LdBPK_364570.1 | Regulatory particle triple-A ATPase subunit 6

_IDPredictionOTHERSPmTPCS_Position
LdBPK_364570.1OTHER0.9999410.0000120.000048
No Results

  • Fasta :-

    >LdBPK_364570.1 MLADVAAPSSSSTAPGSNTAVSDYFLQKIHELRATQKRTLDNFERLEAQRNDLNRRVRHL KEEVQMLQESGSLVVDVVRVMGKNKVLVKAGSGQGKMVVDVDKSVDFKDLTPNARVALRS GTSAIHYILPTKVDPLVSLMKVEKAGKESTYDEIGGLSRQVKEIKEVIELPVKHPKLFEA LGIEQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARMVRELFVM AREHSPSIIFMDEIDSIGSSRLESGENGDSEVQRTMLELLNQLDGFEASKNIKVIMATNR MDILDEALLRPGRIDRKIEFPAPDEAARFEILKIHSRKMNLTRGIDLKDIAKKTSNCSGA ELKAVCTEAGMFALRERRVHITHEDFVLAVAKVMHKDQDKNVSLKKMWK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_364570.1.fa Sequence name : LdBPK_364570 Sequence length : 409 VALUES OF COMPUTED PARAMETERS Coef20 : 4.099 CoefTot : 0.371 ChDiff : 6 ZoneTo : 22 KR : 0 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.753 1.082 -0.058 0.414 MesoH : -0.848 0.247 -0.427 0.163 MuHd_075 : 19.260 13.878 5.460 3.998 MuHd_095 : 15.640 12.706 4.204 2.542 MuHd_100 : 18.910 12.723 5.445 2.887 MuHd_105 : 19.052 10.206 5.196 2.812 Hmax_075 : 11.200 7.600 1.444 3.380 Hmax_095 : 12.075 8.138 1.588 3.071 Hmax_100 : 10.400 7.100 1.450 2.890 Hmax_105 : 9.400 4.900 0.996 2.410 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9593 0.0407 DFMC : 0.9109 0.0891
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 409 LdBPK_364570.1 MLADVAAPSSSSTAPGSNTAVSDYFLQKIHELRATQKRTLDNFERLEAQRNDLNRRVRHLKEEVQMLQESGSLVVDVVRV 80 MGKNKVLVKAGSGQGKMVVDVDKSVDFKDLTPNARVALRSGTSAIHYILPTKVDPLVSLMKVEKAGKESTYDEIGGLSRQ 160 VKEIKEVIELPVKHPKLFEALGIEQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARMVRELFVM 240 AREHSPSIIFMDEIDSIGSSRLESGENGDSEVQRTMLELLNQLDGFEASKNIKVIMATNRMDILDEALLRPGRIDRKIEF 320 PAPDEAARFEILKIHSRKMNLTRGIDLKDIAKKTSNCSGAELKAVCTEAGMFALRERRVHITHEDFVLAVAKVMHKDQDK 400 NVSLKKMWK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ......... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_364570.1 28 SDYFLQK|IH 0.064 . LdBPK_364570.1 33 QKIHELR|AT 0.092 . LdBPK_364570.1 37 ELRATQK|RT 0.066 . LdBPK_364570.1 38 LRATQKR|TL 0.359 . LdBPK_364570.1 45 TLDNFER|LE 0.075 . LdBPK_364570.1 50 ERLEAQR|ND 0.067 . LdBPK_364570.1 55 QRNDLNR|RV 0.145 . LdBPK_364570.1 56 RNDLNRR|VR 0.109 . LdBPK_364570.1 58 DLNRRVR|HL 0.347 . LdBPK_364570.1 61 RRVRHLK|EE 0.157 . LdBPK_364570.1 79 LVVDVVR|VM 0.085 . LdBPK_364570.1 83 VVRVMGK|NK 0.059 . LdBPK_364570.1 85 RVMGKNK|VL 0.070 . LdBPK_364570.1 89 KNKVLVK|AG 0.081 . LdBPK_364570.1 96 AGSGQGK|MV 0.118 . LdBPK_364570.1 103 MVVDVDK|SV 0.114 . LdBPK_364570.1 108 DKSVDFK|DL 0.096 . LdBPK_364570.1 115 DLTPNAR|VA 0.090 . LdBPK_364570.1 119 NARVALR|SG 0.135 . LdBPK_364570.1 132 HYILPTK|VD 0.055 . LdBPK_364570.1 141 PLVSLMK|VE 0.059 . LdBPK_364570.1 144 SLMKVEK|AG 0.066 . LdBPK_364570.1 147 KVEKAGK|ES 0.060 . LdBPK_364570.1 159 EIGGLSR|QV 0.103 . LdBPK_364570.1 162 GLSRQVK|EI 0.253 . LdBPK_364570.1 165 RQVKEIK|EV 0.075 . LdBPK_364570.1 173 VIELPVK|HP 0.053 . LdBPK_364570.1 176 LPVKHPK|LF 0.077 . LdBPK_364570.1 187 LGIEQPK|GV 0.077 . LdBPK_364570.1 199 GPPGTGK|TL 0.059 . LdBPK_364570.1 204 GKTLLAR|AV 0.134 . LdBPK_364570.1 216 TDCTFIR|VS 0.150 . LdBPK_364570.1 225 GAELVQK|YI 0.105 . LdBPK_364570.1 232 YIGEGAR|MV 0.141 . LdBPK_364570.1 235 EGARMVR|EL 0.208 . LdBPK_364570.1 242 ELFVMAR|EH 0.105 . LdBPK_364570.1 261 DSIGSSR|LE 0.091 . LdBPK_364570.1 274 GDSEVQR|TM 0.128 . LdBPK_364570.1 290 DGFEASK|NI 0.062 . LdBPK_364570.1 293 EASKNIK|VI 0.073 . LdBPK_364570.1 300 VIMATNR|MD 0.083 . LdBPK_364570.1 310 LDEALLR|PG 0.075 . LdBPK_364570.1 313 ALLRPGR|ID 0.208 . LdBPK_364570.1 316 RPGRIDR|KI 0.282 . LdBPK_364570.1 317 PGRIDRK|IE 0.078 . LdBPK_364570.1 328 APDEAAR|FE 0.099 . LdBPK_364570.1 333 ARFEILK|IH 0.068 . LdBPK_364570.1 337 ILKIHSR|KM 0.074 . LdBPK_364570.1 338 LKIHSRK|MN 0.097 . LdBPK_364570.1 343 RKMNLTR|GI 0.123 . LdBPK_364570.1 348 TRGIDLK|DI 0.096 . LdBPK_364570.1 352 DLKDIAK|KT 0.064 . LdBPK_364570.1 353 LKDIAKK|TS 0.100 . LdBPK_364570.1 363 CSGAELK|AV 0.097 . LdBPK_364570.1 375 AGMFALR|ER 0.084 . LdBPK_364570.1 377 MFALRER|RV 0.119 . LdBPK_364570.1 378 FALRERR|VH 0.322 . LdBPK_364570.1 392 FVLAVAK|VM 0.061 . LdBPK_364570.1 396 VAKVMHK|DQ 0.072 . LdBPK_364570.1 400 MHKDQDK|NV 0.082 . LdBPK_364570.1 405 DKNVSLK|KM 0.072 . LdBPK_364570.1 406 KNVSLKK|MW 0.111 . LdBPK_364570.1 409 SLKKMWK|-- 0.069 . ____________________________^_________________

  • Fasta :-

    >LdBPK_364570.1 ATGCTCGCTGACGTTGCCGCGCCGTCGTCGTCGTCAACGGCGCCGGGGAGCAACACCGCC GTCTCTGACTACTTTCTTCAAAAGATCCACGAGCTGCGCGCGACGCAGAAGCGAACCCTC GACAATTTCGAGCGCCTCGAAGCCCAGCGCAATGACCTTAACCGCCGTGTCCGCCACCTC AAGGAGGAGGTGCAGATGCTGCAGGAATCCGGCTCCCTGGTCGTGGACGTTGTCAGAGTA ATGGGCAAGAACAAGGTGCTGGTGAAGGCCGGTTCTGGGCAGGGAAAGATGGTGGTGGAT GTGGACAAGTCGGTGGACTTCAAGGACTTGACCCCCAACGCCCGCGTTGCCCTGCGCAGC GGCACCTCGGCAATCCACTACATTCTGCCCACGAAGGTCGACCCGCTCGTGTCTCTCATG AAGGTCGAGAAGGCTGGCAAAGAGTCGACCTATGACGAGATCGGCGGTCTGTCGCGCCAG GTGAAGGAGATCAAGGAAGTGATCGAGCTCCCCGTGAAGCACCCAAAGCTGTTCGAGGCT CTTGGCATTGAGCAGCCGAAGGGTGTGCTTCTGTATGGCCCGCCTGGCACCGGTAAGACG CTGCTTGCGCGCGCGGTGGCACACCACACCGACTGCACCTTTATCCGTGTCAGTGGCGCG GAGCTGGTGCAGAAGTACATCGGCGAGGGTGCCCGCATGGTGCGTGAGTTGTTCGTTATG GCGCGTGAGCACAGCCCCTCAATCATTTTCATGGATGAAATCGACTCCATCGGCTCCTCG CGCTTGGAGTCGGGCGAGAACGGTGACAGCGAGGTGCAGCGTACCATGCTTGAGCTCCTG AACCAGTTGGATGGCTTTGAGGCCTCCAAAAACATCAAGGTGATTATGGCGACCAACCGC ATGGACATCCTTGACGAGGCGCTGCTGCGCCCTGGTCGCATCGACCGTAAGATTGAGTTT CCCGCCCCGGACGAAGCAGCCCGCTTTGAGATTCTCAAGATCCACTCGCGCAAGATGAAT CTGACACGCGGCATTGACCTCAAGGACATTGCCAAGAAAACGTCCAACTGCTCTGGCGCC GAGCTGAAGGCGGTGTGCACCGAGGCAGGCATGTTTGCTCTACGCGAGCGCCGCGTGCAC ATCACGCACGAGGACTTTGTGCTCGCTGTTGCCAAGGTGATGCACAAGGACCAGGACAAG AACGTGTCGTTGAAGAAGATGTGGAAGTAG
  • Download Fasta

  • Fasta :-

    MLADVAAPSSSSTAPGSNTAVSDYFLQKIHELRATQKRTLDNFERLEAQRNDLNRRVRHL KEEVQMLQESGSLVVDVVRVMGKNKVLVKAGSGQGKMVVDVDKSVDFKDLTPNARVALRS GTSAIHYILPTKVDPLVSLMKVEKAGKESTYDEIGGLSRQVKEIKEVIELPVKHPKLFEA LGIEQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGAELVQKYIGEGARMVRELFVM AREHSPSIIFMDEIDSIGSSRLESGENGDSEVQRTMLELLNQLDGFEASKNIKVIMATNR MDILDEALLRPGRIDRKIEFPAPDEAARFEILKIHSRKMNLTRGIDLKDIAKKTSNCSGA ELKAVCTEAGMFALRERRVHITHEDFVLAVAKVMHKDQDKNVSLKKMWK

  • title: ATP binding site
  • coordinates: P194,P195,G196,T197,G198,K199,T200,L201,D252,N299
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_364570.1245 SAREHSPSII0.991unspLdBPK_364570.1245 SAREHSPSII0.991unspLdBPK_364570.1245 SAREHSPSII0.991unspLdBPK_364570.1264 SSRLESGENG0.997unspLdBPK_364570.1149 SAGKESTYDE0.995unspLdBPK_364570.1218 SFIRVSGAEL0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India