LdBPK_362850.1 | mitochondrial ATP-dependent zinc metallopeptidase, putative

_IDPredictionOTHERSPmTPCS_Position
LdBPK_362850.1OTHER0.9903420.0094330.000225
No Results

  • Fasta :-

    >LdBPK_362850.1 MSYGQPQQQPLPSDLGTKERPIVVVSAPQKASWATRFWMFLLFGIALSCFISLVEEFNDR FQEGQPANKSGFARSGISGLFGSVDVKPVNLDNLEVTFDSIRGCDEAKKELEEIVEFLKD PEKFYNLGGRLPKGALLTGPPGCGKTMLAKAIAKEAGVSFFYATGSEFDEMFVGVGARRV RELFAAAKANSPALIFIDEVDALGGRRSRSDHSTSRMTLNQLLAEMDGFDSDEAVIVLAA TNTPETLDKALTRPGRLDTTITVDPPDMKGRAEVVQVYLDKIKTDSTVNAMDIARGTTGF TGAELSNLVNLAAIRAAVLNKAKVTSEEIEYAKDRVMMGAESKKIVPEEERRVTAFHEGG HALSAILLKDEGADPVHKATIVPRGNGIMGLVQQQPDRDKYSQSKRQCLARLKVCVAGRV GEEILLGPDDITTGAGSDFQQATNMARHMVRQFGFSDAMGFVDYGTPDTAEGAYISDETK LKIEKEVHRLVEQAYIETKELLLSHRAELESIANNLLKYETLSGKDLEKIIKGEAIPERP PRLSQAAESKAAPPRGGNSDQANGRRTVPIS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_362850.1.fa Sequence name : LdBPK_362850 Sequence length : 571 VALUES OF COMPUTED PARAMETERS Coef20 : 2.723 CoefTot : -1.440 ChDiff : -10 ZoneTo : 13 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.547 2.359 0.452 0.852 MesoH : -0.385 0.401 -0.335 0.237 MuHd_075 : 26.534 16.650 7.072 5.404 MuHd_095 : 16.029 10.317 3.731 3.122 MuHd_100 : 13.519 8.567 2.610 1.804 MuHd_105 : 9.862 5.206 3.075 0.239 Hmax_075 : 5.250 3.267 -1.556 2.602 Hmax_095 : 6.700 3.600 -0.563 3.070 Hmax_100 : 1.600 0.500 -2.537 1.740 Hmax_105 : 1.983 -4.638 -1.552 0.875 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9865 0.0135 DFMC : 0.9812 0.0188
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 571 LdBPK_362850.1 MSYGQPQQQPLPSDLGTKERPIVVVSAPQKASWATRFWMFLLFGIALSCFISLVEEFNDRFQEGQPANKSGFARSGISGL 80 FGSVDVKPVNLDNLEVTFDSIRGCDEAKKELEEIVEFLKDPEKFYNLGGRLPKGALLTGPPGCGKTMLAKAIAKEAGVSF 160 FYATGSEFDEMFVGVGARRVRELFAAAKANSPALIFIDEVDALGGRRSRSDHSTSRMTLNQLLAEMDGFDSDEAVIVLAA 240 TNTPETLDKALTRPGRLDTTITVDPPDMKGRAEVVQVYLDKIKTDSTVNAMDIARGTTGFTGAELSNLVNLAAIRAAVLN 320 KAKVTSEEIEYAKDRVMMGAESKKIVPEEERRVTAFHEGGHALSAILLKDEGADPVHKATIVPRGNGIMGLVQQQPDRDK 400 YSQSKRQCLARLKVCVAGRVGEEILLGPDDITTGAGSDFQQATNMARHMVRQFGFSDAMGFVDYGTPDTAEGAYISDETK 480 LKIEKEVHRLVEQAYIETKELLLSHRAELESIANNLLKYETLSGKDLEKIIKGEAIPERPPRLSQAAESKAAPPRGGNSD 560 QANGRRTVPIS 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ........... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_362850.1 18 PSDLGTK|ER 0.057 . LdBPK_362850.1 20 DLGTKER|PI 0.089 . LdBPK_362850.1 30 VVSAPQK|AS 0.078 . LdBPK_362850.1 36 KASWATR|FW 0.173 . LdBPK_362850.1 60 VEEFNDR|FQ 0.092 . LdBPK_362850.1 69 EGQPANK|SG 0.068 . LdBPK_362850.1 74 NKSGFAR|SG 0.299 . LdBPK_362850.1 87 FGSVDVK|PV 0.070 . LdBPK_362850.1 102 VTFDSIR|GC 0.086 . LdBPK_362850.1 108 RGCDEAK|KE 0.062 . LdBPK_362850.1 109 GCDEAKK|EL 0.103 . LdBPK_362850.1 119 EIVEFLK|DP 0.062 . LdBPK_362850.1 123 FLKDPEK|FY 0.065 . LdBPK_362850.1 130 FYNLGGR|LP 0.090 . LdBPK_362850.1 133 LGGRLPK|GA 0.127 . LdBPK_362850.1 145 GPPGCGK|TM 0.057 . LdBPK_362850.1 150 GKTMLAK|AI 0.073 . LdBPK_362850.1 154 LAKAIAK|EA 0.088 . LdBPK_362850.1 178 FVGVGAR|RV 0.127 . LdBPK_362850.1 179 VGVGARR|VR 0.081 . LdBPK_362850.1 181 VGARRVR|EL 0.277 . LdBPK_362850.1 188 ELFAAAK|AN 0.075 . LdBPK_362850.1 206 VDALGGR|RS 0.068 . LdBPK_362850.1 207 DALGGRR|SR 0.142 . LdBPK_362850.1 209 LGGRRSR|SD 0.354 . LdBPK_362850.1 216 SDHSTSR|MT 0.106 . LdBPK_362850.1 249 TPETLDK|AL 0.068 . LdBPK_362850.1 253 LDKALTR|PG 0.077 . LdBPK_362850.1 256 ALTRPGR|LD 0.203 . LdBPK_362850.1 269 VDPPDMK|GR 0.060 . LdBPK_362850.1 271 PPDMKGR|AE 0.093 . LdBPK_362850.1 281 VQVYLDK|IK 0.063 . LdBPK_362850.1 283 VYLDKIK|TD 0.065 . LdBPK_362850.1 295 NAMDIAR|GT 0.116 . LdBPK_362850.1 315 VNLAAIR|AA 0.072 . LdBPK_362850.1 321 RAAVLNK|AK 0.076 . LdBPK_362850.1 323 AVLNKAK|VT 0.070 . LdBPK_362850.1 333 EEIEYAK|DR 0.063 . LdBPK_362850.1 335 IEYAKDR|VM 0.103 . LdBPK_362850.1 343 MMGAESK|KI 0.068 . LdBPK_362850.1 344 MGAESKK|IV 0.179 . LdBPK_362850.1 351 IVPEEER|RV 0.089 . LdBPK_362850.1 352 VPEEERR|VT 0.117 . LdBPK_362850.1 369 LSAILLK|DE 0.081 . LdBPK_362850.1 378 GADPVHK|AT 0.064 . LdBPK_362850.1 384 KATIVPR|GN 0.132 . LdBPK_362850.1 398 VQQQPDR|DK 0.093 . LdBPK_362850.1 400 QQPDRDK|YS 0.065 . LdBPK_362850.1 405 DKYSQSK|RQ 0.058 . LdBPK_362850.1 406 KYSQSKR|QC 0.221 . LdBPK_362850.1 411 KRQCLAR|LK 0.105 . LdBPK_362850.1 413 QCLARLK|VC 0.058 . LdBPK_362850.1 419 KVCVAGR|VG 0.094 . LdBPK_362850.1 447 QATNMAR|HM 0.088 . LdBPK_362850.1 451 MARHMVR|QF 0.138 . LdBPK_362850.1 480 YISDETK|LK 0.068 . LdBPK_362850.1 482 SDETKLK|IE 0.061 . LdBPK_362850.1 485 TKLKIEK|EV 0.079 . LdBPK_362850.1 489 IEKEVHR|LV 0.141 . LdBPK_362850.1 499 QAYIETK|EL 0.059 . LdBPK_362850.1 506 ELLLSHR|AE 0.073 . LdBPK_362850.1 518 IANNLLK|YE 0.072 . LdBPK_362850.1 525 YETLSGK|DL 0.090 . LdBPK_362850.1 529 SGKDLEK|II 0.060 . LdBPK_362850.1 532 DLEKIIK|GE 0.059 . LdBPK_362850.1 539 GEAIPER|PP 0.097 . LdBPK_362850.1 542 IPERPPR|LS 0.353 . LdBPK_362850.1 550 SQAAESK|AA 0.079 . LdBPK_362850.1 555 SKAAPPR|GG 0.108 . LdBPK_362850.1 565 SDQANGR|RT 0.086 . LdBPK_362850.1 566 DQANGRR|TV 0.190 . ____________________________^_________________

  • Fasta :-

    >LdBPK_362850.1 ATGTCGTATGGGCAGCCACAACAGCAGCCGCTCCCAAGCGATCTGGGCACGAAGGAAAGA CCGATTGTGGTTGTGTCAGCCCCGCAGAAGGCTTCCTGGGCCACCCGCTTCTGGATGTTC TTGCTCTTCGGGATTGCTCTTAGCTGCTTCATCAGCCTGGTCGAGGAGTTCAACGATCGC TTTCAGGAGGGCCAGCCTGCAAACAAGTCAGGATTTGCGCGCTCTGGCATATCTGGCCTG TTCGGCTCTGTCGACGTGAAGCCGGTGAATCTGGACAACCTGGAGGTCACATTTGACAGC ATCCGCGGATGCGATGAGGCGAAAAAAGAGCTGGAGGAGATTGTTGAGTTTCTAAAGGAC CCCGAGAAGTTCTACAATTTGGGTGGGCGGCTGCCAAAAGGAGCGCTGCTCACCGGTCCG CCAGGGTGCGGGAAAACCATGCTAGCAAAGGCGATTGCCAAAGAGGCTGGCGTGAGCTTT TTCTACGCCACCGGAAGCGAGTTCGATGAGATGTTTGTTGGCGTCGGCGCCCGCCGCGTT CGCGAACTTTTCGCGGCCGCAAAGGCCAACTCACCAGCTTTGATTTTCATCGACGAGGTA GACGCATTAGGCGGTCGCCGCTCTCGTTCTGACCACAGCACCTCTCGCATGACGTTAAAC CAGCTCCTGGCAGAGATGGACGGCTTCGACTCCGACGAGGCCGTTATTGTCCTCGCCGCC ACGAACACCCCTGAAACGCTGGACAAGGCACTCACGCGCCCCGGTCGTCTGGACACCACC ATCACCGTTGATCCACCGGATATGAAAGGGCGCGCGGAGGTGGTTCAGGTGTACCTTGAC AAAATCAAGACAGACAGCACGGTCAATGCAATGGATATTGCACGCGGAACAACTGGCTTC ACAGGTGCCGAGCTTAGCAACTTGGTGAATCTGGCAGCCATCAGGGCCGCGGTGCTGAAC AAGGCGAAGGTGACCAGCGAAGAGATAGAGTACGCTAAGGACCGCGTCATGATGGGTGCC GAGAGCAAGAAGATTGTGCCGGAGGAGGAGCGTCGCGTGACCGCGTTCCACGAGGGCGGC CACGCTTTGAGCGCTATCTTGCTGAAGGACGAGGGTGCCGATCCTGTCCACAAGGCAACC ATCGTACCCCGCGGCAACGGCATTATGGGACTCGTCCAGCAGCAGCCGGACAGGGATAAG TACAGTCAAAGCAAGCGCCAGTGCCTGGCTCGCCTGAAGGTGTGTGTGGCGGGACGAGTC GGCGAAGAGATTCTTTTAGGCCCTGACGATATCACGACCGGCGCAGGCTCCGATTTTCAG CAGGCCACCAACATGGCCCGCCACATGGTGCGACAGTTCGGGTTCAGCGACGCCATGGGC TTCGTAGACTATGGTACACCCGACACCGCCGAAGGCGCCTACATTTCAGATGAGACGAAG CTCAAAATCGAAAAAGAGGTACATCGCCTTGTTGAGCAGGCCTACATCGAGACCAAGGAG CTTCTTCTGAGCCACCGCGCTGAGTTGGAGAGTATCGCCAACAACCTACTCAAGTATGAA ACGCTCAGTGGCAAGGATCTTGAGAAGATTATAAAGGGCGAGGCTATCCCAGAGCGTCCT CCGCGCCTCTCACAGGCTGCAGAGAGCAAGGCCGCGCCGCCACGAGGCGGGAACAGCGAC CAGGCAAACGGTCGGAGAACTGTTCCAATCTCATAG
  • Download Fasta

  • Fasta :-

    MSYGQPQQQPLPSDLGTKERPIVVVSAPQKASWATRFWMFLLFGIALSCFISLVEEFNDR FQEGQPANKSGFARSGISGLFGSVDVKPVNLDNLEVTFDSIRGCDEAKKELEEIVEFLKD PEKFYNLGGRLPKGALLTGPPGCGKTMLAKAIAKEAGVSFFYATGSEFDEMFVGVGARRV RELFAAAKANSPALIFIDEVDALGGRRSRSDHSTSRMTLNQLLAEMDGFDSDEAVIVLAA TNTPETLDKALTRPGRLDTTITVDPPDMKGRAEVVQVYLDKIKTDSTVNAMDIARGTTGF TGAELSNLVNLAAIRAAVLNKAKVTSEEIEYAKDRVMMGAESKKIVPEEERRVTAFHEGG HALSAILLKDEGADPVHKATIVPRGNGIMGLVQQQPDRDKYSQSKRQCLARLKVCVAGRV GEEILLGPDDITTGAGSDFQQATNMARHMVRQFGFSDAMGFVDYGTPDTAEGAYISDETK LKIEKEVHRLVEQAYIETKELLLSHRAELESIANNLLKYETLSGKDLEKIIKGEAIPERP PRLSQAAESKAAPPRGGNSDQANGRRTVPIS

  • title: ATP binding site
  • coordinates: P140,P141,G142,C143,G144,K145,T146,M147,D198,N242
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_362850.1213 SRSDHSTSRM0.994unspLdBPK_362850.1213 SRSDHSTSRM0.994unspLdBPK_362850.1213 SRSDHSTSRM0.994unspLdBPK_362850.1523 SYETLSGKDL0.998unspLdBPK_362850.1208 SGGRRSRSDH0.996unspLdBPK_362850.1210 SRRSRSDHST0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India