LmjF.07.0370 | Zinc finger, C3HC4 type (RING finger), putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0046872      GO:0005515      GO:0008270      

  • Computed_GO_Functions:  metal ion binding      protein binding      zinc ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.07.0370OTHER0.9999940.0000060.000000
No Results

  • Fasta :-

    >LmjF.07.0370 MRDSCRARTPSPSHLVPRDCEGASSNTCGSGGGDPTVRPNSTTARPRQRPRHHQQGPRRG CHFTDTPESSGKSSSSSRGSVGGCVVSTWMNAPPNVVGGVERMANNSHQSSPSSCAAAAV NRPPGTSTSPTTQHKQREAAARPTSRAAPTLLAAAVAFGPSACMVASGVAVSGTQRSDHN PTDTAARVAQMPVPGASSAAATPQHDCPLRDSSGYPRGSSPTSLRLHATASTAAGTATCG NLADAQRRRRLKPPPIMSDIASASGRRSCSCPSTRSATAIEATIASSPLATYTVVAASPR AAAAVTHPARTLRSAGSLSSPSNMLPQGPVSPPNPDFKPLGLWGTSPASAAASTSATTLE LEASRATASGADVGSLLTHEMDGGVVIVDPHQAPDDLVCGVCMSVCRQPTAAACGHLFCR RCLQSWMQENRAATCPLDRTPIRVELLHTDARAQRQINALQCRCPASLSRASQWALRQLG SASHVLGDRTGEDEADKDDARGDGRAQLEHPRCTWAGCVSDAAAHLRQCPYIIIECPFAK HGCSAEMPRADMAGHVKNGVADHLLLVSQALDASTEQCRVLQGEVEVLRQRCPMRYPVAL PDVPTGGPAGISEPAVSMYSLSLHGADVPTAALAPALVIAGGGSSRGATPIAITAFPEEV SPESGSPTRVVGPFGRGASAAVDYPFPVFSQSQPPYPHPHHGSSTIATQANVRRRAATDD MLLVAAHRVPSGHDATMPMPADTTALRTSSPLHFGAPPASVSVANTAAAAPTFALPAGAA ALIPAQAASALPRAAPVVGSGHCVDRFVWVITDMASRQAPCYSRSFTSHGLPWYVGMDTT ASWEQCGVYLFTEGHEHRVDFRVILYHEDPARDVVHVVRDWQEDYIGKGWGPLRFINRFT LEQDGFLVSGCLRVGIEVVSGPY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/559 Sequence name : 559 Sequence length : 923 VALUES OF COMPUTED PARAMETERS Coef20 : 4.217 CoefTot : -0.097 ChDiff : 8 ZoneTo : 18 KR : 4 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.888 1.794 0.366 0.650 MesoH : 0.554 0.710 -0.079 0.352 MuHd_075 : 30.726 18.124 7.809 5.816 MuHd_095 : 34.389 19.300 9.783 6.248 MuHd_100 : 21.281 15.933 7.312 3.372 MuHd_105 : 5.078 7.069 2.548 1.210 Hmax_075 : 7.233 3.150 -0.184 1.983 Hmax_095 : -1.100 5.500 -0.033 0.570 Hmax_100 : -0.500 5.600 0.003 0.700 Hmax_105 : -4.550 4.317 -0.155 0.070 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8140 0.1860 DFMC : 0.8314 0.1686
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 923 LmjF.07.0370 MRDSCRARTPSPSHLVPRDCEGASSNTCGSGGGDPTVRPNSTTARPRQRPRHHQQGPRRGCHFTDTPESSGKSSSSSRGS 80 VGGCVVSTWMNAPPNVVGGVERMANNSHQSSPSSCAAAAVNRPPGTSTSPTTQHKQREAAARPTSRAAPTLLAAAVAFGP 160 SACMVASGVAVSGTQRSDHNPTDTAARVAQMPVPGASSAAATPQHDCPLRDSSGYPRGSSPTSLRLHATASTAAGTATCG 240 NLADAQRRRRLKPPPIMSDIASASGRRSCSCPSTRSATAIEATIASSPLATYTVVAASPRAAAAVTHPARTLRSAGSLSS 320 PSNMLPQGPVSPPNPDFKPLGLWGTSPASAAASTSATTLELEASRATASGADVGSLLTHEMDGGVVIVDPHQAPDDLVCG 400 VCMSVCRQPTAAACGHLFCRRCLQSWMQENRAATCPLDRTPIRVELLHTDARAQRQINALQCRCPASLSRASQWALRQLG 480 SASHVLGDRTGEDEADKDDARGDGRAQLEHPRCTWAGCVSDAAAHLRQCPYIIIECPFAKHGCSAEMPRADMAGHVKNGV 560 ADHLLLVSQALDASTEQCRVLQGEVEVLRQRCPMRYPVALPDVPTGGPAGISEPAVSMYSLSLHGADVPTAALAPALVIA 640 GGGSSRGATPIAITAFPEEVSPESGSPTRVVGPFGRGASAAVDYPFPVFSQSQPPYPHPHHGSSTIATQANVRRRAATDD 720 MLLVAAHRVPSGHDATMPMPADTTALRTSSPLHFGAPPASVSVANTAAAAPTFALPAGAAALIPAQAASALPRAAPVVGS 800 GHCVDRFVWVITDMASRQAPCYSRSFTSHGLPWYVGMDTTASWEQCGVYLFTEGHEHRVDFRVILYHEDPARDVVHVVRD 880 WQEDYIGKGWGPLRFINRFTLEQDGFLVSGCLRVGIEVVSGPY 960 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................................................P....... 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ................................................................................ 880 ........................................... 960 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmjF.07.0370 2 -----MR|DS 0.132 . LmjF.07.0370 6 -MRDSCR|AR 0.101 . LmjF.07.0370 8 RDSCRAR|TP 0.132 . LmjF.07.0370 18 PSHLVPR|DC 0.180 . LmjF.07.0370 38 GGDPTVR|PN 0.082 . LmjF.07.0370 45 PNSTTAR|PR 0.106 . LmjF.07.0370 47 STTARPR|QR 0.084 . LmjF.07.0370 49 TARPRQR|PR 0.115 . LmjF.07.0370 51 RPRQRPR|HH 0.148 . LmjF.07.0370 58 HHQQGPR|RG 0.083 . LmjF.07.0370 59 HQQGPRR|GC 0.148 . LmjF.07.0370 72 TPESSGK|SS 0.123 . LmjF.07.0370 78 KSSSSSR|GS 0.138 . LmjF.07.0370 102 VVGGVER|MA 0.117 . LmjF.07.0370 122 AAAAVNR|PP 0.109 . LmjF.07.0370 135 SPTTQHK|QR 0.070 . LmjF.07.0370 137 TTQHKQR|EA 0.152 . LmjF.07.0370 142 QREAAAR|PT 0.204 . LmjF.07.0370 146 AARPTSR|AA 0.118 . LmjF.07.0370 176 AVSGTQR|SD 0.129 . LmjF.07.0370 187 PTDTAAR|VA 0.084 . LmjF.07.0370 210 QHDCPLR|DS 0.131 . LmjF.07.0370 217 DSSGYPR|GS 0.111 . LmjF.07.0370 225 SSPTSLR|LH 0.077 . LmjF.07.0370 247 NLADAQR|RR 0.071 . LmjF.07.0370 248 LADAQRR|RR 0.099 . LmjF.07.0370 249 ADAQRRR|RL 0.137 . LmjF.07.0370 250 DAQRRRR|LK 0.296 . LmjF.07.0370 252 QRRRRLK|PP 0.119 . LmjF.07.0370 266 IASASGR|RS 0.112 . LmjF.07.0370 267 ASASGRR|SC 0.159 . LmjF.07.0370 275 CSCPSTR|SA 0.293 . LmjF.07.0370 300 VVAASPR|AA 0.135 . LmjF.07.0370 310 AVTHPAR|TL 0.093 . LmjF.07.0370 313 HPARTLR|SA 0.581 *ProP* LmjF.07.0370 338 PPNPDFK|PL 0.085 . LmjF.07.0370 365 LELEASR|AT 0.084 . LmjF.07.0370 407 VCMSVCR|QP 0.093 . LmjF.07.0370 420 CGHLFCR|RC 0.091 . LmjF.07.0370 421 GHLFCRR|CL 0.107 . LmjF.07.0370 431 SWMQENR|AA 0.112 . LmjF.07.0370 439 ATCPLDR|TP 0.079 . LmjF.07.0370 443 LDRTPIR|VE 0.074 . LmjF.07.0370 452 LLHTDAR|AQ 0.104 . LmjF.07.0370 455 TDARAQR|QI 0.335 . LmjF.07.0370 463 INALQCR|CP 0.082 . LmjF.07.0370 470 CPASLSR|AS 0.109 . LmjF.07.0370 477 ASQWALR|QL 0.109 . LmjF.07.0370 489 SHVLGDR|TG 0.074 . LmjF.07.0370 497 GEDEADK|DD 0.063 . LmjF.07.0370 501 ADKDDAR|GD 0.116 . LmjF.07.0370 505 DARGDGR|AQ 0.080 . LmjF.07.0370 512 AQLEHPR|CT 0.097 . LmjF.07.0370 527 DAAAHLR|QC 0.094 . LmjF.07.0370 540 IECPFAK|HG 0.073 . LmjF.07.0370 549 CSAEMPR|AD 0.113 . LmjF.07.0370 557 DMAGHVK|NG 0.056 . LmjF.07.0370 579 ASTEQCR|VL 0.085 . LmjF.07.0370 589 GEVEVLR|QR 0.078 . LmjF.07.0370 591 VEVLRQR|CP 0.069 . LmjF.07.0370 595 RQRCPMR|YP 0.103 . LmjF.07.0370 646 AGGGSSR|GA 0.126 . LmjF.07.0370 669 ESGSPTR|VV 0.156 . LmjF.07.0370 676 VVGPFGR|GA 0.169 . LmjF.07.0370 713 ATQANVR|RR 0.072 . LmjF.07.0370 714 TQANVRR|RA 0.162 . LmjF.07.0370 715 QANVRRR|AA 0.247 . LmjF.07.0370 728 LLVAAHR|VP 0.086 . LmjF.07.0370 747 ADTTALR|TS 0.082 . LmjF.07.0370 793 AASALPR|AA 0.158 . LmjF.07.0370 806 SGHCVDR|FV 0.228 . LmjF.07.0370 817 ITDMASR|QA 0.079 . LmjF.07.0370 824 QAPCYSR|SF 0.099 . LmjF.07.0370 858 TEGHEHR|VD 0.095 . LmjF.07.0370 862 EHRVDFR|VI 0.090 . LmjF.07.0370 872 YHEDPAR|DV 0.173 . LmjF.07.0370 879 DVVHVVR|DW 0.098 . LmjF.07.0370 888 QEDYIGK|GW 0.072 . LmjF.07.0370 894 KGWGPLR|FI 0.091 . LmjF.07.0370 898 PLRFINR|FT 0.111 . LmjF.07.0370 913 LVSGCLR|VG 0.082 . ____________________________^_________________

  • Fasta :-

    >LmjF.07.0370 ATGCGAGACTCGTGTCGAGCGCGCACGCCGTCTCCGTCGCACCTCGTACCGCGGGACTGC GAAGGTGCCTCCAGTAACACCTGTGGCAGCGGTGGCGGTGACCCCACTGTGCGACCGAAC TCGACTACAGCGCGTCCGCGACAACGTCCGCGCCACCACCAGCAGGGCCCTCGCAGGGGG TGCCACTTCACAGACACACCGGAGAGTAGCGGCAAGAGCAGCAGCTCGAGCCGTGGCAGC GTCGGCGGCTGCGTCGTGTCGACGTGGATGAATGCGCCTCCGAATGTGGTGGGCGGTGTT GAGAGGATGGCGAACAACTCACACCAGAGCTCGCCGTCGTCGTGTGCGGCCGCGGCGGTG AATCGCCCGCCTGGGACCTCCACATCTCCGACCACGCAGCACAAGCAGCGGGAGGCGGCT GCGCGTCCGACGAGTAGAGCTGCCCCGACCTTGCTGGCCGCGGCCGTCGCGTTCGGCCCA TCGGCGTGCATGGTGGCAAGCGGTGTCGCTGTTTCAGGAACGCAACGTAGCGACCACAAT CCCACTGACACTGCAGCAAGGGTAGCGCAGATGCCAGTGCCGGGCGCATCCAGCGCGGCT GCAACACCGCAACACGACTGCCCATTGCGTGATTCGTCGGGGTATCCTCGGGGGTCATCC CCAACCTCCCTTCGCCTTCACGCGACTGCCTCAACAGCTGCCGGCACCGCCACCTGCGGC AACCTCGCTGATGCGCAGCGCCGCCGCAGGCTCAAGCCACCGCCAATCATGAGCGACATT GCCAGTGCCTCGGGTCGTCGCTCGTGCTCGTGCCCCAGCACTCGCAGTGCCACGGCGATA GAGGCCACCATCGCGTCCTCTCCACTTGCGACCTACACGGTTGTGGCAGCAAGCCCGAGA GCGGCAGCGGCAGTGACGCACCCGGCTCGCACACTTCGAAGCGCCGGCAGCCTGTCGAGC CCAAGCAATATGCTACCACAGGGGCCCGTGTCGCCCCCTAACCCCGACTTCAAGCCTCTT GGGCTGTGGGGCACCTCACCTGCCTCCGCCGCCGCTTCAACTTCAGCGACCACTCTAGAG CTGGAGGCGTCAAGGGCAACAGCGAGCGGCGCAGATGTCGGCAGCCTCCTCACGCACGAG ATGGACGGCGGTGTGGTCATCGTAGACCCTCACCAGGCACCGGACGATCTCGTCTGCGGT GTGTGTATGTCTGTGTGCCGGCAACCGACAGCAGCGGCGTGCGGGCATCTTTTCTGCCGT CGCTGCCTTCAATCGTGGATGCAGGAAAACCGGGCTGCAACATGCCCGCTGGACCGAACC CCGATCCGGGTGGAGCTGCTGCACACCGACGCCCGCGCGCAGCGGCAGATCAACGCGCTG CAATGCCGCTGCCCCGCCTCGCTCTCTCGGGCATCGCAGTGGGCGTTGCGGCAACTCGGG TCGGCGAGTCATGTGCTAGGCGACAGGACAGGGGAGGACGAGGCGGACAAGGATGACGCG AGGGGCGATGGACGCGCACAACTTGAGCATCCGCGATGTACGTGGGCTGGATGCGTGTCG GACGCTGCAGCACATTTGCGGCAGTGCCCGTACATCATAATCGAGTGCCCGTTTGCCAAG CACGGCTGCTCGGCGGAGATGCCACGGGCAGATATGGCGGGACACGTGAAAAATGGCGTG GCGGACCACCTGCTGCTTGTCTCGCAGGCCCTCGACGCGTCCACGGAGCAGTGCCGGGTC TTGCAGGGGGAGGTGGAGGTGCTGCGGCAACGCTGCCCCATGCGTTATCCCGTCGCCCTC CCCGATGTGCCCACAGGCGGGCCAGCCGGAATTTCGGAGCCGGCGGTGTCGATGTACTCG TTATCTTTGCATGGAGCGGATGTGCCCACAGCGGCGCTGGCACCGGCTCTCGTCATCGCC GGCGGCGGCAGCAGCCGCGGTGCAACTCCCATCGCGATAACGGCGTTCCCAGAGGAAGTA TCGCCGGAGAGCGGCTCCCCGACTCGAGTGGTGGGGCCGTTTGGCCGCGGCGCATCCGCC GCCGTCGACTACCCGTTCCCTGTCTTCTCGCAGTCGCAGCCGCCGTATCCACATCCGCAC CACGGTTCATCGACGATAGCCACGCAGGCCAACGTGCGTCGGCGCGCAGCTACCGACGAT ATGTTGCTTGTCGCCGCCCACCGCGTGCCCAGCGGACACGATGCCACAATGCCGATGCCG GCGGACACGACGGCGCTGCGCACTTCATCTCCGCTGCATTTTGGCGCACCACCGGCCTCC GTGTCCGTCGCCAACACGGCAGCGGCAGCGCCGACCTTCGCCCTTCCTGCCGGCGCAGCA GCGCTCATCCCTGCCCAAGCTGCTAGCGCTCTTCCGCGTGCGGCGCCGGTGGTGGGTAGC GGCCACTGCGTGGATCGGTTTGTTTGGGTCATCACCGACATGGCGTCGCGACAGGCGCCG TGCTACAGCCGCTCCTTTACCTCGCACGGCCTGCCATGGTATGTGGGCATGGACACCACC GCCTCATGGGAGCAGTGTGGAGTATACCTCTTCACCGAGGGTCACGAGCACCGTGTGGAC TTCCGCGTGATCCTGTACCACGAGGACCCGGCACGTGACGTTGTGCACGTCGTGCGGGAC TGGCAGGAGGACTACATTGGAAAAGGCTGGGGCCCACTGCGCTTCATCAACCGTTTCACG CTAGAGCAAGACGGCTTCCTCGTGAGCGGCTGCCTGCGCGTGGGGATCGAGGTGGTGAGT GGACCGTACTGA
  • Download Fasta

  • Fasta :-

    MRDSCRARTPSPSHLVPRDCEGASSNTCGSGGGDPTVRPNSTTARPRQRPRHHQQGPRRG CHFTDTPESSGKSSSSSRGSVGGCVVSTWMNAPPNVVGGVERMANNSHQSSPSSCAAAAV NRPPGTSTSPTTQHKQREAAARPTSRAAPTLLAAAVAFGPSACMVASGVAVSGTQRSDHN PTDTAARVAQMPVPGASSAAATPQHDCPLRDSSGYPRGSSPTSLRLHATASTAAGTATCG NLADAQRRRRLKPPPIMSDIASASGRRSCSCPSTRSATAIEATIASSPLATYTVVAASPR AAAAVTHPARTLRSAGSLSSPSNMLPQGPVSPPNPDFKPLGLWGTSPASAAASTSATTLE LEASRATASGADVGSLLTHEMDGGVVIVDPHQAPDDLVCGVCMSVCRQPTAAACGHLFCR RCLQSWMQENRAATCPLDRTPIRVELLHTDARAQRQINALQCRCPASLSRASQWALRQLG SASHVLGDRTGEDEADKDDARGDGRAQLEHPRCTWAGCVSDAAAHLRQCPYIIIECPFAK HGCSAEMPRADMAGHVKNGVADHLLLVSQALDASTEQCRVLQGEVEVLRQRCPMRYPVAL PDVPTGGPAGISEPAVSMYSLSLHGADVPTAALAPALVIAGGGSSRGATPIAITAFPEEV SPESGSPTRVVGPFGRGASAAVDYPFPVFSQSQPPYPHPHHGSSTIATQANVRRRAATDD MLLVAAHRVPSGHDATMPMPADTTALRTSSPLHFGAPPASVSVANTAAAAPTFALPAGAA ALIPAQAASALPRAAPVVGSGHCVDRFVWVITDMASRQAPCYSRSFTSHGLPWYVGMDTT ASWEQCGVYLFTEGHEHRVDFRVILYHEDPARDVVHVVRDWQEDYIGKGWGPLRFINRFT LEQDGFLVSGCLRVGIEVVSGPY

  • title: putative substrate binding site
  • coordinates: Y849,G889,W890,G891
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.07.037070 STPESSGKSS0.991unspLmjF.07.037070 STPESSGKSS0.991unspLmjF.07.037070 STPESSGKSS0.991unspLmjF.07.037073 SSSGKSSSSS0.991unspLmjF.07.037076 SKSSSSSRGS0.995unspLmjF.07.037080 SSSRGSVGGC0.992unspLmjF.07.0370220 SPRGSSPTSL0.993unspLmjF.07.0370298 SVVAASPRAA0.996unspLmjF.07.0370331 SQGPVSPPNP0.993unspLmjF.07.0370661 SPEEVSPESG0.993unspLmjF.07.0370664 SVSPESGSPT0.992unspLmjF.07.0370731 SHRVPSGHDA0.997unspLmjF.07.037011 SARTPSPSHL0.993unspLmjF.07.037041 SVRPNSTTAR0.993unsp

LmjF.07.0370      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India