LdBPK_352850.1 | Alpha/beta hydrolase family, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_352850.1OTHER0.9169340.0740480.009018
No Results

  • Fasta :-

    >LdBPK_352850.1 MIFGSALVLVVAALNSSANRYLPAKLKLLAPSVGWFIMNLFIARGPLVWYVCSLAIQGLF ATLLFMTIGFKSDLVSRVVILPFLSTAMAAWMKEVLPSVGVWTTVAVTFMQLWSILGGII ILACYPANILQVLEQQDARNRRVRAVARTLVRKKDKSVDVCMVPSLDGKTELQTLAVKQA YETSRWIVYCGGNAEFLENSLNDIHVISDALKAHAILYNPRGIGFSTGYLSQLGELVEDV AAVARAYIEKERIDENNLLFFGHSIGGGTAAQVVAECYPHASLVLDRTFSSMSDAAVAFS YLTPKVTRKVFPWFVGDLHTLAGWDNIRHNRKLVLYSKQDEVIKFDISSIARLPQFQKDG ADADKAVELFGAPPSYHNSLLSAFDNYEEVCVRMSKMFTV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_352850.1.fa Sequence name : LdBPK_352850 Sequence length : 400 VALUES OF COMPUTED PARAMETERS Coef20 : 4.825 CoefTot : 0.411 ChDiff : 3 ZoneTo : 133 KR : 7 DE : 2 CleavSite : 30 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.082 1.988 0.379 0.774 MesoH : 1.181 1.417 0.075 0.549 MuHd_075 : 31.443 25.818 9.813 8.713 MuHd_095 : 25.524 23.796 7.881 6.463 MuHd_100 : 24.269 23.608 7.292 6.275 MuHd_105 : 21.325 18.671 5.794 5.786 Hmax_075 : 12.600 22.500 5.495 6.820 Hmax_095 : 19.950 25.025 4.415 6.904 Hmax_100 : 19.400 24.700 4.255 7.620 Hmax_105 : 17.400 23.000 4.708 7.053 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2410 0.7590 DFMC : 0.0342 0.9658 This protein is probably imported in mitochondria. f(Ser) = 0.0752 f(Arg) = 0.0226 CMi = 0.74019 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 400 LdBPK_352850.1 MIFGSALVLVVAALNSSANRYLPAKLKLLAPSVGWFIMNLFIARGPLVWYVCSLAIQGLFATLLFMTIGFKSDLVSRVVI 80 LPFLSTAMAAWMKEVLPSVGVWTTVAVTFMQLWSILGGIIILACYPANILQVLEQQDARNRRVRAVARTLVRKKDKSVDV 160 CMVPSLDGKTELQTLAVKQAYETSRWIVYCGGNAEFLENSLNDIHVISDALKAHAILYNPRGIGFSTGYLSQLGELVEDV 240 AAVARAYIEKERIDENNLLFFGHSIGGGTAAQVVAECYPHASLVLDRTFSSMSDAAVAFSYLTPKVTRKVFPWFVGDLHT 320 LAGWDNIRHNRKLVLYSKQDEVIKFDISSIARLPQFQKDGADADKAVELFGAPPSYHNSLLSAFDNYEEVCVRMSKMFTV 400 ................................................................................ 80 ...............................................................P................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_352850.1 20 LNSSANR|YL 0.132 . LdBPK_352850.1 25 NRYLPAK|LK 0.062 . LdBPK_352850.1 27 YLPAKLK|LL 0.068 . LdBPK_352850.1 44 MNLFIAR|GP 0.076 . LdBPK_352850.1 71 FMTIGFK|SD 0.062 . LdBPK_352850.1 77 KSDLVSR|VV 0.089 . LdBPK_352850.1 93 AMAAWMK|EV 0.078 . LdBPK_352850.1 139 LEQQDAR|NR 0.072 . LdBPK_352850.1 141 QQDARNR|RV 0.113 . LdBPK_352850.1 142 QDARNRR|VR 0.365 . LdBPK_352850.1 144 ARNRRVR|AV 0.556 *ProP* LdBPK_352850.1 148 RVRAVAR|TL 0.096 . LdBPK_352850.1 152 VARTLVR|KK 0.090 . LdBPK_352850.1 153 ARTLVRK|KD 0.080 . LdBPK_352850.1 154 RTLVRKK|DK 0.132 . LdBPK_352850.1 156 LVRKKDK|SV 0.147 . LdBPK_352850.1 169 VPSLDGK|TE 0.063 . LdBPK_352850.1 178 LQTLAVK|QA 0.061 . LdBPK_352850.1 185 QAYETSR|WI 0.103 . LdBPK_352850.1 212 VISDALK|AH 0.059 . LdBPK_352850.1 221 AILYNPR|GI 0.111 . LdBPK_352850.1 245 DVAAVAR|AY 0.117 . LdBPK_352850.1 250 ARAYIEK|ER 0.070 . LdBPK_352850.1 252 AYIEKER|ID 0.088 . LdBPK_352850.1 287 ASLVLDR|TF 0.088 . LdBPK_352850.1 305 FSYLTPK|VT 0.075 . LdBPK_352850.1 308 LTPKVTR|KV 0.127 . LdBPK_352850.1 309 TPKVTRK|VF 0.088 . LdBPK_352850.1 328 AGWDNIR|HN 0.082 . LdBPK_352850.1 331 DNIRHNR|KL 0.175 . LdBPK_352850.1 332 NIRHNRK|LV 0.099 . LdBPK_352850.1 338 KLVLYSK|QD 0.064 . LdBPK_352850.1 344 KQDEVIK|FD 0.065 . LdBPK_352850.1 352 DISSIAR|LP 0.083 . LdBPK_352850.1 358 RLPQFQK|DG 0.073 . LdBPK_352850.1 365 DGADADK|AV 0.076 . LdBPK_352850.1 393 YEEVCVR|MS 0.073 . LdBPK_352850.1 396 VCVRMSK|MF 0.116 . ____________________________^_________________

  • Fasta :-

    >LdBPK_352850.1 ATGATCTTCGGTTCAGCGCTGGTGCTCGTGGTGGCGGCCCTCAACAGCTCCGCCAACCGC TATCTTCCTGCCAAGTTGAAGTTGCTTGCGCCCTCAGTAGGGTGGTTCATCATGAATCTG TTCATTGCCCGGGGCCCTCTCGTGTGGTATGTGTGCTCGTTGGCGATTCAAGGACTGTTT GCCACGCTGCTCTTCATGACTATCGGTTTCAAGAGCGACCTTGTCTCGCGCGTCGTCATC CTTCCGTTTCTGTCCACCGCGATGGCGGCCTGGATGAAGGAGGTTCTGCCCTCGGTTGGG GTGTGGACTACTGTCGCGGTCACCTTCATGCAGCTCTGGAGCATCCTCGGGGGCATCATA ATCCTCGCCTGCTATCCGGCCAACATTCTACAGGTCCTTGAGCAGCAGGATGCGCGCAAC CGCCGCGTCCGTGCGGTTGCTCGCACGCTGGTTCGAAAGAAAGACAAGTCTGTCGATGTG TGCATGGTGCCATCGCTGGATGGAAAGACCGAGCTGCAGACGCTTGCGGTAAAGCAGGCG TATGAGACGTCGCGCTGGATCGTGTACTGCGGCGGCAACGCGGAGTTCCTGGAGAACAGC CTCAACGACATCCACGTCATCAGCGACGCTCTCAAGGCACACGCCATCCTGTATAACCCA CGCGGCATCGGCTTCAGCACCGGTTATCTCTCGCAGCTCGGCGAATTGGTCGAGGACGTT GCCGCAGTGGCGCGAGCGTACATTGAGAAGGAGAGGATCGACGAGAACAACTTGCTTTTC TTTGGCCACAGCATCGGCGGCGGTACTGCGGCGCAGGTGGTGGCGGAATGCTACCCGCAT GCGTCCCTCGTGCTGGATCGTACCTTCTCGTCCATGTCGGACGCAGCTGTAGCCTTTTCC TATCTCACCCCCAAGGTCACACGCAAGGTCTTTCCCTGGTTTGTCGGCGACCTTCACACT CTGGCCGGCTGGGACAATATCAGGCACAACCGTAAGCTCGTCCTCTACTCGAAGCAGGAT GAGGTGATCAAGTTCGACATCTCCTCCATTGCTCGCCTCCCGCAGTTTCAGAAGGATGGC GCGGACGCCGACAAGGCTGTTGAGCTTTTTGGCGCCCCGCCGTCCTACCACAACAGCCTC TTGAGCGCCTTTGACAACTACGAGGAGGTATGCGTCCGCATGAGTAAGATGTTCACCGTG TAA
  • Download Fasta

  • Fasta :-

    MIFGSALVLVVAALNSSANRYLPAKLKLLAPSVGWFIMNLFIARGPLVWYVCSLAIQGLF ATLLFMTIGFKSDLVSRVVILPFLSTAMAAWMKEVLPSVGVWTTVAVTFMQLWSILGGII ILACYPANILQVLEQQDARNRRVRAVARTLVRKKDKSVDVCMVPSLDGKTELQTLAVKQA YETSRWIVYCGGNAEFLENSLNDIHVISDALKAHAILYNPRGIGFSTGYLSQLGELVEDV AAVARAYIEKERIDENNLLFFGHSIGGGTAAQVVAECYPHASLVLDRTFSSMSDAAVAFS YLTPKVTRKVFPWFVGDLHTLAGWDNIRHNRKLVLYSKQDEVIKFDISSIARLPQFQKDG ADADKAVELFGAPPSYHNSLLSAFDNYEEVCVRMSKMFTV

    No Results
No Results
No Results
No Results

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India