LmjF.02.0710 | ATP-dependent Clp protease subunit, heat shock protein 78 (HSP78), putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005524      

  • Computed_GO_Functions:  ATP binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005739      

  • Curated_GO_Components:  mitochondrion      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.02.0710mTP0.0414270.0051780.953395CS pos: 62-63. CRW-QS. Pr: 0.3121
No Results

  • Fasta :-

    >LmjF.02.0710 MLRRCLAQASTALRCGSTAALAAPFAPFGCGATRTAAVDAVACSRLASSTAAYPTLRTSC RWQSTGVTPWKSSGNSGGGGNGGQQQGRTWVNPNAVPPGEFLKKYARDLTEEARTGRLDP IVGREEVIRRTIQVVSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGEVPESIKDRQVYA LDMGTLVAGAKFRGEFEERLKGVLKDTIESHGKVILFIDELHTLVGAGSSGDGSMDAANL LKPSLARGELHCIGATTLDEYRQHIEKDAALARRFQSVLVTEPTVEETISILRGIKEKYE AHHGCLIKDEALVYAAVNSHRYLSERRLPDKAIDLIDEAASRLRLQQESKPEALDLIERE LIRLKIEAEAVKKDKDEVGKEKLENLYEQISQKQKEYDALEERWKKEKNLFQTIKQRTEE LDVLRHHLEQAMNSGDFAKAGEIQHSQIPNLLKQIEKDKHLASSKNFMVHDSVTSKDIAE VIARATGIPVAQLMTSEREKLIHMDAELKKTIMGQDAAIESITNVVRISRAGLHSHKRPL GSFLFLGPTGVGKTEVCKSLAKFLFDDESFICRIDMSEYMERHSVHRLIGAPPGYVGYEE GGELTESVRRRPYQIVLFDEFEKAHPSVSNILLQVLDEGHLTDSHGRRVDFKNTIIILTS NIGADVIARLPEGKPSISAMPAVMEQVRQRLAPEFINRLDDIIMFNRLSREDIRSIVEIL FAQVQKMLTEHNITLEESTEVYDWLSVNGYSAVYGARPLKRLVQSELLNQLALMLLDGRV REGEHVRLSVQDGHVVVVANHALSPEKGPTDERLLDQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/138 Sequence name : 138 Sequence length : 817 VALUES OF COMPUTED PARAMETERS Coef20 : 5.170 CoefTot : -1.511 ChDiff : -6 ZoneTo : 99 KR : 9 DE : 1 CleavSite : 90 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.565 1.400 0.341 0.527 MesoH : 0.008 0.301 -0.114 0.155 MuHd_075 : 36.863 22.992 9.532 8.028 MuHd_095 : 33.958 17.985 7.112 7.221 MuHd_100 : 33.534 21.154 8.734 8.818 MuHd_105 : 34.623 23.666 9.653 9.421 Hmax_075 : 14.000 17.733 4.864 5.460 Hmax_095 : 10.400 7.300 0.367 4.506 Hmax_100 : 15.200 17.100 4.369 5.310 Hmax_105 : 7.500 10.700 3.222 2.774 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0446 0.9554 DFMC : 0.0114 0.9886 This protein is probably imported in mitochondria. f(Ser) = 0.1010 f(Arg) = 0.0808 CMi = 0.55157 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 817 LmjF.02.0710 MLRRCLAQASTALRCGSTAALAAPFAPFGCGATRTAAVDAVACSRLASSTAAYPTLRTSCRWQSTGVTPWKSSGNSGGGG 80 NGGQQQGRTWVNPNAVPPGEFLKKYARDLTEEARTGRLDPIVGREEVIRRTIQVVSRRTKNNPVLIGEPGVGKTAIVEGL 160 AQRIVKGEVPESIKDRQVYALDMGTLVAGAKFRGEFEERLKGVLKDTIESHGKVILFIDELHTLVGAGSSGDGSMDAANL 240 LKPSLARGELHCIGATTLDEYRQHIEKDAALARRFQSVLVTEPTVEETISILRGIKEKYEAHHGCLIKDEALVYAAVNSH 320 RYLSERRLPDKAIDLIDEAASRLRLQQESKPEALDLIERELIRLKIEAEAVKKDKDEVGKEKLENLYEQISQKQKEYDAL 400 EERWKKEKNLFQTIKQRTEELDVLRHHLEQAMNSGDFAKAGEIQHSQIPNLLKQIEKDKHLASSKNFMVHDSVTSKDIAE 480 VIARATGIPVAQLMTSEREKLIHMDAELKKTIMGQDAAIESITNVVRISRAGLHSHKRPLGSFLFLGPTGVGKTEVCKSL 560 AKFLFDDESFICRIDMSEYMERHSVHRLIGAPPGYVGYEEGGELTESVRRRPYQIVLFDEFEKAHPSVSNILLQVLDEGH 640 LTDSHGRRVDFKNTIIILTSNIGADVIARLPEGKPSISAMPAVMEQVRQRLAPEFINRLDDIIMFNRLSREDIRSIVEIL 720 FAQVQKMLTEHNITLEESTEVYDWLSVNGYSAVYGARPLKRLVQSELLNQLALMLLDGRVREGEHVRLSVQDGHVVVVAN 800 HALSPEKGPTDERLLDQ 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ................. 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.02.0710 3 ----MLR|RC 0.075 . LmjF.02.0710 4 ---MLRR|CL 0.142 . LmjF.02.0710 14 QASTALR|CG 0.108 . LmjF.02.0710 34 FGCGATR|TA 0.082 . LmjF.02.0710 45 DAVACSR|LA 0.080 . LmjF.02.0710 57 AAYPTLR|TS 0.086 . LmjF.02.0710 61 TLRTSCR|WQ 0.152 . LmjF.02.0710 71 TGVTPWK|SS 0.112 . LmjF.02.0710 88 GGQQQGR|TW 0.083 . LmjF.02.0710 103 PPGEFLK|KY 0.064 . LmjF.02.0710 104 PGEFLKK|YA 0.129 . LmjF.02.0710 107 FLKKYAR|DL 0.138 . LmjF.02.0710 114 DLTEEAR|TG 0.068 . LmjF.02.0710 117 EEARTGR|LD 0.202 . LmjF.02.0710 124 LDPIVGR|EE 0.071 . LmjF.02.0710 129 GREEVIR|RT 0.110 . LmjF.02.0710 130 REEVIRR|TI 0.120 . LmjF.02.0710 137 TIQVVSR|RT 0.088 . LmjF.02.0710 138 IQVVSRR|TK 0.107 . LmjF.02.0710 140 VVSRRTK|NN 0.119 . LmjF.02.0710 153 GEPGVGK|TA 0.067 . LmjF.02.0710 163 VEGLAQR|IV 0.106 . LmjF.02.0710 166 LAQRIVK|GE 0.106 . LmjF.02.0710 174 EVPESIK|DR 0.058 . LmjF.02.0710 176 PESIKDR|QV 0.204 . LmjF.02.0710 191 TLVAGAK|FR 0.076 . LmjF.02.0710 193 VAGAKFR|GE 0.103 . LmjF.02.0710 199 RGEFEER|LK 0.092 . LmjF.02.0710 201 EFEERLK|GV 0.063 . LmjF.02.0710 205 RLKGVLK|DT 0.076 . LmjF.02.0710 213 TIESHGK|VI 0.062 . LmjF.02.0710 242 DAANLLK|PS 0.059 . LmjF.02.0710 247 LKPSLAR|GE 0.087 . LmjF.02.0710 262 TTLDEYR|QH 0.076 . LmjF.02.0710 267 YRQHIEK|DA 0.082 . LmjF.02.0710 273 KDAALAR|RF 0.106 . LmjF.02.0710 274 DAALARR|FQ 0.157 . LmjF.02.0710 293 ETISILR|GI 0.080 . LmjF.02.0710 296 SILRGIK|EK 0.100 . LmjF.02.0710 298 LRGIKEK|YE 0.077 . LmjF.02.0710 308 HHGCLIK|DE 0.067 . LmjF.02.0710 321 AAVNSHR|YL 0.101 . LmjF.02.0710 326 HRYLSER|RL 0.097 . LmjF.02.0710 327 RYLSERR|LP 0.112 . LmjF.02.0710 331 ERRLPDK|AI 0.079 . LmjF.02.0710 342 IDEAASR|LR 0.073 . LmjF.02.0710 344 EAASRLR|LQ 0.077 . LmjF.02.0710 350 RLQQESK|PE 0.058 . LmjF.02.0710 359 ALDLIER|EL 0.068 . LmjF.02.0710 363 IERELIR|LK 0.088 . LmjF.02.0710 365 RELIRLK|IE 0.054 . LmjF.02.0710 372 IEAEAVK|KD 0.060 . LmjF.02.0710 373 EAEAVKK|DK 0.141 . LmjF.02.0710 375 EAVKKDK|DE 0.078 . LmjF.02.0710 380 DKDEVGK|EK 0.061 . LmjF.02.0710 382 DEVGKEK|LE 0.061 . LmjF.02.0710 393 YEQISQK|QK 0.064 . LmjF.02.0710 395 QISQKQK|EY 0.083 . LmjF.02.0710 403 YDALEER|WK 0.074 . LmjF.02.0710 405 ALEERWK|KE 0.058 . LmjF.02.0710 406 LEERWKK|EK 0.199 . LmjF.02.0710 408 ERWKKEK|NL 0.083 . LmjF.02.0710 415 NLFQTIK|QR 0.069 . LmjF.02.0710 417 FQTIKQR|TE 0.073 . LmjF.02.0710 425 EELDVLR|HH 0.072 . LmjF.02.0710 439 NSGDFAK|AG 0.089 . LmjF.02.0710 453 QIPNLLK|QI 0.070 . LmjF.02.0710 457 LLKQIEK|DK 0.062 . LmjF.02.0710 459 KQIEKDK|HL 0.068 . LmjF.02.0710 465 KHLASSK|NF 0.059 . LmjF.02.0710 476 HDSVTSK|DI 0.095 . LmjF.02.0710 484 IAEVIAR|AT 0.121 . LmjF.02.0710 498 QLMTSER|EK 0.088 . LmjF.02.0710 500 MTSEREK|LI 0.067 . LmjF.02.0710 509 HMDAELK|KT 0.064 . LmjF.02.0710 510 MDAELKK|TI 0.130 . LmjF.02.0710 527 SITNVVR|IS 0.114 . LmjF.02.0710 530 NVVRISR|AG 0.144 . LmjF.02.0710 537 AGLHSHK|RP 0.054 . LmjF.02.0710 538 GLHSHKR|PL 0.287 . LmjF.02.0710 553 GPTGVGK|TE 0.056 . LmjF.02.0710 558 GKTEVCK|SL 0.084 . LmjF.02.0710 562 VCKSLAK|FL 0.071 . LmjF.02.0710 573 DESFICR|ID 0.085 . LmjF.02.0710 582 MSEYMER|HS 0.088 . LmjF.02.0710 587 ERHSVHR|LI 0.141 . LmjF.02.0710 609 ELTESVR|RR 0.066 . LmjF.02.0710 610 LTESVRR|RP 0.097 . LmjF.02.0710 611 TESVRRR|PY 0.304 . LmjF.02.0710 623 LFDEFEK|AH 0.056 . LmjF.02.0710 647 LTDSHGR|RV 0.112 . LmjF.02.0710 648 TDSHGRR|VD 0.184 . LmjF.02.0710 652 GRRVDFK|NT 0.098 . LmjF.02.0710 669 GADVIAR|LP 0.091 . LmjF.02.0710 674 ARLPEGK|PS 0.071 . LmjF.02.0710 688 AVMEQVR|QR 0.077 . LmjF.02.0710 690 MEQVRQR|LA 0.103 . LmjF.02.0710 698 APEFINR|LD 0.093 . LmjF.02.0710 707 DIIMFNR|LS 0.078 . LmjF.02.0710 710 MFNRLSR|ED 0.237 . LmjF.02.0710 714 LSREDIR|SI 0.164 . LmjF.02.0710 726 LFAQVQK|ML 0.072 . LmjF.02.0710 757 SAVYGAR|PL 0.093 . LmjF.02.0710 760 YGARPLK|RL 0.123 . LmjF.02.0710 761 GARPLKR|LV 0.290 . LmjF.02.0710 779 LMLLDGR|VR 0.064 . LmjF.02.0710 781 LLDGRVR|EG 0.083 . LmjF.02.0710 787 REGEHVR|LS 0.093 . LmjF.02.0710 807 HALSPEK|GP 0.062 . LmjF.02.0710 813 KGPTDER|LL 0.084 . ____________________________^_________________

  • Fasta :-

    >LmjF.02.0710 ATGCTGCGCAGGTGTCTCGCTCAGGCCTCCACGGCGCTTCGGTGTGGCAGCACCGCTGCG CTGGCGGCTCCCTTCGCCCCTTTCGGGTGCGGCGCCACCCGCACAGCTGCCGTGGATGCT GTGGCGTGCTCGCGGCTGGCATCGAGCACGGCGGCATACCCCACGTTACGGACGAGCTGC CGATGGCAGTCGACAGGCGTCACGCCGTGGAAGAGCAGCGGCAACAGCGGTGGAGGCGGC AACGGCGGCCAGCAGCAGGGACGCACGTGGGTGAACCCGAACGCTGTGCCACCGGGCGAG TTCCTAAAGAAGTACGCACGCGACTTGACCGAGGAGGCGCGCACGGGTCGCCTGGACCCC ATCGTGGGGCGCGAGGAGGTCATTCGACGCACCATCCAGGTCGTCTCGCGGCGTACCAAG AACAATCCGGTGCTGATTGGTGAGCCTGGCGTCGGTAAGACGGCCATCGTCGAAGGGCTG GCGCAGCGGATCGTGAAGGGCGAGGTGCCAGAGAGCATCAAGGACCGCCAGGTGTACGCG CTAGACATGGGCACCCTCGTCGCCGGCGCCAAGTTCCGCGGCGAGTTCGAGGAGCGCCTC AAGGGGGTGCTCAAGGACACCATAGAGTCGCACGGCAAGGTTATCTTGTTCATCGACGAG CTGCATACGTTGGTCGGCGCCGGCTCCTCCGGCGATGGGTCGATGGACGCGGCGAACCTG CTGAAGCCGTCACTAGCGCGCGGTGAGCTGCACTGCATCGGCGCCACCACCTTGGACGAG TACCGCCAGCACATCGAGAAGGACGCCGCGCTGGCGCGCCGCTTCCAGTCGGTGCTGGTT ACGGAGCCCACCGTGGAAGAGACCATCTCCATTCTGCGCGGCATCAAGGAAAAGTACGAG GCCCACCACGGCTGCCTCATCAAGGACGAGGCCCTCGTCTACGCCGCCGTCAACTCCCAC CGCTACCTCTCGGAGCGTCGCCTGCCAGACAAGGCCATCGACCTGATCGACGAGGCCGCT AGCCGCCTGCGCCTGCAGCAGGAGTCGAAGCCAGAGGCGCTCGACCTCATCGAGCGCGAG CTGATCCGCCTGAAGATCGAGGCGGAGGCGGTGAAGAAGGATAAGGACGAGGTGGGCAAG GAGAAGCTGGAGAACTTGTACGAGCAAATTTCGCAGAAGCAGAAGGAGTACGACGCACTC GAGGAGCGGTGGAAGAAGGAGAAGAACCTGTTCCAGACGATCAAGCAGCGCACCGAGGAA CTCGACGTGCTGCGGCACCATCTCGAGCAGGCGATGAACAGCGGCGACTTTGCCAAGGCG GGCGAGATACAGCACAGCCAAATCCCCAACCTGCTGAAGCAGATTGAGAAGGACAAGCAC CTCGCCAGCTCCAAGAACTTCATGGTGCACGACAGCGTCACCTCAAAGGACATTGCTGAG GTGATCGCCCGCGCGACCGGCATCCCGGTGGCGCAGCTCATGACGAGTGAGCGGGAGAAG CTCATTCACATGGATGCGGAGCTAAAGAAGACGATCATGGGCCAGGATGCGGCCATCGAG TCCATTACGAATGTGGTGCGCATCTCTCGCGCCGGCCTGCACTCGCACAAGCGCCCGCTC GGCTCCTTTCTGTTCCTTGGCCCCACCGGCGTCGGTAAGACGGAGGTGTGCAAGAGCCTC GCCAAGTTCCTCTTCGACGACGAGTCGTTCATCTGCCGCATCGACATGAGCGAGTACATG GAACGGCACTCGGTGCACCGGCTGATCGGCGCCCCACCAGGGTACGTCGGCTATGAGGAA GGCGGCGAGCTGACAGAGTCGGTGCGGCGTCGCCCTTACCAAATCGTCCTCTTCGACGAG TTCGAGAAGGCTCACCCGAGCGTGTCGAACATCCTGCTCCAAGTGCTGGACGAGGGGCAC CTGACCGATAGCCACGGCCGCCGCGTCGACTTCAAGAACACCATCATCATCCTGACCTCC AACATCGGTGCCGACGTCATCGCCCGCCTGCCGGAGGGGAAGCCGAGCATCAGTGCGATG CCGGCTGTCATGGAGCAGGTGCGACAGCGTCTGGCGCCCGAGTTCATTAACCGTCTCGAC GACATCATCATGTTTAACCGCCTCAGCCGCGAGGACATCCGCAGCATCGTGGAGATTTTG TTCGCACAGGTGCAGAAAATGCTGACGGAGCACAACATCACGTTGGAGGAGTCCACGGAG GTGTACGACTGGCTCAGCGTCAACGGCTACAGCGCTGTGTACGGTGCGCGGCCACTGAAG CGTCTCGTGCAGAGCGAACTGCTCAACCAACTGGCGCTGATGCTGCTTGATGGCCGCGTC CGCGAGGGTGAGCATGTGAGGCTGTCTGTGCAGGACGGTCATGTCGTGGTGGTTGCCAAT CACGCGCTCTCTCCTGAGAAGGGGCCGACTGACGAGCGACTGCTGGATCAGTGA
  • Download Fasta

  • Fasta :-

    MLRRCLAQASTALRCGSTAALAAPFAPFGCGATRTAAVDAVACSRLASSTAAYPTLRTSC RWQSTGVTPWKSSGNSGGGGNGGQQQGRTWVNPNAVPPGEFLKKYARDLTEEARTGRLDP IVGREEVIRRTIQVVSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGEVPESIKDRQVYA LDMGTLVAGAKFRGEFEERLKGVLKDTIESHGKVILFIDELHTLVGAGSSGDGSMDAANL LKPSLARGELHCIGATTLDEYRQHIEKDAALARRFQSVLVTEPTVEETISILRGIKEKYE AHHGCLIKDEALVYAAVNSHRYLSERRLPDKAIDLIDEAASRLRLQQESKPEALDLIERE LIRLKIEAEAVKKDKDEVGKEKLENLYEQISQKQKEYDALEERWKKEKNLFQTIKQRTEE LDVLRHHLEQAMNSGDFAKAGEIQHSQIPNLLKQIEKDKHLASSKNFMVHDSVTSKDIAE VIARATGIPVAQLMTSEREKLIHMDAELKKTIMGQDAAIESITNVVRISRAGLHSHKRPL GSFLFLGPTGVGKTEVCKSLAKFLFDDESFICRIDMSEYMERHSVHRLIGAPPGYVGYEE GGELTESVRRRPYQIVLFDEFEKAHPSVSNILLQVLDEGHLTDSHGRRVDFKNTIIILTS NIGADVIARLPEGKPSISAMPAVMEQVRQRLAPEFINRLDDIIMFNRLSREDIRSIVEIL FAQVQKMLTEHNITLEESTEVYDWLSVNGYSAVYGARPLKRLVQSELLNQLALMLLDGRV REGEHVRLSVQDGHVVVVANHALSPEKGPTDERLLDQ

  • title: ATP binding site
  • coordinates: E148,P149,G150,V151,G152,K153,T154,A155,D219,T257
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.02.0710324 SHRYLSERRL0.997unspLmjF.02.0710324 SHRYLSERRL0.997unspLmjF.02.0710324 SHRYLSERRL0.997unspLmjF.02.0710535 SAGLHSHKRP0.995unspLmjF.02.0710584 SMERHSVHRL0.995unspLmjF.02.0710709 SFNRLSREDI0.998unspLmjF.02.0710789 SHVRLSVQDG0.997unspLmjF.02.0710804 SNHALSPEKG0.997unspLmjF.02.071059 STLRTSCRWQ0.994unspLmjF.02.0710172 SEVPESIKDR0.997unsp

LmjF.02.0710      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India