LdBPK_364670.1 | mitochondrial intermediate peptidase, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004222      

  • Computed_GO_Functions:  metalloendopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_364670.1mTP0.0001590.0000330.999808CS pos: 28-29. ARF-AS. Pr: 0.7773
No Results

  • Fasta :-

    >LdBPK_364670.1 MLRRLVSCASPLRLRGCGAATVFGNARFASTANASAAPPTSSPKAPTYGTVPDIPNLNFL SSPDNLLNTVDGTVDVCEALLKEIPKAKTPQAKHDLIDSTSNVLCLLLDPCEFVRQIHPD ENYKRSASLAFQKGYEYMCEVNSRRDLYDVIKELDSSEGRKGLTPESVKNVVQLRRDMES NGIHLPDAQRAKVTEMNIEKEELAMRFLTEQGSANPFGTLRYLLQCRYELAQLLGFESYA EQQLRGTMLENQENVWHFLCSIASKYRQQAEAEMDLIRKHVGEVRNRANITDEYRARVAS SMRRDAEPENALEYFSVANCVRGIQCLCSEVFGVKLEEVPLNPEEVINNSVKKFHVYDEH KRFLGVIVLDMYMNEMKYCQAGHLTLQLGCVPHQEALATVGLRLPKRQYPVVVLTANVGA LKPAQRRPDGTYDDEATLMQPNEVTTVFHEFGHAMHTIFGQTQVQNLAGTRASIDYVETF SQLFEQFLSSHEFLKLWAHRINTREPISFDIVQKRNSAANMFKHLDMLDQVVLSAVDQAL HGPQPLTVYFPHGDQGHVGKRTLGDLGDYGRGGFNMARALIQVAKPVSVAEPTETGVLST LSFEHLSGYPAGYYGYLYSLSVARRIWTKKFERDPLNRDAGRELAEKVMCHGAACDPRET IEKYLGDNLTDIDIWA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_364670.1.fa Sequence name : LdBPK_364670 Sequence length : 676 VALUES OF COMPUTED PARAMETERS Coef20 : 4.938 CoefTot : 0.189 ChDiff : -11 ZoneTo : 52 KR : 6 DE : 0 CleavSite : 29 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.806 1.059 0.068 0.432 MesoH : -0.339 0.226 -0.268 0.189 MuHd_075 : 26.275 15.539 6.512 5.778 MuHd_095 : 25.770 19.887 6.734 6.485 MuHd_100 : 19.389 16.630 4.866 5.468 MuHd_105 : 23.486 15.066 6.099 5.553 Hmax_075 : 13.125 13.883 5.872 4.069 Hmax_095 : 3.587 12.775 2.338 2.476 Hmax_100 : 16.400 17.200 4.369 5.330 Hmax_105 : 9.500 13.000 0.539 2.459 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0686 0.9314 DFMC : 0.0332 0.9668 This protein is probably imported in mitochondria. f(Ser) = 0.1154 f(Arg) = 0.0962 CMi = 0.56391 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 676 LdBPK_364670.1 MLRRLVSCASPLRLRGCGAATVFGNARFASTANASAAPPTSSPKAPTYGTVPDIPNLNFLSSPDNLLNTVDGTVDVCEAL 80 LKEIPKAKTPQAKHDLIDSTSNVLCLLLDPCEFVRQIHPDENYKRSASLAFQKGYEYMCEVNSRRDLYDVIKELDSSEGR 160 KGLTPESVKNVVQLRRDMESNGIHLPDAQRAKVTEMNIEKEELAMRFLTEQGSANPFGTLRYLLQCRYELAQLLGFESYA 240 EQQLRGTMLENQENVWHFLCSIASKYRQQAEAEMDLIRKHVGEVRNRANITDEYRARVASSMRRDAEPENALEYFSVANC 320 VRGIQCLCSEVFGVKLEEVPLNPEEVINNSVKKFHVYDEHKRFLGVIVLDMYMNEMKYCQAGHLTLQLGCVPHQEALATV 400 GLRLPKRQYPVVVLTANVGALKPAQRRPDGTYDDEATLMQPNEVTTVFHEFGHAMHTIFGQTQVQNLAGTRASIDYVETF 480 SQLFEQFLSSHEFLKLWAHRINTREPISFDIVQKRNSAANMFKHLDMLDQVVLSAVDQALHGPQPLTVYFPHGDQGHVGK 560 RTLGDLGDYGRGGFNMARALIQVAKPVSVAEPTETGVLSTLSFEHLSGYPAGYYGYLYSLSVARRIWTKKFERDPLNRDA 640 GRELAEKVMCHGAACDPRETIEKYLGDNLTDIDIWA 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LdBPK_364670.1 3 ----MLR|RL 0.068 . LdBPK_364670.1 4 ---MLRR|LV 0.175 . LdBPK_364670.1 13 SCASPLR|LR 0.088 . LdBPK_364670.1 15 ASPLRLR|GC 0.101 . LdBPK_364670.1 27 TVFGNAR|FA 0.166 . LdBPK_364670.1 44 PPTSSPK|AP 0.063 . LdBPK_364670.1 82 VCEALLK|EI 0.059 . LdBPK_364670.1 86 LLKEIPK|AK 0.072 . LdBPK_364670.1 88 KEIPKAK|TP 0.069 . LdBPK_364670.1 93 AKTPQAK|HD 0.064 . LdBPK_364670.1 115 DPCEFVR|QI 0.120 . LdBPK_364670.1 124 HPDENYK|RS 0.056 . LdBPK_364670.1 125 PDENYKR|SA 0.362 . LdBPK_364670.1 133 ASLAFQK|GY 0.066 . LdBPK_364670.1 144 MCEVNSR|RD 0.068 . LdBPK_364670.1 145 CEVNSRR|DL 0.225 . LdBPK_364670.1 152 DLYDVIK|EL 0.071 . LdBPK_364670.1 160 LDSSEGR|KG 0.080 . LdBPK_364670.1 161 DSSEGRK|GL 0.102 . LdBPK_364670.1 169 LTPESVK|NV 0.067 . LdBPK_364670.1 175 KNVVQLR|RD 0.088 . LdBPK_364670.1 176 NVVQLRR|DM 0.163 . LdBPK_364670.1 190 HLPDAQR|AK 0.079 . LdBPK_364670.1 192 PDAQRAK|VT 0.074 . LdBPK_364670.1 200 TEMNIEK|EE 0.058 . LdBPK_364670.1 206 KEELAMR|FL 0.102 . LdBPK_364670.1 221 NPFGTLR|YL 0.091 . LdBPK_364670.1 227 RYLLQCR|YE 0.085 . LdBPK_364670.1 245 YAEQQLR|GT 0.091 . LdBPK_364670.1 265 LCSIASK|YR 0.093 . LdBPK_364670.1 267 SIASKYR|QQ 0.116 . LdBPK_364670.1 278 AEMDLIR|KH 0.074 . LdBPK_364670.1 279 EMDLIRK|HV 0.123 . LdBPK_364670.1 285 KHVGEVR|NR 0.075 . LdBPK_364670.1 287 VGEVRNR|AN 0.086 . LdBPK_364670.1 295 NITDEYR|AR 0.069 . LdBPK_364670.1 297 TDEYRAR|VA 0.128 . LdBPK_364670.1 303 RVASSMR|RD 0.084 . LdBPK_364670.1 304 VASSMRR|DA 0.341 . LdBPK_364670.1 322 SVANCVR|GI 0.096 . LdBPK_364670.1 335 SEVFGVK|LE 0.058 . LdBPK_364670.1 352 VINNSVK|KF 0.070 . LdBPK_364670.1 353 INNSVKK|FH 0.132 . LdBPK_364670.1 361 HVYDEHK|RF 0.058 . LdBPK_364670.1 362 VYDEHKR|FL 0.244 . LdBPK_364670.1 377 MYMNEMK|YC 0.074 . LdBPK_364670.1 403 LATVGLR|LP 0.070 . LdBPK_364670.1 406 VGLRLPK|RQ 0.092 . LdBPK_364670.1 407 GLRLPKR|QY 0.192 . LdBPK_364670.1 422 ANVGALK|PA 0.063 . LdBPK_364670.1 426 ALKPAQR|RP 0.085 . LdBPK_364670.1 427 LKPAQRR|PD 0.159 . LdBPK_364670.1 471 QNLAGTR|AS 0.091 . LdBPK_364670.1 495 SSHEFLK|LW 0.071 . LdBPK_364670.1 500 LKLWAHR|IN 0.094 . LdBPK_364670.1 504 AHRINTR|EP 0.073 . LdBPK_364670.1 514 SFDIVQK|RN 0.069 . LdBPK_364670.1 515 FDIVQKR|NS 0.194 . LdBPK_364670.1 523 SAANMFK|HL 0.075 . LdBPK_364670.1 560 DQGHVGK|RT 0.070 . LdBPK_364670.1 561 QGHVGKR|TL 0.268 . LdBPK_364670.1 571 DLGDYGR|GG 0.081 . LdBPK_364670.1 578 GGFNMAR|AL 0.107 . LdBPK_364670.1 585 ALIQVAK|PV 0.144 . LdBPK_364670.1 624 YSLSVAR|RI 0.090 . LdBPK_364670.1 625 SLSVARR|IW 0.271 . LdBPK_364670.1 629 ARRIWTK|KF 0.069 . LdBPK_364670.1 630 RRIWTKK|FE 0.128 . LdBPK_364670.1 633 WTKKFER|DP 0.077 . LdBPK_364670.1 638 ERDPLNR|DA 0.182 . LdBPK_364670.1 642 LNRDAGR|EL 0.111 . LdBPK_364670.1 647 GRELAEK|VM 0.060 . LdBPK_364670.1 658 GAACDPR|ET 0.106 . LdBPK_364670.1 663 PRETIEK|YL 0.095 . ____________________________^_________________

  • Fasta :-

    >LdBPK_364670.1 ATGCTTCGCCGACTTGTATCCTGCGCATCGCCGTTGCGCTTGCGGGGCTGTGGTGCGGCC ACTGTCTTTGGCAATGCCCGTTTTGCTTCCACGGCGAACGCATCGGCAGCACCGCCCACG AGCTCCCCCAAGGCGCCGACCTACGGCACTGTTCCCGATATCCCGAACCTGAACTTCCTT TCCAGTCCTGATAACCTGCTTAACACCGTGGATGGCACGGTGGACGTGTGCGAGGCGTTG CTGAAGGAGATTCCAAAGGCGAAGACGCCGCAGGCAAAGCATGACCTAATCGATTCCACC AGCAACGTGCTCTGCCTGCTGCTGGACCCGTGCGAATTTGTACGTCAAATCCACCCAGAC GAGAACTACAAGCGTAGCGCCTCCCTCGCCTTCCAGAAGGGGTACGAGTACATGTGCGAG GTGAACTCGCGGCGCGACCTCTACGACGTCATTAAGGAGCTAGATAGCTCGGAAGGCCGC AAAGGCCTGACGCCAGAGTCCGTCAAGAATGTTGTGCAGCTGAGGAGGGACATGGAGAGC AACGGCATTCATCTTCCAGACGCGCAGCGCGCCAAGGTGACGGAGATGAACATCGAGAAG GAAGAACTGGCGATGCGCTTCTTGACAGAGCAGGGCTCGGCCAACCCTTTCGGCACTCTC CGGTACCTTCTTCAGTGCCGCTACGAGCTGGCGCAGTTGCTGGGGTTCGAGAGCTACGCA GAGCAACAGCTGCGCGGGACGATGCTGGAGAATCAGGAGAACGTGTGGCACTTCCTTTGT AGCATTGCGAGCAAATATCGTCAGCAGGCGGAGGCGGAGATGGACCTCATCCGTAAACAC GTCGGCGAGGTGCGCAATCGTGCCAACATCACCGATGAATACCGAGCCCGCGTTGCGTCC TCGATGCGGCGCGATGCAGAGCCGGAGAATGCGCTCGAATACTTCTCCGTCGCGAACTGC GTGCGCGGCATTCAGTGTCTCTGCTCGGAGGTCTTCGGCGTGAAGCTGGAGGAGGTCCCC CTCAACCCCGAAGAGGTCATCAATAACAGTGTCAAGAAGTTTCATGTGTACGATGAGCAC AAGAGGTTTCTCGGCGTGATTGTGCTGGACATGTACATGAACGAGATGAAGTACTGCCAG GCTGGCCACTTGACGCTGCAGCTCGGCTGCGTGCCGCACCAGGAGGCCCTCGCCACAGTG GGGCTGCGCTTACCGAAGCGGCAGTACCCGGTAGTTGTGCTCACGGCAAATGTTGGCGCG CTGAAGCCGGCGCAGCGCCGCCCCGATGGCACATACGACGACGAGGCCACCCTAATGCAG CCGAACGAGGTGACGACCGTTTTCCATGAGTTTGGCCACGCCATGCATACCATCTTTGGA CAGACCCAGGTGCAAAACTTGGCCGGCACGCGCGCAAGCATCGACTACGTCGAGACTTTC TCGCAGCTCTTTGAGCAGTTCCTCTCGTCCCACGAGTTCTTGAAGCTGTGGGCGCACCGC ATCAACACCCGTGAGCCGATCTCCTTCGACATTGTGCAGAAGCGCAACAGCGCGGCGAAC ATGTTCAAGCACCTGGATATGCTGGACCAGGTGGTGCTCTCCGCGGTGGACCAGGCGCTG CACGGGCCGCAGCCGTTAACGGTGTACTTCCCGCACGGCGACCAGGGTCACGTGGGCAAG CGCACGCTCGGTGACCTGGGCGACTACGGCCGTGGTGGTTTCAACATGGCACGGGCCCTC ATTCAGGTGGCGAAGCCGGTCTCCGTCGCGGAGCCGACCGAGACCGGCGTCCTGAGTACG CTCTCCTTTGAGCACCTTTCGGGATACCCTGCAGGCTACTACGGCTACCTCTACAGCCTG AGCGTGGCGCGTCGAATCTGGACGAAAAAGTTCGAGCGCGACCCGCTCAACCGCGATGCC GGGCGTGAGTTGGCAGAGAAAGTCATGTGCCACGGCGCCGCCTGTGACCCACGCGAAACC ATCGAGAAATACCTCGGCGACAACCTCACAGATATTGATATTTGGGCCTAA
  • Download Fasta

  • Fasta :-

    MLRRLVSCASPLRLRGCGAATVFGNARFASTANASAAPPTSSPKAPTYGTVPDIPNLNFL SSPDNLLNTVDGTVDVCEALLKEIPKAKTPQAKHDLIDSTSNVLCLLLDPCEFVRQIHPD ENYKRSASLAFQKGYEYMCEVNSRRDLYDVIKELDSSEGRKGLTPESVKNVVQLRRDMES NGIHLPDAQRAKVTEMNIEKEELAMRFLTEQGSANPFGTLRYLLQCRYELAQLLGFESYA EQQLRGTMLENQENVWHFLCSIASKYRQQAEAEMDLIRKHVGEVRNRANITDEYRARVAS SMRRDAEPENALEYFSVANCVRGIQCLCSEVFGVKLEEVPLNPEEVINNSVKKFHVYDEH KRFLGVIVLDMYMNEMKYCQAGHLTLQLGCVPHQEALATVGLRLPKRQYPVVVLTANVGA LKPAQRRPDGTYDDEATLMQPNEVTTVFHEFGHAMHTIFGQTQVQNLAGTRASIDYVETF SQLFEQFLSSHEFLKLWAHRINTREPISFDIVQKRNSAANMFKHLDMLDQVVLSAVDQAL HGPQPLTVYFPHGDQGHVGKRTLGDLGDYGRGGFNMARALIQVAKPVSVAEPTETGVLST LSFEHLSGYPAGYYGYLYSLSVARRIWTKKFERDPLNRDAGRELAEKVMCHGAACDPRET IEKYLGDNLTDIDIWA

  • title: Zn binding site
  • coordinates: H449,H453,E478
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_364670.1301 SRVASSMRRD0.992unspLdBPK_364670.1301 SRVASSMRRD0.992unspLdBPK_364670.1301 SRVASSMRRD0.992unspLdBPK_364670.1534 SQVVLSAVDQ0.99unspLdBPK_364670.1143 SCEVNSRRDL0.993unspLdBPK_364670.1156 SKELDSSEGR0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India