LdBPK_360220.1 | mitochondrial inner membrane signal peptidase, putative

  • Computed_GO_Component_IDs:        

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  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

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  • Curated_GO_Component_IDs:  GO:0020023      GO:0005739      

  • Curated_GO_Components:  kinetoplast      mitochondrion      

  • Curated_GO_Function_IDs:        

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  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_360220.1SP0.4578090.5229740.019216CS pos: 35-36. VSC-AV. Pr: 0.5207
No Results

  • Fasta :-

    >LdBPK_360220.1 MRWRQWWSALRYSKYGDVPFVLLGVLIGWNCDVSCAVKGVSMVPTLNPGEYILFVPYTML QVRRWFNAPLVNLSDVVVVKVSDDLSVCKRVVKCTSSRAQAEEWGKEHYVEVMPAPYSPP VPQHMNGDDEDSTEVDSATNSERAYFDYVARNTVRSKDWDSCIDRIPNPSQWIWLEGDNK SESFDSRRCGPVPVECIRGLVLASIWPSPHALQRPPPPPRASQLH
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_360220.1.fa Sequence name : LdBPK_360220 Sequence length : 225 VALUES OF COMPUTED PARAMETERS Coef20 : 4.252 CoefTot : -2.168 ChDiff : -2 ZoneTo : 74 KR : 7 DE : 3 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.124 1.765 0.273 0.625 MesoH : -0.007 0.851 -0.176 0.342 MuHd_075 : 24.003 17.624 7.724 6.834 MuHd_095 : 26.206 18.989 6.371 5.838 MuHd_100 : 29.752 18.020 7.273 5.998 MuHd_105 : 36.054 22.089 9.094 7.814 Hmax_075 : 10.588 18.637 5.131 4.970 Hmax_095 : 14.787 14.600 2.094 5.758 Hmax_100 : 15.900 15.600 2.507 5.650 Hmax_105 : 13.500 19.483 2.946 4.840 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9182 0.0818 DFMC : 0.9173 0.0827
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 225 LdBPK_360220.1 MRWRQWWSALRYSKYGDVPFVLLGVLIGWNCDVSCAVKGVSMVPTLNPGEYILFVPYTMLQVRRWFNAPLVNLSDVVVVK 80 VSDDLSVCKRVVKCTSSRAQAEEWGKEHYVEVMPAPYSPPVPQHMNGDDEDSTEVDSATNSERAYFDYVARNTVRSKDWD 160 SCIDRIPNPSQWIWLEGDNKSESFDSRRCGPVPVECIRGLVLASIWPSPHALQRPPPPPRASQLH 240 ................................................................................ 80 ................................................................................ 160 ................................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_360220.1 2 -----MR|WR 0.074 . LdBPK_360220.1 4 ---MRWR|QW 0.112 . LdBPK_360220.1 11 QWWSALR|YS 0.080 . LdBPK_360220.1 14 SALRYSK|YG 0.115 . LdBPK_360220.1 38 DVSCAVK|GV 0.088 . LdBPK_360220.1 63 YTMLQVR|RW 0.082 . LdBPK_360220.1 64 TMLQVRR|WF 0.158 . LdBPK_360220.1 80 SDVVVVK|VS 0.065 . LdBPK_360220.1 89 DDLSVCK|RV 0.067 . LdBPK_360220.1 90 DLSVCKR|VV 0.212 . LdBPK_360220.1 93 VCKRVVK|CT 0.121 . LdBPK_360220.1 98 VKCTSSR|AQ 0.085 . LdBPK_360220.1 106 QAEEWGK|EH 0.060 . LdBPK_360220.1 143 SATNSER|AY 0.105 . LdBPK_360220.1 151 YFDYVAR|NT 0.083 . LdBPK_360220.1 155 VARNTVR|SK 0.109 . LdBPK_360220.1 157 RNTVRSK|DW 0.086 . LdBPK_360220.1 165 WDSCIDR|IP 0.096 . LdBPK_360220.1 180 WLEGDNK|SE 0.063 . LdBPK_360220.1 187 SESFDSR|RC 0.135 . LdBPK_360220.1 188 ESFDSRR|CG 0.102 . LdBPK_360220.1 198 VPVECIR|GL 0.078 . LdBPK_360220.1 214 SPHALQR|PP 0.101 . LdBPK_360220.1 220 RPPPPPR|AS 0.090 . ____________________________^_________________

  • Fasta :-

    >LdBPK_360220.1 ATGCGGTGGCGGCAATGGTGGTCGGCGCTTCGCTACTCCAAGTACGGTGACGTCCCTTTT GTGCTTCTCGGCGTGCTCATCGGCTGGAACTGTGATGTGAGCTGTGCCGTGAAGGGGGTA TCCATGGTGCCCACCTTAAACCCCGGTGAGTACATCCTCTTTGTCCCGTACACAATGCTT CAGGTACGCCGCTGGTTCAATGCCCCTCTGGTAAACCTGAGTGATGTGGTGGTTGTCAAG GTGTCCGATGACCTTTCAGTTTGCAAGAGAGTTGTCAAGTGCACCTCTAGCAGAGCACAG GCTGAGGAATGGGGCAAGGAGCACTACGTGGAAGTGATGCCTGCGCCGTACAGTCCACCG GTTCCACAGCACATGAATGGCGACGACGAGGACTCAACAGAGGTGGACAGTGCGACGAAC TCTGAGCGGGCCTACTTCGACTACGTTGCCCGTAACACCGTCCGCTCCAAAGACTGGGAC TCGTGCATTGATCGCATCCCCAACCCCTCTCAGTGGATCTGGCTGGAGGGCGACAACAAA TCCGAGAGCTTCGACTCTCGCCGTTGTGGACCAGTGCCGGTCGAGTGCATTCGTGGTCTT GTTCTTGCATCCATTTGGCCCTCTCCTCACGCCCTTCAGCGACCCCCACCACCACCGCGC GCATCGCAGCTTCACTGA
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  • Fasta :-

    MRWRQWWSALRYSKYGDVPFVLLGVLIGWNCDVSCAVKGVSMVPTLNPGEYILFVPYTML QVRRWFNAPLVNLSDVVVVKVSDDLSVCKRVVKCTSSRAQAEEWGKEHYVEVMPAPYSPP VPQHMNGDDEDSTEVDSATNSERAYFDYVARNTVRSKDWDSCIDRIPNPSQWIWLEGDNK SESFDSRRCGPVPVECIRGLVLASIWPSPHALQRPPPPPRASQLH

    No Results
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India