LmjF.07.1120 | proteasome regulatory non-ATP-ase subunit, putative

UniProt_ID: Q4QIH4

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs:
Computed_GO_Functions:
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs: GO:0097014 GO:0005737 GO:0005654 GO:0000502 GO:0005838
Curated_GO_Components: ciliary plasm cytoplasm nucleoplasm proteasome complex proteasome regulatory particle
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes: cell growth ubiquitin-dependent protein catabolic process

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	LmjF.07.1120	OTHER	0.999849	0.000149	0.000002

No Results

Fasta :-
>LmjF.07.1120 MVEACFLCLDSTEYMRNGDQYPTRMMAEQDAACLLANAKLQANAENTLGFLTTGGNACTV YETLTNNVDAIMTSIGSIPVNGKRCNFSSGLQIASLALSHRTNSRAEKRIVAFVGSPIGE TAAELEALAKKLRKDDVAVDVVAFGVESNVELLQAFVKKVSKKENSRFLAVAARENLTDK LMSNAILLGEDLPEGAEGGGASMSGFGVDPNMDPELAMALRLSMEDEMQRQAAAAAAAAS SAAPESAPASGSAATPAAPAAPAAAPVVDEDELSYENMSEEEMMRRAIALSLQDTAQGAS DTASSPSVPQPATTSEACRNEEENEDDFAKGVEAALEEEEDEENRS
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/898 Sequence name : 898 Sequence length : 346 VALUES OF COMPUTED PARAMETERS Coef20 : 3.705 CoefTot : 0.000 ChDiff : -30 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.212 1.412 0.108 0.502 MesoH : -0.235 0.298 -0.281 0.203 MuHd_075 : 12.606 6.885 3.780 2.115 MuHd_095 : 14.524 6.016 5.308 1.887 MuHd_100 : 30.869 14.274 9.716 2.673 MuHd_105 : 41.456 19.263 12.539 4.712 Hmax_075 : 4.550 6.183 0.195 2.485 Hmax_095 : 3.400 7.300 1.806 2.210 Hmax_100 : 14.800 10.700 3.949 3.590 Hmax_105 : 17.400 16.100 5.145 4.010 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9898 0.0102 DFMC : 0.9676 0.0324

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 346 LmjF.07.1120 MVEACFLCLDSTEYMRNGDQYPTRMMAEQDAACLLANAKLQANAENTLGFLTTGGNACTVYETLTNNVDAIMTSIGSIPV 80 NGKRCNFSSGLQIASLALSHRTNSRAEKRIVAFVGSPIGETAAELEALAKKLRKDDVAVDVVAFGVESNVELLQAFVKKV 160 SKKENSRFLAVAARENLTDKLMSNAILLGEDLPEGAEGGGASMSGFGVDPNMDPELAMALRLSMEDEMQRQAAAAAAAAS 240 SAAPESAPASGSAATPAAPAAPAAAPVVDEDELSYENMSEEEMMRRAIALSLQDTAQGASDTASSPSVPQPATTSEACRN 320 EEENEDDFAKGVEAALEEEEDEENRS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.07.1120 16 DSTEYMR|NG 0.080 . LmjF.07.1120 24 GDQYPTR|MM 0.105 . LmjF.07.1120 39 CLLANAK|LQ 0.063 . LmjF.07.1120 83 SIPVNGK|RC 0.055 . LmjF.07.1120 84 IPVNGKR|CN 0.186 . LmjF.07.1120 101 SLALSHR|TN 0.128 . LmjF.07.1120 105 SHRTNSR|AE 0.089 . LmjF.07.1120 108 TNSRAEK|RI 0.180 . LmjF.07.1120 109 NSRAEKR|IV 0.303 . LmjF.07.1120 130 ELEALAK|KL 0.064 . LmjF.07.1120 131 LEALAKK|LR 0.074 . LmjF.07.1120 133 ALAKKLR|KD 0.105 . LmjF.07.1120 134 LAKKLRK|DD 0.098 . LmjF.07.1120 158 LLQAFVK|KV 0.111 . LmjF.07.1120 159 LQAFVKK|VS 0.119 . LmjF.07.1120 162 FVKKVSK|KE 0.056 . LmjF.07.1120 163 VKKVSKK|EN 0.134 . LmjF.07.1120 167 SKKENSR|FL 0.094 . LmjF.07.1120 174 FLAVAAR|EN 0.087 . LmjF.07.1120 180 RENLTDK|LM 0.068 . LmjF.07.1120 221 ELAMALR|LS 0.091 . LmjF.07.1120 230 MEDEMQR|QA 0.090 . LmjF.07.1120 285 SEEEMMR|RA 0.083 . LmjF.07.1120 286 EEEMMRR|AI 0.126 . LmjF.07.1120 319 TTSEACR|NE 0.144 . LmjF.07.1120 330 NEDDFAK|GV 0.123 . LmjF.07.1120 345 EEDEENR|S- 0.105 . ____________________________^_________________

Fasta :-
>LmjF.07.1120 ATGGTCGAGGCGTGCTTCCTGTGCTTGGACTCCACGGAGTACATGCGCAATGGGGATCAG TACCCCACTCGCATGATGGCGGAGCAGGACGCGGCCTGCCTGCTGGCGAATGCGAAGCTG CAAGCGAACGCTGAAAACACGCTTGGCTTCCTCACGACAGGCGGAAACGCGTGCACGGTG TACGAAACCCTCACAAACAATGTGGACGCTATCATGACCTCGATCGGCAGCATCCCCGTC AACGGTAAGCGCTGCAACTTCAGCTCTGGTCTGCAAATCGCGTCGTTGGCTCTCAGTCAC CGCACCAACTCCCGCGCTGAAAAACGCATTGTCGCCTTCGTTGGCAGCCCGATCGGGGAG ACGGCGGCGGAGCTGGAGGCGCTGGCGAAAAAACTGCGCAAAGACGACGTCGCGGTCGAC GTGGTGGCGTTCGGTGTGGAGTCGAACGTGGAGCTGCTGCAGGCCTTTGTGAAGAAGGTA TCCAAGAAGGAAAACTCGCGTTTCCTGGCGGTGGCCGCGCGCGAGAACCTGACCGACAAA CTGATGAGCAACGCTATTCTCCTCGGCGAGGACCTTCCCGAGGGAGCTGAGGGCGGTGGC GCCAGCATGAGCGGCTTTGGCGTGGACCCCAACATGGATCCGGAGCTAGCCATGGCTCTC CGCCTCTCCATGGAGGACGAGATGCAGCGCCAGGCAGCAGCGGCCGCTGCTGCGGCCTCA TCTGCAGCCCCCGAAAGCGCACCGGCTTCTGGTAGCGCTGCTACTCCTGCTGCTCCGGCA GCCCCAGCAGCGGCACCGGTGGTGGACGAGGATGAGCTGAGCTACGAGAACATGTCGGAG GAGGAGATGATGCGGCGGGCCATCGCCCTCTCGCTGCAGGATACCGCGCAGGGCGCGTCG GACACAGCGTCCTCGCCGTCGGTGCCGCAGCCTGCCACTACCTCGGAAGCGTGCAGGAAT GAGGAGGAGAACGAGGACGACTTTGCGAAAGGCGTCGAGGCTGCCTTGGAGGAGGAGGAG GATGAGGAGAACCGCTCGTGA
Download Fasta

Fasta :-

MVEACFLCLDSTEYMRNGDQYPTRMMAEQDAACLLANAKLQANAENTLGFLTTGGNACTV YETLTNNVDAIMTSIGSIPVNGKRCNFSSGLQIASLALSHRTNSRAEKRIVAFVGSPIGE TAAELEALAKKLRKDDVAVDVVAFGVESNVELLQAFVKKVSKKENSRFLAVAARENLTDK LMSNAILLGEDLPEGAEGGGASMSGFGVDPNMDPELAMALRLSMEDEMQRQAAAAAAAAS SAAPESAPASGSAATPAAPAAPAAAPVVDEDELSYENMSEEEMMRRAIALSLQDTAQGAS DTASSPSVPQPATTSEACRNEEENEDDFAKGVEAALEEEEDEENRS

Ku80 subunit N-terminal domain

title: metal ion-dependent adhesion site (MIDAS)
coordinates: D10,C85,G115

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	LmjF.07.1120	223 S	ALRLSMEDE	0.998	unsp	LmjF.07.1120	223 S	ALRLSMEDE	0.998	unsp	LmjF.07.1120	223 S	ALRLSMEDE	0.998	unsp	LmjF.07.1120	279 S	YENMSEEEM	0.996	unsp	LmjF.07.1120	104 S	HRTNSRAEK	0.992	unsp	LmjF.07.1120	161 S	VKKVSKKEN	0.998	unsp

LmjF.07.1120 | proteasome regulatory non-ATP-ase subunit, putative

ID's

UniProt_ID: Q4QIH4

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs:

Computed_GO_Functions:

Computed_GO_Process_IDs:

Computed_GO_Processes:

Curated_GO_Component_IDs: GO:0097014 GO:0005737 GO:0005654 GO:0000502 GO:0005838

Curated_GO_Components: ciliary plasm cytoplasm nucleoplasm proteasome complex proteasome regulatory particle

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes: cell growth ubiquitin-dependent protein catabolic process

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Ku80 subunit N-terminal domain

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

LmjF.07.1120

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India