LmjF.04.0850 | serine peptidase, Clan S-, family S54, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.04.0850OTHER0.7305950.0044220.264983
No Results

  • Fasta :-

    >LmjF.04.0850 MQQPCFFAARCGAQRISRLATAAAATVSSSPAIMRCAMSSSSSSSTSSNGLLTVHASATA MHALHSGSLPVSSTLTQRNLSALATSLTALRTMRGAATIVVPARASFFAGAAVSPMATAC SSLFAAQRCYGVARATRVALSPKKSNEGSGQLQGVNNLERYKGEEEDEQKNGGGNEQENP FNMNSGPGYLPFPPPFHTINIVMILFLANVMCYLIMNLGNDDWRDFVVEHCTLSHENWTR IYPLFTNAFYQENILQLLIDCWLLWQFGDTMLGFLGNTRMTFFALLCTLGGSVIHVARQK FELYYGMDELEVRGRCYGPNPFIMGLVAIEGLIFRHLNFIQQPPIPFLVLTAFVMVIDVW RIFTTKPEEHGAATGGALMAYLFWALPTRMLGLDKLTATL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/492 Sequence name : 492 Sequence length : 400 VALUES OF COMPUTED PARAMETERS Coef20 : 4.607 CoefTot : 4.937 ChDiff : 2 ZoneTo : 146 KR : 13 DE : 0 CleavSite : 96 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.947 2.376 0.330 0.776 MesoH : 0.624 0.870 -0.066 0.433 MuHd_075 : 30.416 16.882 7.117 6.181 MuHd_095 : 39.362 22.622 11.013 9.264 MuHd_100 : 33.282 22.750 9.982 8.578 MuHd_105 : 36.427 20.616 9.800 8.001 Hmax_075 : 9.217 9.000 3.429 4.317 Hmax_095 : 13.037 17.500 3.643 5.940 Hmax_100 : 14.600 15.800 4.361 5.940 Hmax_105 : 15.200 17.200 0.605 5.833 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0074 0.9926 DFMC : 0.0001 0.9999 This protein is probably imported in chloroplast. f(Ser) = 0.1781 f(Arg) = 0.0753 CMi = 1.01483 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 400 LmjF.04.0850 MQQPCFFAARCGAQRISRLATAAAATVSSSPAIMRCAMSSSSSSSTSSNGLLTVHASATAMHALHSGSLPVSSTLTQRNL 80 SALATSLTALRTMRGAATIVVPARASFFAGAAVSPMATACSSLFAAQRCYGVARATRVALSPKKSNEGSGQLQGVNNLER 160 YKGEEEDEQKNGGGNEQENPFNMNSGPGYLPFPPPFHTINIVMILFLANVMCYLIMNLGNDDWRDFVVEHCTLSHENWTR 240 IYPLFTNAFYQENILQLLIDCWLLWQFGDTMLGFLGNTRMTFFALLCTLGGSVIHVARQKFELYYGMDELEVRGRCYGPN 320 PFIMGLVAIEGLIFRHLNFIQQPPIPFLVLTAFVMVIDVWRIFTTKPEEHGAATGGALMAYLFWALPTRMLGLDKLTATL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.04.0850 10 PCFFAAR|CG 0.084 . LmjF.04.0850 15 ARCGAQR|IS 0.085 . LmjF.04.0850 18 GAQRISR|LA 0.353 . LmjF.04.0850 35 SSPAIMR|CA 0.107 . LmjF.04.0850 78 SSTLTQR|NL 0.100 . LmjF.04.0850 91 TSLTALR|TM 0.074 . LmjF.04.0850 94 TALRTMR|GA 0.310 . LmjF.04.0850 104 TIVVPAR|AS 0.122 . LmjF.04.0850 128 SLFAAQR|CY 0.117 . LmjF.04.0850 134 RCYGVAR|AT 0.125 . LmjF.04.0850 137 GVARATR|VA 0.185 . LmjF.04.0850 143 RVALSPK|KS 0.070 . LmjF.04.0850 144 VALSPKK|SN 0.140 . LmjF.04.0850 160 GVNNLER|YK 0.153 . LmjF.04.0850 162 NNLERYK|GE 0.062 . LmjF.04.0850 170 EEEDEQK|NG 0.064 . LmjF.04.0850 224 LGNDDWR|DF 0.105 . LmjF.04.0850 240 SHENWTR|IY 0.085 . LmjF.04.0850 279 GFLGNTR|MT 0.083 . LmjF.04.0850 298 SVIHVAR|QK 0.102 . LmjF.04.0850 300 IHVARQK|FE 0.065 . LmjF.04.0850 313 MDELEVR|GR 0.085 . LmjF.04.0850 315 ELEVRGR|CY 0.123 . LmjF.04.0850 335 IEGLIFR|HL 0.084 . LmjF.04.0850 361 MVIDVWR|IF 0.095 . LmjF.04.0850 366 WRIFTTK|PE 0.075 . LmjF.04.0850 389 FWALPTR|ML 0.093 . LmjF.04.0850 395 RMLGLDK|LT 0.058 . ____________________________^_________________

  • Fasta :-

    >LmjF.04.0850 ATGCAGCAGCCATGCTTCTTTGCCGCGCGCTGTGGCGCACAGCGGATTTCGCGGCTGGCG ACAGCAGCGGCAGCAACAGTGTCGTCATCGCCCGCGATAATGCGCTGCGCCATGAGCAGC AGCAGCAGCAGCAGCACTAGCAGCAACGGCCTGCTCACGGTGCACGCCTCAGCAACCGCC ATGCACGCCCTCCATTCGGGGTCGCTGCCTGTGTCGTCGACGCTGACGCAGCGGAACCTG TCGGCGCTTGCGACAAGCCTGACCGCCCTTCGCACGATGCGCGGCGCCGCTACCATTGTA GTTCCGGCGCGCGCCTCGTTCTTCGCGGGAGCCGCGGTCTCGCCAATGGCGACAGCGTGC TCGTCGCTCTTCGCTGCGCAGCGCTGCTACGGCGTCGCCAGAGCCACCCGCGTTGCGCTC TCCCCAAAGAAGAGCAACGAAGGCAGCGGCCAGCTGCAGGGCGTCAACAACCTCGAACGC TACAAGGGAGAGGAAGAGGACGAGCAGAAGAATGGCGGTGGCAACGAGCAGGAGAACCCG TTCAACATGAACTCCGGTCCAGGCTACCTGCCCTTCCCCCCGCCCTTCCACACCATCAAC ATCGTCATGATCCTCTTCCTCGCCAACGTGATGTGCTACCTGATCATGAACCTCGGCAAT GACGACTGGCGTGACTTCGTGGTGGAGCACTGCACTCTTTCACACGAGAACTGGACACGC ATCTACCCCCTCTTCACGAACGCCTTCTATCAAGAGAACATCCTCCAGCTGCTCATCGAC TGCTGGCTGCTCTGGCAGTTCGGCGACACGATGCTGGGCTTCCTGGGCAACACGCGCATG ACCTTTTTCGCGCTGCTGTGCACGCTCGGGGGCAGCGTCATCCATGTGGCGCGGCAGAAA TTCGAGCTGTACTACGGAATGGACGAGCTGGAGGTGCGTGGCCGCTGCTACGGACCAAAC CCGTTCATCATGGGTCTCGTGGCGATCGAGGGGCTCATCTTCCGTCACCTGAACTTCATT CAGCAGCCGCCGATCCCCTTCCTCGTGCTGACGGCGTTCGTTATGGTGATCGACGTTTGG CGCATCTTCACGACGAAGCCGGAGGAGCACGGCGCGGCCACCGGCGGTGCCCTCATGGCG TACCTCTTCTGGGCCCTGCCGACTCGCATGCTGGGTCTCGACAAGCTCACTGCCACGCTC TAG
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  • Fasta :-

    MQQPCFFAARCGAQRISRLATAAAATVSSSPAIMRCAMSSSSSSSTSSNGLLTVHASATA MHALHSGSLPVSSTLTQRNLSALATSLTALRTMRGAATIVVPARASFFAGAAVSPMATAC SSLFAAQRCYGVARATRVALSPKKSNEGSGQLQGVNNLERYKGEEEDEQKNGGGNEQENP FNMNSGPGYLPFPPPFHTINIVMILFLANVMCYLIMNLGNDDWRDFVVEHCTLSHENWTR IYPLFTNAFYQENILQLLIDCWLLWQFGDTMLGFLGNTRMTFFALLCTLGGSVIHVARQK FELYYGMDELEVRGRCYGPNPFIMGLVAIEGLIFRHLNFIQQPPIPFLVLTAFVMVIDVW RIFTTKPEEHGAATGGALMAYLFWALPTRMLGLDKLTATL

    No Results
No Results
No Results
IDSitePeptideScoreMethod
LmjF.04.0850141 SRVALSPKKS0.997unsp

LmjF.04.0850      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India