLENIRAQRAMEKMKETVMNRTESGFDP 480 LKSCGHYGGSADAGAANFSPEYASAHKGGGDAYSYAQAAQQAAREQPEDRASPASSPPLSPPPPNESVIDRKKRERREAE 560 AKYQKELRRRHGQRAVPFGDEDLGGFWERH 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .........................................................................P..P... 560 .............................. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LdBPK_351970.1 3 ----MLR|RS 0.092 . LdBPK_351970.1 4 ---MLRR|SS 0.156 . LdBPK_351970.1 11 SSVVLAR|FQ 0.103 . LdBPK_351970.1 22 SMAVQTR|FK 0.164 . LdBPK_351970.1 24 AVQTRFK|WR 0.064 . LdBPK_351970.1 26 QTRFKWR|HK 0.135 . LdBPK_351970.1 28 RFKWRHK|ET 0.072 . LdBPK_351970.1 32 RHKETDR|WR 0.075 . LdBPK_351970.1 34 KETDRWR|RL 0.091 . LdBPK_351970.1 35 ETDRWRR|LM 0.406 . LdBPK_351970.1 88 PPQGPTR|FV 0.196 . LdBPK_351970.1 103 DTMTQIR|LV 0.138 . LdBPK_351970.1 114 QGNAVYK|HF 0.080 . LdBPK_351970.1 129 FVHSNPR|LD 0.079 . LdBPK_351970.1 142 HPEQNLK|RS 0.072 . LdBPK_351970.1 143 PEQNLKR|SG 0.321 . LdBPK_351970.1 148 KRSGEMK|MM 0.095 . LdBPK_351970.1 160 NEGYILR|PR 0.074 . LdBPK_351970.1 162 GYILRPR|LE 0.069 . LdBPK_351970.1 170 EINETLK|VG 0.061 . LdBPK_351970.1 191 SLFDEEK|GP 0.065 . LdBPK_351970.1 203 MIPTGVR|AR 0.067 . LdBPK_351970.1 205 PTGVRAR|VH 0.088 . LdBPK_351970.1 211 RVHTVTR|EH 0.086 . LdBPK_351970.1 227 LEDNPDR|GR 0.092 . LdBPK_351970.1 229 DNPDRGR|IQ 0.075 . LdBPK_351970.1 241 CGSVVMR|NG 0.104 . LdBPK_351970.1 244 VVMRNGK|CV 0.253 . LdBPK_351970.1 260 HEESDCK|EL 0.057 . LdBPK_351970.1 283 FLLEVEK|QM 0.052 . LdBPK_351970.1 286 EVEKQMK|NP 0.061 . LdBPK_351970.1 291 MKNPVAR|QS 0.162 . LdBPK_351970.1 298 QSQEETR|FE 0.092 . LdBPK_351970.1 302 ETRFEQR|RR 0.085 . LdBPK_351970.1 303 TRFEQRR|RA 0.325 . LdBPK_351970.1 304 RFEQRRR|AE 0.189 . LdBPK_351970.1 311 AEGGVTK|EY 0.065 . LdBPK_351970.1 314 GVTKEYK|HW 0.071 . LdBPK_351970.1 322 WELDESR|TA 0.084 . LdBPK_351970.1 325 DESRTAR|HI 0.324 . LdBPK_351970.1 339 LWHMEER|WV 0.165 . LdBPK_351970.1 354 NSAVFGR|SG 0.169 . LdBPK_351970.1 375 YDMNTAK|TN 0.077 . LdBPK_351970.1 380 AKTNGDR|PG 0.078 . LdBPK_351970.1 395 STTTTGK|PV 0.091 . LdBPK_351970.1 402 PVMQGER|KD 0.064 . LdBPK_351970.1 403 VMQGERK|DY 0.112 . LdBPK_351970.1 418 ANVEEFK|NK 0.063 . LdBPK_351970.1 420 VEEFKNK|DV 0.120 . LdBPK_351970.1 432 NVSSEMR|SL 0.155 . LdBPK_351970.1 442 NETVDSK|DA 0.074 . LdBPK_351970.1 451 ESLNMMR|KS 0.072 . LdBPK_351970.1 452 SLNMMRK|SL 0.207 . LdBPK_351970.1 458 KSLENIR|AQ 0.096 . LdBPK_351970.1 461 ENIRAQR|AM 0.289 . LdBPK_351970.1 465 AQRAMEK|MK 0.076 . LdBPK_351970.1 467 RAMEKMK|ET 0.074 . LdBPK_351970.1 473 KETVMNR|TE 0.074 . LdBPK_351970.1 482 SGFDPLK|SC 0.092 . LdBPK_351970.1 507 EYASAHK|GG 0.070 . LdBPK_351970.1 524 AAQQAAR|EQ 0.085 . LdBPK_351970.1 530 REQPEDR|AS 0.089 . LdBPK_351970.1 551 NESVIDR|KK 0.105 . LdBPK_351970.1 552 ESVIDRK|KR 0.081 . LdBPK_351970.1 553 SVIDRKK|RE 0.077 . LdBPK_351970.1 554 VIDRKKR|ER 0.551 *ProP* LdBPK_351970.1 556 DRKKRER|RE 0.085 . LdBPK_351970.1 557 RKKRERR|EA 0.722 *ProP* LdBPK_351970.1 562 RREAEAK|YQ 0.073 . LdBPK_351970.1 565 AEAKYQK|EL 0.061 . LdBPK_351970.1 568 KYQKELR|RR 0.093 . LdBPK_351970.1 569 YQKELRR|RH 0.122 . LdBPK_351970.1 570 QKELRRR|HG 0.128 . LdBPK_351970.1 574 RRRHGQR|AV 0.187 . LdBPK_351970.1 589 LGGFWER|H- 0.102 . ____________________________^_________________

  • Fasta :-

    >LdBPK_351970.1 ATGCTGCGCCGCAGCTCTGTCGTGCTGGCGAGGTTCCAGCCGTACTCGATGGCGGTGCAA ACCCGGTTTAAGTGGCGGCACAAGGAGACGGACCGATGGCGGCGGCTGATGGACGCGACG TGCTTCCAAGTCGACTGGCTCGGCCAGACGGCCGGCCCGAACTTCGCGCAGTACAGCGGG CACTGGACGCACGTCATCACCTGCGCGCACGTGATCACGCCGTGGGACTACCCCAACTAC TACCCCCCGCAGGGGCCAACCCGATTTGTCTCGCACATTACTCTGGCGGACACCATGACA CAGATTCGGCTCGTCTCGATGCAGGGCAATGCCGTGTACAAGCATTTCACGTCAAATCAA CACGTCTTCGTGCATTCGAACCCGCGGCTGGACCTGTGCGTCCTGCATCCGGAGCAAAAT CTGAAGCGCAGTGGCGAGATGAAGATGATGTGGATGCAGAACGAAGGGTACATTTTACGT CCGCGGCTTGAGATCAACGAAACGCTGAAGGTCGGCGATCACGTCTGGGTGTACGGCATG TCGGCGCATGAGTCGCTGTTTGACGAGGAAAAGGGGCCAGAGCCTCTCATGATCCCTACC GGCGTCCGCGCTCGCGTGCACACCGTCACGCGCGAGCACTTCTTTCTGGACACAACGGCG CTTGAGGACAACCCAGATCGTGGCCGCATCCAGATGGGCATGTGCGGCTCTGTCGTGATG CGCAACGGCAAATGTGTGGGCATGCTGACGGCGACGGTGCACGAAGAGAGCGACTGTAAA GAGCTCGCAGGGACGGCCATGTGCACCTACTCGTCCGACATCTTCGAGTTCCTGCTGGAG GTGGAGAAGCAAATGAAGAACCCCGTCGCGCGTCAGAGCCAGGAGGAGACCCGCTTTGAG CAGCGGCGCCGCGCCGAGGGGGGCGTGACGAAGGAGTACAAGCACTGGGAGCTGGACGAG AGCCGCACGGCCCGCCACATCCCTGTCCCTGTTTCGCTCTGGCATATGGAGGAGAGGTGG GTGACGGAGGAGGATTACATGAACAGCGCCGTCTTTGGCCGTAGCGGCGCCTTCAACCAA GAAACACAGGAGAGCGCGCTGGGCTACGACATGAACACCGCCAAGACGAACGGCGACCGC CCAGGTGACATCGACTCCTTCATGTCAACCACGACGACCGGCAAGCCTGTAATGCAAGGC GAGCGGAAGGACTACAGCCCGACCGGCGTGTACGCGAACGTGGAGGAGTTCAAGAACAAG GATGTGTGGGACTACAACGTGAGCTCCGAGATGCGCTCTCTGTTCAACGAAACAGTCGAC AGCAAGGACGCTGAGAGCCTCAACATGATGCGCAAGTCGCTTGAGAACATCCGTGCGCAG CGGGCGATGGAGAAGATGAAGGAGACCGTGATGAACCGCACGGAGTCGGGCTTCGATCCG CTGAAGAGCTGCGGCCACTACGGCGGCAGCGCCGACGCCGGGGCTGCCAACTTCAGCCCA GAGTACGCTTCAGCCCACAAAGGTGGTGGCGACGCCTACAGCTACGCGCAAGCAGCTCAG CAGGCGGCGCGTGAGCAGCCGGAGGACCGCGCATCGCCTGCGTCGTCTCCGCCGCTGTCG CCGCCGCCGCCAAATGAGTCCGTCATAGATCGCAAGAAGCGAGAGCGACGCGAGGCGGAG GCCAAGTATCAGAAGGAGCTGCGCCGCCGTCATGGGCAGCGCGCCGTTCCCTTCGGCGAC GAGGATCTCGGCGGCTTCTGGGAGCGGCACTGA
  • Download Fasta

  • Fasta :-

    MLRRSSVVLARFQPYSMAVQTRFKWRHKETDRWRRLMDATCFQVDWLGQTAGPNFAQYSG HWTHVITCAHVITPWDYPNYYPPQGPTRFVSHITLADTMTQIRLVSMQGNAVYKHFTSNQ HVFVHSNPRLDLCVLHPEQNLKRSGEMKMMWMQNEGYILRPRLEINETLKVGDHVWVYGM SAHESLFDEEKGPEPLMIPTGVRARVHTVTREHFFLDTTALEDNPDRGRIQMGMCGSVVM RNGKCVGMLTATVHEESDCKELAGTAMCTYSSDIFEFLLEVEKQMKNPVARQSQEETRFE QRRRAEGGVTKEYKHWELDESRTARHIPVPVSLWHMEERWVTEEDYMNSAVFGRSGAFNQ ETQESALGYDMNTAKTNGDRPGDIDSFMSTTTTGKPVMQGERKDYSPTGVYANVEEFKNK DVWDYNVSSEMRSLFNETVDSKDAESLNMMRKSLENIRAQRAMEKMKETVMNRTESGFDP LKSCGHYGGSADAGAANFSPEYASAHKGGGDAYSYAQAAQQAAREQPEDRASPASSPPLS PPPPNESVIDRKKRERREAEAKYQKELRRRHGQRAVPFGDEDLGGFWERH

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_351970.1346 YTEEDYMNSA0.993unspLdBPK_351970.1346 YTEEDYMNSA0.993unspLdBPK_351970.1346 YTEEDYMNSA0.993unspLdBPK_351970.1453 SMMRKSLENI0.991unspLdBPK_351970.1476 SNRTESGFDP0.996unspLdBPK_351970.1532 SEDRASPASS0.996unspLdBPK_351970.16 SLRRSSVVLA0.995unspLdBPK_351970.1293 SVARQSQEET0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India