LdBPK_352460.1 | ubiquitin hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_352460.1OTHER0.9999920.0000020.000005
No Results

  • Fasta :-

    >LdBPK_352460.1 MTTVAEKKSTESVDSFSDKGLFSSRALRLEPQAPSMQLSGSAEVTKASSSSTPIRSSAST TVKTVSALSIARLHAAPIPLRNFGATCYLNSVVQCLLCTPGLLRTLNIERQRIVREWEGR RRFEEKRKPDDAQRRSCAEHKAPATSSLIDLGTARPAHHIAVQQLLLSLKAACAECNNEF SSNGQKDAHEFLITLLGVIDKEVCRSKPGNQETFKDFEDEKKSDVYARWVSWMQQENDST VYDFFGGITGCTVKCSSCELTSYRFEVLLHISLPISYRSRSQGGGTDIRLPDGELDGKAK PKGVAAVDELLREMFFSERGESLNGPMQVTCDRCKQLRDKRIWYSMEYWPPILVLHLKRF NNAGVKNETAVVFPYTFHPHRYVKYQLYGVCCHRGTCSSGHYTAYTYVQEDDKKAVVRKK APTVAAFSDFYNPSLKGTQSDRIFSPQTLPRRGGVGIFGWFDGVSIGNGDNNARASSEAL SHKGNGRADGKDRARSAGRTAKAGKWYLCNDKNITEVSAPDVLSMTKEAYILFYRRVDDG DVMVI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_352460.1.fa Sequence name : LdBPK_352460 Sequence length : 545 VALUES OF COMPUTED PARAMETERS Coef20 : 3.696 CoefTot : 0.141 ChDiff : 14 ZoneTo : 5 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.135 1.359 0.311 0.571 MesoH : 0.037 0.414 -0.160 0.165 MuHd_075 : 8.878 6.750 3.418 2.268 MuHd_095 : 38.619 21.156 9.446 6.092 MuHd_100 : 36.849 16.602 9.050 5.268 MuHd_105 : 30.286 10.276 7.832 3.803 Hmax_075 : -2.100 2.800 -1.909 0.980 Hmax_095 : 12.512 8.225 0.972 2.599 Hmax_100 : 13.700 8.400 1.230 3.150 Hmax_105 : 9.683 3.000 0.296 1.770 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8067 0.1933 DFMC : 0.8779 0.1221
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 545 LdBPK_352460.1 MTTVAEKKSTESVDSFSDKGLFSSRALRLEPQAPSMQLSGSAEVTKASSSSTPIRSSASTTVKTVSALSIARLHAAPIPL 80 RNFGATCYLNSVVQCLLCTPGLLRTLNIERQRIVREWEGRRRFEEKRKPDDAQRRSCAEHKAPATSSLIDLGTARPAHHI 160 AVQQLLLSLKAACAECNNEFSSNGQKDAHEFLITLLGVIDKEVCRSKPGNQETFKDFEDEKKSDVYARWVSWMQQENDST 240 VYDFFGGITGCTVKCSSCELTSYRFEVLLHISLPISYRSRSQGGGTDIRLPDGELDGKAKPKGVAAVDELLREMFFSERG 320 ESLNGPMQVTCDRCKQLRDKRIWYSMEYWPPILVLHLKRFNNAGVKNETAVVFPYTFHPHRYVKYQLYGVCCHRGTCSSG 400 HYTAYTYVQEDDKKAVVRKKAPTVAAFSDFYNPSLKGTQSDRIFSPQTLPRRGGVGIFGWFDGVSIGNGDNNARASSEAL 480 SHKGNGRADGKDRARSAGRTAKAGKWYLCNDKNITEVSAPDVLSMTKEAYILFYRRVDDGDVMVI 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................. 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_352460.1 7 MTTVAEK|KS 0.061 . LdBPK_352460.1 8 TTVAEKK|ST 0.177 . LdBPK_352460.1 19 VDSFSDK|GL 0.087 . LdBPK_352460.1 25 KGLFSSR|AL 0.084 . LdBPK_352460.1 28 FSSRALR|LE 0.238 . LdBPK_352460.1 46 GSAEVTK|AS 0.079 . LdBPK_352460.1 55 SSSTPIR|SS 0.161 . LdBPK_352460.1 63 SASTTVK|TV 0.091 . LdBPK_352460.1 72 SALSIAR|LH 0.071 . LdBPK_352460.1 81 AAPIPLR|NF 0.077 . LdBPK_352460.1 104 CTPGLLR|TL 0.069 . LdBPK_352460.1 110 RTLNIER|QR 0.072 . LdBPK_352460.1 112 LNIERQR|IV 0.130 . LdBPK_352460.1 115 ERQRIVR|EW 0.341 . LdBPK_352460.1 120 VREWEGR|RR 0.084 . LdBPK_352460.1 121 REWEGRR|RF 0.102 . LdBPK_352460.1 122 EWEGRRR|FE 0.135 . LdBPK_352460.1 126 RRRFEEK|RK 0.066 . LdBPK_352460.1 127 RRFEEKR|KP 0.240 . LdBPK_352460.1 128 RFEEKRK|PD 0.106 . LdBPK_352460.1 134 KPDDAQR|RS 0.084 . LdBPK_352460.1 135 PDDAQRR|SC 0.180 . LdBPK_352460.1 141 RSCAEHK|AP 0.063 . LdBPK_352460.1 155 IDLGTAR|PA 0.121 . LdBPK_352460.1 170 QLLLSLK|AA 0.068 . LdBPK_352460.1 186 FSSNGQK|DA 0.099 . LdBPK_352460.1 201 LLGVIDK|EV 0.081 . LdBPK_352460.1 205 IDKEVCR|SK 0.137 . LdBPK_352460.1 207 KEVCRSK|PG 0.062 . LdBPK_352460.1 215 GNQETFK|DF 0.094 . LdBPK_352460.1 221 KDFEDEK|KS 0.062 . LdBPK_352460.1 222 DFEDEKK|SD 0.106 . LdBPK_352460.1 228 KSDVYAR|WV 0.248 . LdBPK_352460.1 254 ITGCTVK|CS 0.068 . LdBPK_352460.1 264 CELTSYR|FE 0.069 . LdBPK_352460.1 278 SLPISYR|SR 0.219 . LdBPK_352460.1 280 PISYRSR|SQ 0.217 . LdBPK_352460.1 289 GGGTDIR|LP 0.090 . LdBPK_352460.1 298 DGELDGK|AK 0.059 . LdBPK_352460.1 300 ELDGKAK|PK 0.077 . LdBPK_352460.1 302 DGKAKPK|GV 0.105 . LdBPK_352460.1 312 AVDELLR|EM 0.076 . LdBPK_352460.1 319 EMFFSER|GE 0.093 . LdBPK_352460.1 333 MQVTCDR|CK 0.069 . LdBPK_352460.1 335 VTCDRCK|QL 0.070 . LdBPK_352460.1 338 DRCKQLR|DK 0.132 . LdBPK_352460.1 340 CKQLRDK|RI 0.066 . LdBPK_352460.1 341 KQLRDKR|IW 0.482 . LdBPK_352460.1 358 ILVLHLK|RF 0.062 . LdBPK_352460.1 359 LVLHLKR|FN 0.220 . LdBPK_352460.1 366 FNNAGVK|NE 0.060 . LdBPK_352460.1 381 YTFHPHR|YV 0.153 . LdBPK_352460.1 384 HPHRYVK|YQ 0.170 . LdBPK_352460.1 394 YGVCCHR|GT 0.101 . LdBPK_352460.1 413 YVQEDDK|KA 0.057 . LdBPK_352460.1 414 VQEDDKK|AV 0.101 . LdBPK_352460.1 418 DKKAVVR|KK 0.099 . LdBPK_352460.1 419 KKAVVRK|KA 0.145 . LdBPK_352460.1 420 KAVVRKK|AP 0.108 . LdBPK_352460.1 436 FYNPSLK|GT 0.064 . LdBPK_352460.1 442 KGTQSDR|IF 0.091 . LdBPK_352460.1 451 SPQTLPR|RG 0.132 . LdBPK_352460.1 452 PQTLPRR|GG 0.116 . LdBPK_352460.1 474 NGDNNAR|AS 0.114 . LdBPK_352460.1 483 SEALSHK|GN 0.082 . LdBPK_352460.1 487 SHKGNGR|AD 0.114 . LdBPK_352460.1 491 NGRADGK|DR 0.064 . LdBPK_352460.1 493 RADGKDR|AR 0.135 . LdBPK_352460.1 495 DGKDRAR|SA 0.203 . LdBPK_352460.1 499 RARSAGR|TA 0.121 . LdBPK_352460.1 502 SAGRTAK|AG 0.157 . LdBPK_352460.1 505 RTAKAGK|WY 0.064 . LdBPK_352460.1 512 WYLCNDK|NI 0.056 . LdBPK_352460.1 527 DVLSMTK|EA 0.058 . LdBPK_352460.1 535 AYILFYR|RV 0.132 . LdBPK_352460.1 536 YILFYRR|VD 0.098 . ____________________________^_________________

  • Fasta :-

    >LdBPK_352460.1 ATGACGACTGTGGCCGAGAAGAAAAGCACGGAAAGCGTCGACTCTTTTTCCGACAAAGGA TTGTTTTCCTCTCGCGCACTGCGCCTCGAGCCTCAGGCTCCGTCGATGCAGCTTTCAGGA TCTGCAGAGGTGACCAAGGCGTCATCGTCGTCGACGCCAATCCGTAGCAGTGCATCTACC ACTGTGAAGACGGTGTCGGCGCTCTCCATCGCTCGACTGCACGCAGCGCCGATTCCGCTG CGCAATTTCGGTGCGACGTGCTATCTGAACTCGGTAGTGCAGTGCCTGCTATGCACACCT GGCCTGCTCCGCACGTTGAACATTGAACGTCAACGCATCGTGCGCGAATGGGAGGGGAGG CGCCGCTTCGAGGAGAAGCGAAAGCCGGACGATGCCCAACGGCGCAGCTGCGCTGAGCAC AAGGCCCCGGCGACGTCTTCGCTGATTGATTTGGGCACCGCGCGCCCCGCGCACCACATC GCGGTTCAGCAGCTTCTTCTCAGTCTCAAGGCGGCTTGTGCGGAGTGTAACAATGAGTTT TCGTCTAATGGACAGAAAGACGCGCATGAGTTTCTCATCACGCTGCTGGGGGTGATCGAC AAGGAGGTTTGCCGCAGCAAGCCAGGCAACCAGGAAACCTTCAAAGACTTTGAAGATGAG AAAAAGAGTGATGTGTACGCGCGATGGGTGAGCTGGATGCAGCAGGAGAACGACTCGACC GTGTACGACTTTTTCGGCGGAATCACCGGCTGCACCGTCAAGTGTTCTAGCTGCGAACTG ACTTCCTACCGCTTTGAAGTGCTGCTGCACATCTCCTTGCCCATATCTTACCGTTCCCGC TCACAGGGCGGTGGAACCGACATCCGGTTGCCCGATGGGGAGCTCGACGGCAAGGCGAAG CCTAAAGGGGTCGCTGCCGTTGACGAGTTGTTGCGCGAGATGTTCTTTAGCGAGCGTGGG GAGTCCTTGAATGGTCCGATGCAGGTGACGTGCGACCGCTGCAAGCAGCTGCGAGACAAA CGCATATGGTATTCAATGGAGTATTGGCCGCCGATTCTGGTGCTTCATCTGAAGCGCTTC AACAATGCTGGAGTCAAGAATGAGACGGCGGTGGTGTTTCCGTACACGTTTCACCCGCAC CGGTACGTCAAGTATCAGCTGTACGGTGTCTGCTGCCACCGCGGCACTTGCTCCTCCGGG CACTACACGGCGTACACGTACGTGCAGGAGGATGACAAGAAAGCAGTAGTGCGGAAAAAA GCCCCCACTGTTGCGGCGTTCTCCGATTTCTACAACCCCTCACTGAAAGGCACGCAAAGC GATCGCATCTTCAGCCCCCAGACGCTCCCGCGCAGGGGTGGCGTCGGTATCTTCGGCTGG TTTGACGGCGTCAGCATAGGAAATGGCGACAATAATGCGCGGGCTAGTAGTGAGGCATTG AGCCACAAAGGAAACGGAAGGGCTGATGGAAAAGATCGGGCTCGTTCGGCAGGGAGGACG GCGAAGGCTGGCAAGTGGTATCTCTGCAACGACAAAAATATCACCGAGGTGTCGGCGCCG GACGTGCTGTCGATGACGAAGGAGGCATACATCCTTTTCTACCGGCGCGTTGATGATGGA GATGTGATGGTCATCTGA
  • Download Fasta

  • Fasta :-

    MTTVAEKKSTESVDSFSDKGLFSSRALRLEPQAPSMQLSGSAEVTKASSSSTPIRSSAST TVKTVSALSIARLHAAPIPLRNFGATCYLNSVVQCLLCTPGLLRTLNIERQRIVREWEGR RRFEEKRKPDDAQRRSCAEHKAPATSSLIDLGTARPAHHIAVQQLLLSLKAACAECNNEF SSNGQKDAHEFLITLLGVIDKEVCRSKPGNQETFKDFEDEKKSDVYARWVSWMQQENDST VYDFFGGITGCTVKCSSCELTSYRFEVLLHISLPISYRSRSQGGGTDIRLPDGELDGKAK PKGVAAVDELLREMFFSERGESLNGPMQVTCDRCKQLRDKRIWYSMEYWPPILVLHLKRF NNAGVKNETAVVFPYTFHPHRYVKYQLYGVCCHRGTCSSGHYTAYTYVQEDDKKAVVRKK APTVAAFSDFYNPSLKGTQSDRIFSPQTLPRRGGVGIFGWFDGVSIGNGDNNARASSEAL SHKGNGRADGKDRARSAGRTAKAGKWYLCNDKNITEVSAPDVLSMTKEAYILFYRRVDDG DVMVI

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_352460.157 SPIRSSASTT0.991unspLdBPK_352460.157 SPIRSSASTT0.991unspLdBPK_352460.157 SPIRSSASTT0.991unspLdBPK_352460.1136 SAQRRSCAEH0.992unspLdBPK_352460.1281 SYRSRSQGGG0.995unspLdBPK_352460.1476 SNARASSEAL0.991unspLdBPK_352460.1481 SSEALSHKGN0.995unspLdBPK_352460.1496 SDRARSAGRT0.997unspLdBPK_352460.115 SESVDSFSDK0.996unspLdBPK_352460.117 SVDSFSDKGL0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India