LdBPK_366280.1 | OTU-like cysteine protease, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0097014      GO:0005737      GO:0031981      

  • Curated_GO_Components:  ciliary plasm      cytoplasm      nuclear lumen      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LdBPK_366280.1SP0.2600730.7385370.001391CS pos: 29-30. SHA-CA. Pr: 0.8223
No Results

  • Fasta :-

    >LdBPK_366280.1 MGCTAHTQTHTRSLCLTTFALLHWPVSHACATQCLHVFSLLRLQQSTHEVLRSRCAFSTF LFLFCIHRKASVPQPLTALSCGRCAPTVEPRFSVFSHRPANTQTHTQTQTERHLPCIMSI SVRIRTPKSSTPEQVELNSSGTWGEAAALLSRKSEVALERLRVLAGFPPKAVDLAADSPL SALKLRANDMLIVQEGEAKVQLGNRGERYLPPAPERAHLTRRRCPADNSCLFHACAYVLR DKSRTEGPQLRQECVQAVLDHPEMFNVNTLGMDPLAYASWLSEKDTWGGAIELEILSFLY KTEIFALDLQSVTLQRFGTGMGYTVRAFLVYTGNHYDCIAMNPVYNPTSEREDQTLFSSR DENVLARAKRFVAEEGQKMKEGKST
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/LdBPK_366280.1.fa Sequence name : LdBPK_366280 Sequence length : 385 VALUES OF COMPUTED PARAMETERS Coef20 : 4.460 CoefTot : -1.436 ChDiff : 6 ZoneTo : 132 KR : 13 DE : 3 CleavSite : 125 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.376 1.576 0.196 0.492 MesoH : 0.059 0.561 -0.181 0.263 MuHd_075 : 36.502 24.541 10.186 8.915 MuHd_095 : 30.832 20.029 9.605 7.122 MuHd_100 : 30.598 20.743 8.835 6.878 MuHd_105 : 39.271 24.568 9.778 8.831 Hmax_075 : 9.917 18.100 1.654 7.163 Hmax_095 : 16.200 16.013 5.985 4.349 Hmax_100 : 9.800 15.800 5.985 4.670 Hmax_105 : 10.700 15.600 1.414 4.600 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2101 0.7899 DFMC : 0.0382 0.9618 This protein is probably imported in mitochondria. f(Ser) = 0.1061 f(Arg) = 0.0833 CMi = 0.56818 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 385 LdBPK_366280.1 MGCTAHTQTHTRSLCLTTFALLHWPVSHACATQCLHVFSLLRLQQSTHEVLRSRCAFSTFLFLFCIHRKASVPQPLTALS 80 CGRCAPTVEPRFSVFSHRPANTQTHTQTQTERHLPCIMSISVRIRTPKSSTPEQVELNSSGTWGEAAALLSRKSEVALER 160 LRVLAGFPPKAVDLAADSPLSALKLRANDMLIVQEGEAKVQLGNRGERYLPPAPERAHLTRRRCPADNSCLFHACAYVLR 240 DKSRTEGPQLRQECVQAVLDHPEMFNVNTLGMDPLAYASWLSEKDTWGGAIELEILSFLYKTEIFALDLQSVTLQRFGTG 320 MGYTVRAFLVYTGNHYDCIAMNPVYNPTSEREDQTLFSSRDENVLARAKRFVAEEGQKMKEGKST 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................................................P............... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LdBPK_366280.1 12 HTQTHTR|SL 0.139 . LdBPK_366280.1 42 HVFSLLR|LQ 0.064 . LdBPK_366280.1 52 STHEVLR|SR 0.117 . LdBPK_366280.1 54 HEVLRSR|CA 0.088 . LdBPK_366280.1 68 FLFCIHR|KA 0.092 . LdBPK_366280.1 69 LFCIHRK|AS 0.088 . LdBPK_366280.1 83 TALSCGR|CA 0.119 . LdBPK_366280.1 91 APTVEPR|FS 0.093 . LdBPK_366280.1 98 FSVFSHR|PA 0.157 . LdBPK_366280.1 112 TQTQTER|HL 0.092 . LdBPK_366280.1 123 IMSISVR|IR 0.101 . LdBPK_366280.1 125 SISVRIR|TP 0.104 . LdBPK_366280.1 128 VRIRTPK|SS 0.364 . LdBPK_366280.1 152 AAALLSR|KS 0.086 . LdBPK_366280.1 153 AALLSRK|SE 0.095 . LdBPK_366280.1 160 SEVALER|LR 0.071 . LdBPK_366280.1 162 VALERLR|VL 0.063 . LdBPK_366280.1 170 LAGFPPK|AV 0.089 . LdBPK_366280.1 184 SPLSALK|LR 0.055 . LdBPK_366280.1 186 LSALKLR|AN 0.121 . LdBPK_366280.1 199 VQEGEAK|VQ 0.056 . LdBPK_366280.1 205 KVQLGNR|GE 0.085 . LdBPK_366280.1 208 LGNRGER|YL 0.250 . LdBPK_366280.1 216 LPPAPER|AH 0.080 . LdBPK_366280.1 221 ERAHLTR|RR 0.112 . LdBPK_366280.1 222 RAHLTRR|RC 0.115 . LdBPK_366280.1 223 AHLTRRR|CP 0.102 . LdBPK_366280.1 240 ACAYVLR|DK 0.121 . LdBPK_366280.1 242 AYVLRDK|SR 0.066 . LdBPK_366280.1 244 VLRDKSR|TE 0.167 . LdBPK_366280.1 251 TEGPQLR|QE 0.085 . LdBPK_366280.1 284 ASWLSEK|DT 0.079 . LdBPK_366280.1 301 ILSFLYK|TE 0.070 . LdBPK_366280.1 316 QSVTLQR|FG 0.101 . LdBPK_366280.1 326 GMGYTVR|AF 0.083 . LdBPK_366280.1 351 YNPTSER|ED 0.079 . LdBPK_366280.1 360 QTLFSSR|DE 0.086 . LdBPK_366280.1 367 DENVLAR|AK 0.096 . LdBPK_366280.1 369 NVLARAK|RF 0.060 . LdBPK_366280.1 370 VLARAKR|FV 0.809 *ProP* LdBPK_366280.1 378 VAEEGQK|MK 0.059 . LdBPK_366280.1 380 EEGQKMK|EG 0.060 . LdBPK_366280.1 383 QKMKEGK|ST 0.127 . ____________________________^_________________

  • Fasta :-

    >LdBPK_366280.1 ATGGGATGCACGGCACACACACAAACACACACACGCTCTCTCTGTCTGACAACATTTGCT CTTCTTCACTGGCCTGTCTCTCACGCGTGTGCTACGCAATGTCTTCACGTCTTCTCATTG CTACGTTTGCAGCAGAGCACACACGAAGTGCTGCGTTCCCGTTGCGCCTTCTCCACCTTT TTGTTTCTATTTTGCATCCACCGAAAGGCGTCCGTGCCGCAGCCCCTCACTGCTTTATCT TGTGGGAGGTGCGCACCCACAGTCGAACCGCGCTTCTCAGTATTCTCGCACCGCCCTGCA AACACACAGACACACACACAAACACAGACCGAAAGACACCTGCCGTGCATAATGTCCATA TCCGTACGGATTCGTACACCGAAGAGCAGCACACCGGAGCAGGTGGAGCTGAACTCTAGC GGAACTTGGGGCGAGGCTGCCGCGCTGCTGTCCCGGAAATCGGAGGTAGCACTCGAGCGG CTGCGCGTGCTCGCCGGCTTCCCCCCAAAGGCGGTGGATCTGGCCGCCGACAGCCCCCTT AGTGCACTCAAGCTGCGCGCTAATGACATGCTGATTGTTCAAGAGGGAGAGGCCAAAGTG CAGCTCGGTAACAGAGGAGAGCGCTATCTTCCCCCGGCCCCTGAGCGGGCCCACCTCACG CGCCGTCGATGCCCAGCGGACAACAGCTGCCTTTTCCACGCCTGCGCCTACGTGCTGCGC GACAAGAGCCGCACCGAGGGGCCGCAGCTCCGGCAGGAGTGCGTGCAGGCCGTACTGGAT CACCCCGAAATGTTCAACGTGAATACGCTGGGCATGGACCCGCTCGCGTACGCCTCGTGG CTTTCGGAGAAGGACACGTGGGGTGGCGCCATTGAGCTGGAGATACTGTCCTTTTTGTAC AAGACGGAGATCTTCGCTTTGGACCTGCAGTCGGTCACCTTGCAGCGCTTCGGCACAGGA ATGGGCTACACCGTGCGCGCTTTTCTCGTGTACACGGGCAACCACTACGACTGCATTGCC ATGAACCCGGTGTACAACCCCACCTCCGAGCGCGAGGACCAGACGCTGTTCAGCAGCCGT GACGAGAACGTCTTGGCGCGGGCGAAGCGTTTCGTTGCTGAGGAAGGGCAGAAGATGAAG GAGGGCAAGTCCACATAG
  • Download Fasta

  • Fasta :-

    MGCTAHTQTHTRSLCLTTFALLHWPVSHACATQCLHVFSLLRLQQSTHEVLRSRCAFSTF LFLFCIHRKASVPQPLTALSCGRCAPTVEPRFSVFSHRPANTQTHTQTQTERHLPCIMSI SVRIRTPKSSTPEQVELNSSGTWGEAAALLSRKSEVALERLRVLAGFPPKAVDLAADSPL SALKLRANDMLIVQEGEAKVQLGNRGERYLPPAPERAHLTRRRCPADNSCLFHACAYVLR DKSRTEGPQLRQECVQAVLDHPEMFNVNTLGMDPLAYASWLSEKDTWGGAIELEILSFLY KTEIFALDLQSVTLQRFGTGMGYTVRAFLVYTGNHYDCIAMNPVYNPTSEREDQTLFSSR DENVLARAKRFVAEEGQKMKEGKST

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LdBPK_366280.1282 SASWLSEKDT0.993unspLdBPK_366280.1282 SASWLSEKDT0.993unspLdBPK_366280.1282 SASWLSEKDT0.993unspLdBPK_366280.1358 SQTLFSSRDE0.99unspLdBPK_366280.1130 STPKSSTPEQ0.995unspLdBPK_366280.1243 SLRDKSRTEG0.997unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India