LmjF.07.0270 | acetylornithine deacetylase-like protein

_IDPredictionOTHERSPmTPCS_Position
LmjF.07.0270OTHER0.9854420.0048680.009690
No Results

  • Fasta :-

    >LmjF.07.0270 MASLQHVRDMLAKLVSFETVSARTNLPLIEYVQGYLAGCGVKHVTVMRSADGIHANLLAT LPSAGGSVEGGLLLSGHTDVVPVDGQKWTSDPFVLTERDGNLYGRGSCDMKAFIAVCLAL VPEWVCAPPRKPVQIALTYDEETTFDGVRQLMRERGSDLKKCEGCIIGEPTMLDLVIAHK GIFYSYITFKGKAAHSSLQTAGYNSIEPAMHVFQKLFEMRDRFAREGPFEEGFNITHTTL CPTLTTGGNAINTIPAECSLGFEFRNVPSHAASVIKKEIWDFVGAETERVKLACPEGGME VVKCGEVEPFGGNKDASVVKALLAANPELPKVTKVSFCTEAGEYQAAGINSVVCGPGNIE QAHKANEFVSLEQLDKGLLVVRRVVQLMCGGSEASQL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/366 Sequence name : 366 Sequence length : 397 VALUES OF COMPUTED PARAMETERS Coef20 : 4.365 CoefTot : 0.116 ChDiff : -9 ZoneTo : 8 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.406 1.888 0.310 0.675 MesoH : -0.102 0.517 -0.238 0.280 MuHd_075 : 36.240 15.101 7.459 5.908 MuHd_095 : 19.238 17.993 7.381 4.927 MuHd_100 : 19.144 19.214 6.343 5.229 MuHd_105 : 23.133 20.696 6.270 5.586 Hmax_075 : 13.500 12.800 2.067 4.280 Hmax_095 : 6.600 15.500 0.750 4.580 Hmax_100 : 7.700 15.500 0.750 4.580 Hmax_105 : 18.700 19.500 3.034 6.060 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7777 0.2223 DFMC : 0.8886 0.1114
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 397 LmjF.07.0270 MASLQHVRDMLAKLVSFETVSARTNLPLIEYVQGYLAGCGVKHVTVMRSADGIHANLLATLPSAGGSVEGGLLLSGHTDV 80 VPVDGQKWTSDPFVLTERDGNLYGRGSCDMKAFIAVCLALVPEWVCAPPRKPVQIALTYDEETTFDGVRQLMRERGSDLK 160 KCEGCIIGEPTMLDLVIAHKGIFYSYITFKGKAAHSSLQTAGYNSIEPAMHVFQKLFEMRDRFAREGPFEEGFNITHTTL 240 CPTLTTGGNAINTIPAECSLGFEFRNVPSHAASVIKKEIWDFVGAETERVKLACPEGGMEVVKCGEVEPFGGNKDASVVK 320 ALLAANPELPKVTKVSFCTEAGEYQAAGINSVVCGPGNIEQAHKANEFVSLEQLDKGLLVVRRVVQLMCGGSEASQL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.07.0270 8 ASLQHVR|DM 0.114 . LmjF.07.0270 13 VRDMLAK|LV 0.088 . LmjF.07.0270 23 FETVSAR|TN 0.083 . LmjF.07.0270 42 LAGCGVK|HV 0.077 . LmjF.07.0270 48 KHVTVMR|SA 0.225 . LmjF.07.0270 87 VPVDGQK|WT 0.064 . LmjF.07.0270 98 PFVLTER|DG 0.081 . LmjF.07.0270 105 DGNLYGR|GS 0.100 . LmjF.07.0270 111 RGSCDMK|AF 0.074 . LmjF.07.0270 130 WVCAPPR|KP 0.081 . LmjF.07.0270 131 VCAPPRK|PV 0.132 . LmjF.07.0270 149 TTFDGVR|QL 0.089 . LmjF.07.0270 153 GVRQLMR|ER 0.091 . LmjF.07.0270 155 RQLMRER|GS 0.079 . LmjF.07.0270 160 ERGSDLK|KC 0.066 . LmjF.07.0270 161 RGSDLKK|CE 0.170 . LmjF.07.0270 180 DLVIAHK|GI 0.068 . LmjF.07.0270 190 YSYITFK|GK 0.066 . LmjF.07.0270 192 YITFKGK|AA 0.085 . LmjF.07.0270 215 AMHVFQK|LF 0.071 . LmjF.07.0270 220 QKLFEMR|DR 0.119 . LmjF.07.0270 222 LFEMRDR|FA 0.137 . LmjF.07.0270 225 MRDRFAR|EG 0.304 . LmjF.07.0270 265 SLGFEFR|NV 0.134 . LmjF.07.0270 276 HAASVIK|KE 0.068 . LmjF.07.0270 277 AASVIKK|EI 0.170 . LmjF.07.0270 289 VGAETER|VK 0.073 . LmjF.07.0270 291 AETERVK|LA 0.071 . LmjF.07.0270 303 GGMEVVK|CG 0.075 . LmjF.07.0270 314 EPFGGNK|DA 0.085 . LmjF.07.0270 320 KDASVVK|AL 0.073 . LmjF.07.0270 331 ANPELPK|VT 0.060 . LmjF.07.0270 334 ELPKVTK|VS 0.064 . LmjF.07.0270 364 NIEQAHK|AN 0.063 . LmjF.07.0270 376 SLEQLDK|GL 0.068 . LmjF.07.0270 382 KGLLVVR|RV 0.089 . LmjF.07.0270 383 GLLVVRR|VV 0.150 . ____________________________^_________________

  • Fasta :-

    >LmjF.07.0270 ATGGCCTCCCTCCAACATGTGCGTGATATGCTGGCGAAGCTGGTTAGCTTTGAAACTGTG AGTGCGCGCACGAACCTGCCGCTGATCGAGTACGTGCAGGGGTACCTTGCAGGGTGCGGT GTGAAGCACGTGACGGTGATGCGGTCGGCGGACGGGATCCACGCAAACCTGTTGGCGACG CTGCCAAGCGCGGGCGGCAGCGTGGAAGGCGGGCTGCTCCTGAGCGGGCACACCGATGTT GTGCCAGTGGACGGGCAGAAGTGGACAAGTGACCCGTTCGTGCTGACGGAGCGCGACGGC AACCTTTACGGGCGCGGGTCGTGCGACATGAAGGCGTTCATTGCCGTGTGCCTTGCCCTT GTGCCGGAGTGGGTGTGCGCCCCGCCGCGGAAGCCCGTACAAATTGCGCTGACGTACGAC GAGGAGACGACGTTCGACGGCGTACGGCAGCTGATGCGCGAGCGGGGAAGCGATCTGAAG AAGTGCGAGGGCTGCATCATCGGCGAGCCGACTATGCTCGACCTCGTGATTGCGCACAAG GGCATCTTCTACAGCTACATCACGTTCAAAGGCAAGGCTGCGCACTCTTCGCTGCAGACC GCTGGGTACAACTCCATCGAGCCTGCGATGCACGTGTTTCAGAAGCTTTTCGAGATGCGT GATCGCTTCGCCCGCGAGGGCCCCTTCGAGGAGGGCTTCAACATCACCCACACGACCCTC TGCCCGACTCTCACGACCGGCGGCAATGCAATAAACACGATCCCTGCAGAGTGCTCGCTG GGCTTCGAGTTCCGCAACGTGCCGTCTCACGCTGCATCTGTGATTAAGAAGGAGATCTGG GACTTTGTCGGCGCGGAGACGGAGCGCGTGAAGCTGGCGTGCCCGGAGGGGGGCATGGAG GTGGTGAAGTGCGGCGAAGTCGAGCCCTTTGGCGGCAACAAGGATGCGTCAGTCGTGAAG GCCCTCCTGGCTGCCAACCCTGAGCTGCCGAAGGTGACGAAGGTATCGTTCTGCACAGAG GCGGGCGAGTACCAGGCCGCTGGCATCAACTCCGTTGTGTGCGGCCCCGGCAACATTGAG CAGGCACACAAGGCAAACGAGTTCGTGTCGCTGGAGCAGCTGGACAAGGGCCTGTTGGTG GTTCGCCGCGTTGTGCAGCTGATGTGCGGCGGGAGTGAGGCGAGCCAGCTGTGA
  • Download Fasta

  • Fasta :-

    MASLQHVRDMLAKLVSFETVSARTNLPLIEYVQGYLAGCGVKHVTVMRSADGIHANLLAT LPSAGGSVEGGLLLSGHTDVVPVDGQKWTSDPFVLTERDGNLYGRGSCDMKAFIAVCLAL VPEWVCAPPRKPVQIALTYDEETTFDGVRQLMRERGSDLKKCEGCIIGEPTMLDLVIAHK GIFYSYITFKGKAAHSSLQTAGYNSIEPAMHVFQKLFEMRDRFAREGPFEEGFNITHTTL CPTLTTGGNAINTIPAECSLGFEFRNVPSHAASVIKKEIWDFVGAETERVKLACPEGGME VVKCGEVEPFGGNKDASVVKALLAANPELPKVTKVSFCTEAGEYQAAGINSVVCGPGNIE QAHKANEFVSLEQLDKGLLVVRRVVQLMCGGSEASQL

  • title: metal binding site
  • coordinates: H77,D109,E141,E142,E169,H363
No Results
No Results
No Results

LmjF.07.0270      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India