LdBPK_353500.1 | DNA-repair protein, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003677      

  • Computed_GO_Functions:  DNA binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      GO:0031981      GO:0005634      

  • Curated_GO_Components:  cytoplasm      nuclear lumen      nucleus      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_353500.1OTHER0.9999820.0000170.000001
No Results

  • Fasta :-

    >LdBPK_353500.1 MAMVTSASVPADPAETCNVTEEDRSDLAADVDEWDEVELPVAFSPAKKQEESESDSLAKK GLTDDGESEAVKHETAYAVSTLKTEVTTTTRGEADTVTSSSVKEELVNVDEEAAASDRPL MEWAQLPLVGRSRASDTWRQRDPAYEAMIEQRDLLAAKRRSERIQRVCESLFALLAVFIR ARLLWRESCHPRFVKQLLRLHVSRGKSPKRSRCEDPSRKVTSAYVFLKAVATAKVLVAES TKSSHRKLSLAPAWVTCAKDAVQNKTSAAVNVLIKIINDHFKLVAPAAPASSSGRETPVS AAAYTVAPPSAEQDFSDWSVPVKLGFLFTKIAECDCRVSADAPLELPHPLYFSLVFLALA RVAGLSCRLVVAKLAKTQLEKARAAGPAGGAANGYNDTSEGKDSTADGDIEDSTRRPLRI LSIFEGREKRKASDRTNASGAARAGKGSKRQRPSAGSAEDTKDSEELKSKKLPTSCYWVE VWSAERESFLSVNPCQSCATLWGASYTLSVSGHVAVDATPRYISKYSTAYAYGRRLGTCR QHRFLWRNELAWDDTRELSEVLRATFNVAAPHTSSLAQRQQQRESRQLHSLMYSEAVPTT LSALHRHPLYVIDSDLARHEGVYPKDACTTVGSVKGRLVYKRSAIVSLRSRDGWLREGRS LLTEDQPAYKVVAPPASRPFAAPSTLYGRWQTQPFEPLPLTAGDPPSIPHHGRTSWYILL DKAPPQGIVHLTQPQISRVARRMKLDFRLAVVGFERRRTDEHRRGHWETVINGIVVKETD SVALLRAYEEWVQLVQEQEATKRRQRAFHWWLLLAQRLLALKRLQDQYAKGLGAGAMPMQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_353500.1.fa Sequence name : LdBPK_353500 Sequence length : 840 VALUES OF COMPUTED PARAMETERS Coef20 : 4.116 CoefTot : 0.394 ChDiff : 17 ZoneTo : 11 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.235 1.912 0.246 0.619 MesoH : -0.234 0.681 -0.226 0.279 MuHd_075 : 1.772 3.692 1.285 0.920 MuHd_095 : 13.273 3.528 4.453 1.246 MuHd_100 : 15.374 5.675 5.279 1.830 MuHd_105 : 19.485 10.210 6.419 2.848 Hmax_075 : 6.200 6.900 0.826 2.620 Hmax_095 : 10.850 5.775 1.920 2.328 Hmax_100 : 9.800 6.400 2.058 2.940 Hmax_105 : 12.833 12.400 3.204 4.010 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9868 0.0132 DFMC : 0.9764 0.0236
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 840 LdBPK_353500.1 MAMVTSASVPADPAETCNVTEEDRSDLAADVDEWDEVELPVAFSPAKKQEESESDSLAKKGLTDDGESEAVKHETAYAVS 80 TLKTEVTTTTRGEADTVTSSSVKEELVNVDEEAAASDRPLMEWAQLPLVGRSRASDTWRQRDPAYEAMIEQRDLLAAKRR 160 SERIQRVCESLFALLAVFIRARLLWRESCHPRFVKQLLRLHVSRGKSPKRSRCEDPSRKVTSAYVFLKAVATAKVLVAES 240 TKSSHRKLSLAPAWVTCAKDAVQNKTSAAVNVLIKIINDHFKLVAPAAPASSSGRETPVSAAAYTVAPPSAEQDFSDWSV 320 PVKLGFLFTKIAECDCRVSADAPLELPHPLYFSLVFLALARVAGLSCRLVVAKLAKTQLEKARAAGPAGGAANGYNDTSE 400 GKDSTADGDIEDSTRRPLRILSIFEGREKRKASDRTNASGAARAGKGSKRQRPSAGSAEDTKDSEELKSKKLPTSCYWVE 480 VWSAERESFLSVNPCQSCATLWGASYTLSVSGHVAVDATPRYISKYSTAYAYGRRLGTCRQHRFLWRNELAWDDTRELSE 560 VLRATFNVAAPHTSSLAQRQQQRESRQLHSLMYSEAVPTTLSALHRHPLYVIDSDLARHEGVYPKDACTTVGSVKGRLVY 640 KRSAIVSLRSRDGWLREGRSLLTEDQPAYKVVAPPASRPFAAPSTLYGRWQTQPFEPLPLTAGDPPSIPHHGRTSWYILL 720 DKAPPQGIVHLTQPQISRVARRMKLDFRLAVVGFERRRTDEHRRGHWETVINGIVVKETDSVALLRAYEEWVQLVQEQEA 800 TKRRQRAFHWWLLLAQRLLALKRLQDQYAKGLGAGAMPMQ 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .............................P.................................................. 480 ................................................................................ 560 ................................................................................ 640 .P.............................................................................. 720 ................................................................................ 800 ........................................ 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LdBPK_353500.1 24 NVTEEDR|SD 0.089 . LdBPK_353500.1 47 VAFSPAK|KQ 0.071 . LdBPK_353500.1 48 AFSPAKK|QE 0.113 . LdBPK_353500.1 59 ESDSLAK|KG 0.058 . LdBPK_353500.1 60 SDSLAKK|GL 0.158 . LdBPK_353500.1 72 GESEAVK|HE 0.068 . LdBPK_353500.1 83 YAVSTLK|TE 0.052 . LdBPK_353500.1 91 EVTTTTR|GE 0.073 . LdBPK_353500.1 103 VTSSSVK|EE 0.060 . LdBPK_353500.1 118 EAAASDR|PL 0.084 . LdBPK_353500.1 131 QLPLVGR|SR 0.087 . LdBPK_353500.1 133 PLVGRSR|AS 0.089 . LdBPK_353500.1 139 RASDTWR|QR 0.150 . LdBPK_353500.1 141 SDTWRQR|DP 0.089 . LdBPK_353500.1 152 EAMIEQR|DL 0.119 . LdBPK_353500.1 158 RDLLAAK|RR 0.060 . LdBPK_353500.1 159 DLLAAKR|RS 0.141 . LdBPK_353500.1 160 LLAAKRR|SE 0.351 . LdBPK_353500.1 163 AKRRSER|IQ 0.255 . LdBPK_353500.1 166 RSERIQR|VC 0.202 . LdBPK_353500.1 180 LLAVFIR|AR 0.078 . LdBPK_353500.1 182 AVFIRAR|LL 0.081 . LdBPK_353500.1 186 RARLLWR|ES 0.089 . LdBPK_353500.1 192 RESCHPR|FV 0.272 . LdBPK_353500.1 195 CHPRFVK|QL 0.108 . LdBPK_353500.1 199 FVKQLLR|LH 0.064 . LdBPK_353500.1 204 LRLHVSR|GK 0.135 . LdBPK_353500.1 206 LHVSRGK|SP 0.070 . LdBPK_353500.1 209 SRGKSPK|RS 0.083 . LdBPK_353500.1 210 RGKSPKR|SR 0.211 . LdBPK_353500.1 212 KSPKRSR|CE 0.111 . LdBPK_353500.1 218 RCEDPSR|KV 0.104 . LdBPK_353500.1 219 CEDPSRK|VT 0.083 . LdBPK_353500.1 228 SAYVFLK|AV 0.089 . LdBPK_353500.1 234 KAVATAK|VL 0.065 . LdBPK_353500.1 242 LVAESTK|SS 0.089 . LdBPK_353500.1 246 STKSSHR|KL 0.098 . LdBPK_353500.1 247 TKSSHRK|LS 0.107 . LdBPK_353500.1 259 AWVTCAK|DA 0.087 . LdBPK_353500.1 265 KDAVQNK|TS 0.071 . LdBPK_353500.1 275 AVNVLIK|II 0.073 . LdBPK_353500.1 282 IINDHFK|LV 0.099 . LdBPK_353500.1 295 PASSSGR|ET 0.105 . LdBPK_353500.1 323 DWSVPVK|LG 0.063 . LdBPK_353500.1 330 LGFLFTK|IA 0.069 . LdBPK_353500.1 337 IAECDCR|VS 0.083 . LdBPK_353500.1 361 VFLALAR|VA 0.083 . LdBPK_353500.1 368 VAGLSCR|LV 0.114 . LdBPK_353500.1 373 CRLVVAK|LA 0.090 . LdBPK_353500.1 376 VVAKLAK|TQ 0.060 . LdBPK_353500.1 381 AKTQLEK|AR 0.062 . LdBPK_353500.1 383 TQLEKAR|AA 0.222 . LdBPK_353500.1 402 NDTSEGK|DS 0.070 . LdBPK_353500.1 415 DIEDSTR|RP 0.074 . LdBPK_353500.1 416 IEDSTRR|PL 0.096 . LdBPK_353500.1 419 STRRPLR|IL 0.385 . LdBPK_353500.1 427 LSIFEGR|EK 0.087 . LdBPK_353500.1 429 IFEGREK|RK 0.054 . LdBPK_353500.1 430 FEGREKR|KA 0.640 *ProP* LdBPK_353500.1 431 EGREKRK|AS 0.099 . LdBPK_353500.1 435 KRKASDR|TN 0.099 . LdBPK_353500.1 443 NASGAAR|AG 0.114 . LdBPK_353500.1 446 GAARAGK|GS 0.227 . LdBPK_353500.1 449 RAGKGSK|RQ 0.060 . LdBPK_353500.1 450 AGKGSKR|QR 0.151 . LdBPK_353500.1 452 KGSKRQR|PS 0.118 . LdBPK_353500.1 462 GSAEDTK|DS 0.072 . LdBPK_353500.1 468 KDSEELK|SK 0.070 . LdBPK_353500.1 470 SEELKSK|KL 0.063 . LdBPK_353500.1 471 EELKSKK|LP 0.076 . LdBPK_353500.1 486 EVWSAER|ES 0.064 . LdBPK_353500.1 521 AVDATPR|YI 0.112 . LdBPK_353500.1 525 TPRYISK|YS 0.076 . LdBPK_353500.1 534 TAYAYGR|RL 0.118 . LdBPK_353500.1 535 AYAYGRR|LG 0.093 . LdBPK_353500.1 540 RRLGTCR|QH 0.081 . LdBPK_353500.1 543 GTCRQHR|FL 0.365 . LdBPK_353500.1 547 QHRFLWR|NE 0.087 . LdBPK_353500.1 556 LAWDDTR|EL 0.101 . LdBPK_353500.1 563 ELSEVLR|AT 0.104 . LdBPK_353500.1 579 TSSLAQR|QQ 0.124 . LdBPK_353500.1 583 AQRQQQR|ES 0.097 . LdBPK_353500.1 586 QQQRESR|QL 0.267 . LdBPK_353500.1 606 TLSALHR|HP 0.121 . LdBPK_353500.1 618 IDSDLAR|HE 0.123 . LdBPK_353500.1 625 HEGVYPK|DA 0.101 . LdBPK_353500.1 635 TTVGSVK|GR 0.061 . LdBPK_353500.1 637 VGSVKGR|LV 0.150 . LdBPK_353500.1 641 KGRLVYK|RS 0.062 . LdBPK_353500.1 642 GRLVYKR|SA 0.528 *ProP* LdBPK_353500.1 649 SAIVSLR|SR 0.150 . LdBPK_353500.1 651 IVSLRSR|DG 0.093 . LdBPK_353500.1 656 SRDGWLR|EG 0.081 . LdBPK_353500.1 659 GWLREGR|SL 0.341 . LdBPK_353500.1 670 EDQPAYK|VV 0.062 . LdBPK_353500.1 678 VAPPASR|PF 0.062 . LdBPK_353500.1 689 PSTLYGR|WQ 0.074 . LdBPK_353500.1 713 SIPHHGR|TS 0.118 . LdBPK_353500.1 722 WYILLDK|AP 0.062 . LdBPK_353500.1 738 TQPQISR|VA 0.088 . LdBPK_353500.1 741 QISRVAR|RM 0.266 . LdBPK_353500.1 742 ISRVARR|MK 0.193 . LdBPK_353500.1 744 RVARRMK|LD 0.111 . LdBPK_353500.1 748 RMKLDFR|LA 0.087 . LdBPK_353500.1 756 AVVGFER|RR 0.072 . LdBPK_353500.1 757 VVGFERR|RT 0.136 . LdBPK_353500.1 758 VGFERRR|TD 0.111 . LdBPK_353500.1 763 RRTDEHR|RG 0.091 . LdBPK_353500.1 764 RTDEHRR|GH 0.120 . LdBPK_353500.1 777 INGIVVK|ET 0.070 . LdBPK_353500.1 786 DSVALLR|AY 0.096 . LdBPK_353500.1 802 QEQEATK|RR 0.062 . LdBPK_353500.1 803 EQEATKR|RQ 0.127 . LdBPK_353500.1 804 QEATKRR|QR 0.116 . LdBPK_353500.1 806 ATKRRQR|AF 0.271 . LdBPK_353500.1 817 WLLLAQR|LL 0.070 . LdBPK_353500.1 822 QRLLALK|RL 0.058 . LdBPK_353500.1 823 RLLALKR|LQ 0.170 . LdBPK_353500.1 830 LQDQYAK|GL 0.083 . ____________________________^_________________

  • Fasta :-

    >LdBPK_353500.1 ATGGCCATGGTGACATCCGCCAGCGTACCCGCTGACCCAGCCGAAACGTGTAACGTCACG GAGGAGGACCGGAGCGACTTGGCCGCCGACGTGGACGAGTGGGATGAAGTGGAGCTTCCA GTCGCCTTTTCTCCTGCCAAGAAGCAGGAGGAAAGTGAAAGCGACAGCTTAGCCAAGAAG GGTCTGACTGATGACGGCGAAAGTGAGGCCGTGAAGCATGAGACCGCTTACGCGGTTTCA ACTCTCAAGACAGAAGTAACGACTACGACAAGGGGTGAGGCAGATACTGTAACATCGAGT AGCGTAAAGGAGGAACTTGTGAACGTGGACGAGGAGGCGGCTGCGAGCGATCGACCCCTG ATGGAATGGGCGCAACTGCCGCTTGTGGGACGGTCGCGCGCTTCAGATACATGGCGGCAG CGTGACCCAGCTTATGAGGCCATGATAGAGCAGAGGGATTTGCTAGCCGCAAAGCGTCGC TCAGAGCGCATTCAGCGCGTCTGCGAGTCGCTCTTCGCACTCCTGGCTGTGTTCATTCGA GCCCGTCTGCTCTGGCGCGAGTCGTGCCATCCCAGGTTCGTTAAACAGCTTCTCCGGCTC CATGTGTCGCGCGGAAAGAGCCCGAAACGCTCACGCTGCGAAGATCCTTCCAGAAAGGTA ACAAGTGCTTACGTTTTTCTCAAAGCCGTAGCCACCGCAAAGGTGCTGGTGGCAGAGTCG ACAAAGTCGTCGCATCGCAAGCTCTCGCTTGCCCCAGCGTGGGTGACGTGCGCAAAAGAC GCGGTGCAGAATAAAACCTCGGCGGCCGTGAATGTACTCATTAAAATCATCAACGACCAC TTCAAGTTAGTGGCACCGGCAGCTCCAGCTTCGTCGAGTGGACGCGAGACACCTGTTAGT GCCGCGGCGTATACTGTTGCTCCGCCGTCTGCGGAGCAAGACTTTTCCGACTGGTCGGTG CCTGTCAAACTAGGGTTTCTCTTCACGAAGATAGCAGAGTGTGATTGCCGTGTCTCAGCG GATGCGCCACTCGAGTTGCCCCATCCCCTTTACTTCTCCCTTGTGTTTCTAGCATTGGCG CGCGTGGCGGGGCTGAGCTGCCGTCTTGTGGTGGCGAAGCTAGCCAAGACGCAGCTGGAG AAGGCCCGCGCAGCGGGGCCTGCCGGCGGCGCTGCCAATGGGTACAACGACACAAGTGAA GGCAAGGACAGCACCGCAGACGGTGACATCGAAGATAGCACTCGCCGGCCGCTGCGAATT CTTTCCATTTTTGAAGGCCGCGAGAAGCGCAAGGCATCGGATCGCACCAACGCTAGTGGG GCTGCTCGAGCGGGCAAGGGGTCGAAGCGGCAGCGACCCTCAGCAGGGTCGGCAGAAGAC ACCAAAGACAGTGAGGAGCTCAAGTCAAAAAAGCTGCCCACTTCATGCTACTGGGTGGAG GTGTGGTCCGCGGAGCGCGAGAGCTTCCTTTCTGTGAACCCGTGCCAAAGCTGCGCCACC CTTTGGGGTGCATCATACACGCTGTCAGTCTCTGGCCACGTGGCGGTGGACGCGACGCCG CGGTACATCTCCAAGTACAGCACCGCATACGCCTACGGTCGTCGCCTCGGCACCTGTCGG CAGCACCGATTCCTGTGGCGCAACGAACTCGCCTGGGATGATACCCGTGAGCTGTCTGAA GTGCTGCGTGCCACTTTCAACGTGGCTGCGCCACACACGAGCTCGCTGGCGCAGCGGCAG CAGCAGCGGGAGAGCCGGCAGCTACACTCCCTCATGTACTCAGAGGCCGTGCCCACAACG CTGAGTGCTCTTCACCGCCACCCACTCTATGTGATAGACTCCGACCTTGCGCGGCATGAG GGGGTATACCCAAAGGATGCATGCACGACCGTGGGAAGCGTGAAGGGTCGCCTGGTCTAC AAGCGTTCCGCCATCGTGAGTCTGCGGTCTCGTGACGGGTGGCTGCGCGAGGGGCGCAGC CTGCTCACGGAGGACCAGCCAGCGTACAAGGTTGTGGCACCACCCGCCTCTCGCCCGTTT GCGGCACCGTCAACACTCTACGGTCGTTGGCAAACACAGCCGTTCGAGCCACTGCCGCTC ACTGCAGGCGATCCTCCGAGCATTCCTCATCACGGGCGGACGTCGTGGTACATCTTACTC GACAAAGCCCCGCCACAGGGAATTGTGCACCTGACCCAGCCCCAGATATCTCGCGTGGCG CGCCGCATGAAGCTAGACTTCCGCTTGGCTGTGGTTGGCTTTGAGCGCCGCCGCACCGAC GAGCACCGCCGCGGGCACTGGGAGACCGTCATCAACGGCATTGTTGTCAAGGAAACAGAC AGCGTCGCACTCCTTCGCGCCTACGAGGAGTGGGTGCAGCTGGTGCAGGAGCAGGAAGCG ACGAAGCGAAGACAGCGTGCGTTTCACTGGTGGCTTTTGCTTGCGCAGCGTCTTCTGGCG TTAAAACGGCTGCAGGATCAGTACGCCAAGGGGCTCGGCGCCGGCGCGATGCCGATGCAG TGA
  • Download Fasta

  • Fasta :-

    MAMVTSASVPADPAETCNVTEEDRSDLAADVDEWDEVELPVAFSPAKKQEESESDSLAKK GLTDDGESEAVKHETAYAVSTLKTEVTTTTRGEADTVTSSSVKEELVNVDEEAAASDRPL MEWAQLPLVGRSRASDTWRQRDPAYEAMIEQRDLLAAKRRSERIQRVCESLFALLAVFIR ARLLWRESCHPRFVKQLLRLHVSRGKSPKRSRCEDPSRKVTSAYVFLKAVATAKVLVAES TKSSHRKLSLAPAWVTCAKDAVQNKTSAAVNVLIKIINDHFKLVAPAAPASSSGRETPVS AAAYTVAPPSAEQDFSDWSVPVKLGFLFTKIAECDCRVSADAPLELPHPLYFSLVFLALA RVAGLSCRLVVAKLAKTQLEKARAAGPAGGAANGYNDTSEGKDSTADGDIEDSTRRPLRI LSIFEGREKRKASDRTNASGAARAGKGSKRQRPSAGSAEDTKDSEELKSKKLPTSCYWVE VWSAERESFLSVNPCQSCATLWGASYTLSVSGHVAVDATPRYISKYSTAYAYGRRLGTCR QHRFLWRNELAWDDTRELSEVLRATFNVAAPHTSSLAQRQQQRESRQLHSLMYSEAVPTT LSALHRHPLYVIDSDLARHEGVYPKDACTTVGSVKGRLVYKRSAIVSLRSRDGWLREGRS LLTEDQPAYKVVAPPASRPFAAPSTLYGRWQTQPFEPLPLTAGDPPSIPHHGRTSWYILL DKAPPQGIVHLTQPQISRVARRMKLDFRLAVVGFERRRTDEHRRGHWETVINGIVVKETD SVALLRAYEEWVQLVQEQEATKRRQRAFHWWLLLAQRLLALKRLQDQYAKGLGAGAMPMQ

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_353500.1161 SAKRRSERIQ0.996unspLdBPK_353500.1161 SAKRRSERIQ0.996unspLdBPK_353500.1161 SAKRRSERIQ0.996unspLdBPK_353500.1207 SSRGKSPKRS0.998unspLdBPK_353500.1211 SSPKRSRCED0.996unspLdBPK_353500.1217 SCEDPSRKVT0.992unspLdBPK_353500.1293 SPASSSGRET0.996unspLdBPK_353500.1310 SVAPPSAEQD0.991unspLdBPK_353500.1404 SEGKDSTADG0.997unspLdBPK_353500.1433 SKRKASDRTN0.993unspLdBPK_353500.1454 SRQRPSAGSA0.994unspLdBPK_353500.1457 SPSAGSAEDT0.998unspLdBPK_353500.1524 SPRYISKYST0.994unspLdBPK_353500.152 SKQEESESDS0.996unspLdBPK_353500.1101 SVTSSSVKEE0.998unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India