LdBPK_361430.1 | hypothetical protein, conserved

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005488      

  • Computed_GO_Functions:  binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005739      

  • Curated_GO_Components:  mitochondrion      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_361430.1OTHER0.9266050.0012000.072195
No Results

  • Fasta :-

    >LdBPK_361430.1 MHMCSHRLSFPPRRGTRLVSEGLKLDLQVERHTSLARRVRRRLCTHKTRAGKLVPMTSTL TNSNRINIPAVCRLRERNTNKTVGSGVLVAPGLLLTSATAIPTQSRATHVVATFFEGTKK SAVDVQLQPQRYYFASRYPPEMDYCLISCEEAPLFNVTPVHMALTEKGWAPVEEGDVVLI VEHPIGDVAGTAAAPLDGKATFSSTLSATGEGNFDSVQAPYVEQKRFEEVLRCRGNVSFL KSNGGWRTAGCPAFNEHGQLVGLQSQSRADGEGVVNRILSLISIVKHLFANVQLPHLPQE DVTFEDVWDTWYLTNDITRIIAILANFKGKSMTRQVIWRLCELTAKPQLVKSIASNGGIE VILQNLSLFCSDEKLSEIGLRALWNVSIGEEAHLATIIKKEGVHTILDVVESFPANETVL EFGAVLLHNIVGCRAAPNFSEAHGARALKALYPGFQQFRESVVLQKFALSFFATLARLSE EFARDLVQQHVIEHITHLIEEKPKQIFLMEIVVGFVAELAQYPHTVELMCNNTPEYAAAS MAYLIDLLIHIILEYKDLDSLLVSGNRALWGLGNVPTCRGIILENPRGIDALRISLPALI ASTHR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_361430.1.fa Sequence name : LdBPK_361430 Sequence length : 605 VALUES OF COMPUTED PARAMETERS Coef20 : 4.457 CoefTot : -0.114 ChDiff : 0 ZoneTo : 20 KR : 4 DE : 0 CleavSite : 19 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.747 1.971 0.304 0.700 MesoH : -0.209 0.689 -0.263 0.352 MuHd_075 : 24.096 17.510 7.988 4.942 MuHd_095 : 34.038 19.907 11.850 7.442 MuHd_100 : 37.982 20.020 11.748 8.143 MuHd_105 : 37.957 15.931 9.476 8.465 Hmax_075 : 5.483 7.200 0.590 2.707 Hmax_095 : 10.000 8.487 2.657 3.160 Hmax_100 : 11.600 10.700 3.031 4.310 Hmax_105 : 11.200 10.500 3.082 4.340 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2955 0.7045 DFMC : 0.3367 0.6633 This protein is probably imported in mitochondria. f(Ser) = 0.1500 f(Arg) = 0.2000 CMi = 0.42857 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 605 LdBPK_361430.1 MHMCSHRLSFPPRRGTRLVSEGLKLDLQVERHTSLARRVRRRLCTHKTRAGKLVPMTSTLTNSNRINIPAVCRLRERNTN 80 KTVGSGVLVAPGLLLTSATAIPTQSRATHVVATFFEGTKKSAVDVQLQPQRYYFASRYPPEMDYCLISCEEAPLFNVTPV 160 HMALTEKGWAPVEEGDVVLIVEHPIGDVAGTAAAPLDGKATFSSTLSATGEGNFDSVQAPYVEQKRFEEVLRCRGNVSFL 240 KSNGGWRTAGCPAFNEHGQLVGLQSQSRADGEGVVNRILSLISIVKHLFANVQLPHLPQEDVTFEDVWDTWYLTNDITRI 320 IAILANFKGKSMTRQVIWRLCELTAKPQLVKSIASNGGIEVILQNLSLFCSDEKLSEIGLRALWNVSIGEEAHLATIIKK 400 EGVHTILDVVESFPANETVLEFGAVLLHNIVGCRAAPNFSEAHGARALKALYPGFQQFRESVVLQKFALSFFATLARLSE 480 EFARDLVQQHVIEHITHLIEEKPKQIFLMEIVVGFVAELAQYPHTVELMCNNTPEYAAASMAYLIDLLIHIILEYKDLDS 560 LLVSGNRALWGLGNVPTCRGIILENPRGIDALRISLPALIASTHR 640 ................P.......................P....................................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ............................................. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LdBPK_361430.1 7 MHMCSHR|LS 0.095 . LdBPK_361430.1 13 RLSFPPR|RG 0.101 . LdBPK_361430.1 14 LSFPPRR|GT 0.145 . LdBPK_361430.1 17 PPRRGTR|LV 0.504 *ProP* LdBPK_361430.1 24 LVSEGLK|LD 0.066 . LdBPK_361430.1 31 LDLQVER|HT 0.099 . LdBPK_361430.1 37 RHTSLAR|RV 0.106 . LdBPK_361430.1 38 HTSLARR|VR 0.113 . LdBPK_361430.1 40 SLARRVR|RR 0.182 . LdBPK_361430.1 41 LARRVRR|RL 0.526 *ProP* LdBPK_361430.1 42 ARRVRRR|LC 0.215 . LdBPK_361430.1 47 RRLCTHK|TR 0.064 . LdBPK_361430.1 49 LCTHKTR|AG 0.092 . LdBPK_361430.1 52 HKTRAGK|LV 0.117 . LdBPK_361430.1 65 TLTNSNR|IN 0.101 . LdBPK_361430.1 73 NIPAVCR|LR 0.072 . LdBPK_361430.1 75 PAVCRLR|ER 0.071 . LdBPK_361430.1 77 VCRLRER|NT 0.091 . LdBPK_361430.1 81 RERNTNK|TV 0.102 . LdBPK_361430.1 106 AIPTQSR|AT 0.098 . LdBPK_361430.1 119 TFFEGTK|KS 0.055 . LdBPK_361430.1 120 FFEGTKK|SA 0.187 . LdBPK_361430.1 131 VQLQPQR|YY 0.089 . LdBPK_361430.1 137 RYYFASR|YP 0.085 . LdBPK_361430.1 167 HMALTEK|GW 0.082 . LdBPK_361430.1 199 AAPLDGK|AT 0.062 . LdBPK_361430.1 225 APYVEQK|RF 0.079 . LdBPK_361430.1 226 PYVEQKR|FE 0.147 . LdBPK_361430.1 232 RFEEVLR|CR 0.089 . LdBPK_361430.1 234 EEVLRCR|GN 0.080 . LdBPK_361430.1 241 GNVSFLK|SN 0.098 . LdBPK_361430.1 247 KSNGGWR|TA 0.115 . LdBPK_361430.1 268 GLQSQSR|AD 0.115 . LdBPK_361430.1 277 GEGVVNR|IL 0.099 . LdBPK_361430.1 286 SLISIVK|HL 0.066 . LdBPK_361430.1 319 LTNDITR|II 0.087 . LdBPK_361430.1 328 AILANFK|GK 0.060 . LdBPK_361430.1 330 LANFKGK|SM 0.109 . LdBPK_361430.1 334 KGKSMTR|QV 0.116 . LdBPK_361430.1 339 TRQVIWR|LC 0.097 . LdBPK_361430.1 346 LCELTAK|PQ 0.057 . LdBPK_361430.1 351 AKPQLVK|SI 0.079 . LdBPK_361430.1 374 LFCSDEK|LS 0.064 . LdBPK_361430.1 381 LSEIGLR|AL 0.094 . LdBPK_361430.1 399 HLATIIK|KE 0.065 . LdBPK_361430.1 400 LATIIKK|EG 0.080 . LdBPK_361430.1 434 HNIVGCR|AA 0.086 . LdBPK_361430.1 446 SEAHGAR|AL 0.134 . LdBPK_361430.1 449 HGARALK|AL 0.210 . LdBPK_361430.1 459 PGFQQFR|ES 0.075 . LdBPK_361430.1 466 ESVVLQK|FA 0.071 . LdBPK_361430.1 477 FFATLAR|LS 0.083 . LdBPK_361430.1 484 LSEEFAR|DL 0.160 . LdBPK_361430.1 502 THLIEEK|PK 0.065 . LdBPK_361430.1 504 LIEEKPK|QI 0.076 . LdBPK_361430.1 556 HIILEYK|DL 0.072 . LdBPK_361430.1 567 LLVSGNR|AL 0.081 . LdBPK_361430.1 579 GNVPTCR|GI 0.100 . LdBPK_361430.1 587 IILENPR|GI 0.103 . LdBPK_361430.1 593 RGIDALR|IS 0.087 . LdBPK_361430.1 605 LIASTHR|-- 0.094 . ____________________________^_________________

  • Fasta :-

    >LdBPK_361430.1 ATGCACATGTGCAGTCACCGCTTGTCTTTTCCCCCGCGCCGTGGCACACGCCTCGTTTCC GAAGGCCTCAAGCTGGATCTGCAAGTAGAGAGACACACCTCACTGGCTAGACGGGTGCGC AGACGTTTGTGCACGCACAAGACACGGGCGGGCAAACTAGTGCCAATGACGTCGACTCTG ACGAACAGCAACCGCATCAATATCCCTGCGGTATGCCGGCTTCGTGAGCGGAACACGAAC AAGACTGTGGGCTCGGGTGTGCTGGTGGCACCGGGGCTGCTGCTGACGTCTGCCACCGCT ATCCCTACGCAGTCGCGTGCCACGCACGTTGTGGCCACGTTCTTTGAGGGAACCAAGAAA AGCGCCGTGGATGTGCAACTGCAGCCGCAGCGCTACTACTTCGCCTCCCGCTATCCGCCA GAAATGGACTACTGCCTTATCAGCTGCGAGGAGGCGCCGCTGTTCAACGTCACACCGGTG CACATGGCACTCACTGAGAAAGGGTGGGCACCTGTGGAGGAAGGCGATGTAGTACTGATC GTAGAGCACCCAATCGGAGACGTGGCCGGCACCGCAGCAGCTCCATTGGACGGAAAAGCG ACCTTCTCCTCCACGCTATCCGCGACCGGCGAGGGCAACTTTGATTCCGTGCAGGCGCCG TACGTGGAGCAGAAGCGCTTCGAGGAAGTGCTGCGCTGCCGCGGCAATGTGAGCTTCCTC AAGTCCAACGGGGGCTGGAGGACAGCTGGCTGTCCTGCGTTCAACGAGCACGGCCAGCTG GTCGGCCTGCAATCGCAGAGCAGGGCAGATGGCGAGGGAGTCGTGAACCGCATCCTGTCG CTGATCTCTATTGTGAAGCACCTCTTCGCCAACGTGCAGCTGCCGCATCTCCCGCAGGAG GACGTCACGTTCGAGGATGTGTGGGACACGTGGTACCTGACGAACGACATCACGCGCATC ATCGCCATCCTCGCCAACTTTAAAGGCAAGTCCATGACCCGGCAGGTGATATGGCGCCTG TGCGAGCTGACGGCAAAGCCGCAGCTGGTCAAGAGTATCGCCTCGAATGGCGGCATCGAG GTTATTCTGCAGAACCTTAGTCTCTTCTGTAGCGACGAGAAGCTTTCGGAGATCGGCTTA CGCGCTCTCTGGAATGTGAGCATTGGCGAGGAGGCGCATCTAGCCACCATTATCAAAAAG GAAGGCGTGCACACCATCCTCGACGTTGTGGAGTCATTTCCTGCGAACGAGACGGTGCTC GAGTTTGGCGCGGTGCTGCTGCACAACATCGTCGGGTGCCGTGCGGCGCCAAACTTCTCT GAGGCTCACGGCGCGCGTGCGTTGAAGGCGCTATACCCCGGCTTTCAGCAGTTCCGTGAG AGCGTCGTGCTGCAGAAGTTTGCGCTGAGCTTCTTTGCAACCCTTGCGCGACTTAGCGAG GAGTTTGCACGCGATTTGGTGCAACAGCATGTCATCGAGCACATTACCCATCTCATCGAA GAGAAGCCGAAGCAAATCTTTCTCATGGAAATAGTCGTCGGGTTTGTGGCAGAGCTGGCG CAGTACCCGCATACGGTTGAGCTGATGTGTAATAACACCCCGGAGTACGCAGCCGCCAGC ATGGCGTATCTGATTGACCTCCTCATTCATATCATCTTGGAATACAAGGACCTTGATAGC CTTTTGGTGAGCGGCAATCGGGCGCTGTGGGGACTTGGTAATGTGCCCACCTGCCGCGGC ATCATTTTGGAGAACCCACGGGGCATCGATGCACTGCGCATCTCACTGCCAGCACTCATA GCAAGCACCCACCGCTAG
  • Download Fasta

  • Fasta :-

    MHMCSHRLSFPPRRGTRLVSEGLKLDLQVERHTSLARRVRRRLCTHKTRAGKLVPMTSTL TNSNRINIPAVCRLRERNTNKTVGSGVLVAPGLLLTSATAIPTQSRATHVVATFFEGTKK SAVDVQLQPQRYYFASRYPPEMDYCLISCEEAPLFNVTPVHMALTEKGWAPVEEGDVVLI VEHPIGDVAGTAAAPLDGKATFSSTLSATGEGNFDSVQAPYVEQKRFEEVLRCRGNVSFL KSNGGWRTAGCPAFNEHGQLVGLQSQSRADGEGVVNRILSLISIVKHLFANVQLPHLPQE DVTFEDVWDTWYLTNDITRIIAILANFKGKSMTRQVIWRLCELTAKPQLVKSIASNGGIE VILQNLSLFCSDEKLSEIGLRALWNVSIGEEAHLATIIKKEGVHTILDVVESFPANETVL EFGAVLLHNIVGCRAAPNFSEAHGARALKALYPGFQQFRESVVLQKFALSFFATLARLSE EFARDLVQQHVIEHITHLIEEKPKQIFLMEIVVGFVAELAQYPHTVELMCNNTPEYAAAS MAYLIDLLIHIILEYKDLDSLLVSGNRALWGLGNVPTCRGIILENPRGIDALRISLPALI ASTHR

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LdBPK_361430.1479 SLARLSEEFA0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India