LmjF.08.0230 | ABC1 family, putative

  • Computed_GO_Component_IDs:        

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  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

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  • Curated_GO_Component_IDs:        

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No Results
No Results

  • Fasta :-

    >LmjF.08.0230 MTFRFSRAARYGAAAAGFMGTSTAAILLLPKETIPPVLLPSRVLFEGIGRVGRCVYAGGQ IYCDYAFHVTQEDEQELWNEVHRRCAERLVDLAEKNGGLYVKAGQIFANMSHILPYEYCQ VMAVLQDAVVKRPYAEVVAVLEKDLGRPLSEVFSYIDPTPLAAASLAQVHRGRLRNEDAE VAIKVQYIDIAQRFNGDMRTISLMFAAASYLFPGYDFGQIIAKLNDTVAAELDFRIEGRN SDRAAADLRSCGWGERVVCPRIFWNYASRRVLVSQFIPDAVKISDRAGIASMGLNVKEVA TTFFEVIAFQIFRTGFFHGDPHAGNVLVHKLPDGKPQVVLLDFGLCAELNAAQRREMSDI WTASTTHDTPKITEIAHRYDCDDYELFASCFLQHPYEYFANSISSRLDKPYALEKMRETA KNRMTDLNGIVAALPKEYALVLRSIMATKAINRELGEAANRPMCMLHYSLKTSYENLPKI QFLVLMAKAWFAECYASLLLRFTLWRHPELSEVLESSLQLSG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/460 Sequence name : 460 Sequence length : 522 VALUES OF COMPUTED PARAMETERS Coef20 : 4.668 CoefTot : -1.070 ChDiff : -3 ZoneTo : 63 KR : 7 DE : 2 CleavSite : 12 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.953 1.671 0.296 0.644 MesoH : -0.322 0.509 -0.249 0.281 MuHd_075 : 39.224 30.357 11.565 8.624 MuHd_095 : 46.959 26.295 10.981 11.041 MuHd_100 : 48.311 27.428 12.024 10.951 MuHd_105 : 46.933 33.209 12.883 11.148 Hmax_075 : 17.850 28.700 5.287 6.708 Hmax_095 : 14.613 19.863 4.438 6.563 Hmax_100 : 16.800 18.700 5.162 6.860 Hmax_105 : 16.800 18.700 3.783 6.860 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1089 0.8911 DFMC : 0.1064 0.8936 This protein is probably imported in mitochondria. f(Ser) = 0.0476 f(Arg) = 0.0952 CMi = 0.23419 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 522 LmjF.08.0230 MTFRFSRAARYGAAAAGFMGTSTAAILLLPKETIPPVLLPSRVLFEGIGRVGRCVYAGGQIYCDYAFHVTQEDEQELWNE 80 VHRRCAERLVDLAEKNGGLYVKAGQIFANMSHILPYEYCQVMAVLQDAVVKRPYAEVVAVLEKDLGRPLSEVFSYIDPTP 160 LAAASLAQVHRGRLRNEDAEVAIKVQYIDIAQRFNGDMRTISLMFAAASYLFPGYDFGQIIAKLNDTVAAELDFRIEGRN 240 SDRAAADLRSCGWGERVVCPRIFWNYASRRVLVSQFIPDAVKISDRAGIASMGLNVKEVATTFFEVIAFQIFRTGFFHGD 320 PHAGNVLVHKLPDGKPQVVLLDFGLCAELNAAQRREMSDIWTASTTHDTPKITEIAHRYDCDDYELFASCFLQHPYEYFA 400 NSISSRLDKPYALEKMRETAKNRMTDLNGIVAALPKEYALVLRSIMATKAINRELGEAANRPMCMLHYSLKTSYENLPKI 480 QFLVLMAKAWFAECYASLLLRFTLWRHPELSEVLESSLQLSG 560 ....................................................P........................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .......................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmjF.08.0230 4 ---MTFR|FS 0.120 . LmjF.08.0230 7 MTFRFSR|AA 0.383 . LmjF.08.0230 10 RFSRAAR|YG 0.429 . LmjF.08.0230 31 AILLLPK|ET 0.055 . LmjF.08.0230 42 PVLLPSR|VL 0.081 . LmjF.08.0230 50 LFEGIGR|VG 0.068 . LmjF.08.0230 53 GIGRVGR|CV 0.602 *ProP* LmjF.08.0230 83 LWNEVHR|RC 0.087 . LmjF.08.0230 84 WNEVHRR|CA 0.244 . LmjF.08.0230 88 HRRCAER|LV 0.194 . LmjF.08.0230 95 LVDLAEK|NG 0.059 . LmjF.08.0230 102 NGGLYVK|AG 0.062 . LmjF.08.0230 131 LQDAVVK|RP 0.062 . LmjF.08.0230 132 QDAVVKR|PY 0.248 . LmjF.08.0230 143 VVAVLEK|DL 0.076 . LmjF.08.0230 147 LEKDLGR|PL 0.109 . LmjF.08.0230 171 SLAQVHR|GR 0.110 . LmjF.08.0230 173 AQVHRGR|LR 0.075 . LmjF.08.0230 175 VHRGRLR|NE 0.090 . LmjF.08.0230 184 DAEVAIK|VQ 0.056 . LmjF.08.0230 193 YIDIAQR|FN 0.113 . LmjF.08.0230 199 RFNGDMR|TI 0.109 . LmjF.08.0230 223 FGQIIAK|LN 0.067 . LmjF.08.0230 235 AAELDFR|IE 0.073 . LmjF.08.0230 239 DFRIEGR|NS 0.098 . LmjF.08.0230 243 EGRNSDR|AA 0.112 . LmjF.08.0230 249 RAAADLR|SC 0.232 . LmjF.08.0230 256 SCGWGER|VV 0.104 . LmjF.08.0230 261 ERVVCPR|IF 0.094 . LmjF.08.0230 269 FWNYASR|RV 0.108 . LmjF.08.0230 270 WNYASRR|VL 0.133 . LmjF.08.0230 282 FIPDAVK|IS 0.059 . LmjF.08.0230 286 AVKISDR|AG 0.091 . LmjF.08.0230 297 SMGLNVK|EV 0.072 . LmjF.08.0230 313 IAFQIFR|TG 0.078 . LmjF.08.0230 330 GNVLVHK|LP 0.069 . LmjF.08.0230 335 HKLPDGK|PQ 0.058 . LmjF.08.0230 354 ELNAAQR|RE 0.076 . LmjF.08.0230 355 LNAAQRR|EM 0.237 . LmjF.08.0230 371 TTHDTPK|IT 0.086 . LmjF.08.0230 378 ITEIAHR|YD 0.096 . LmjF.08.0230 406 ANSISSR|LD 0.095 . LmjF.08.0230 409 ISSRLDK|PY 0.145 . LmjF.08.0230 415 KPYALEK|MR 0.068 . LmjF.08.0230 417 YALEKMR|ET 0.099 . LmjF.08.0230 421 KMRETAK|NR 0.068 . LmjF.08.0230 423 RETAKNR|MT 0.099 . LmjF.08.0230 436 IVAALPK|EY 0.067 . LmjF.08.0230 443 EYALVLR|SI 0.142 . LmjF.08.0230 449 RSIMATK|AI 0.077 . LmjF.08.0230 453 ATKAINR|EL 0.094 . LmjF.08.0230 461 LGEAANR|PM 0.070 . LmjF.08.0230 471 MLHYSLK|TS 0.072 . LmjF.08.0230 479 SYENLPK|IQ 0.065 . LmjF.08.0230 488 FLVLMAK|AW 0.068 . LmjF.08.0230 501 YASLLLR|FT 0.103 . LmjF.08.0230 506 LRFTLWR|HP 0.104 . ____________________________^_________________

  • Fasta :-

    >LmjF.08.0230 ATGACTTTTCGGTTTAGCCGTGCAGCGCGTTATGGCGCAGCGGCAGCGGGCTTCATGGGA ACCAGCACGGCAGCCATTCTGCTGCTGCCAAAGGAGACGATCCCGCCGGTGCTGCTGCCG TCGCGTGTCCTGTTCGAGGGCATCGGCCGCGTCGGGCGGTGCGTGTACGCGGGTGGGCAG ATCTACTGTGACTACGCCTTCCACGTGACACAGGAGGACGAGCAGGAGCTGTGGAACGAG GTGCACCGGCGGTGCGCGGAGCGGCTGGTCGATCTGGCAGAGAAAAATGGGGGGCTGTAC GTGAAGGCGGGCCAGATCTTCGCGAACATGAGCCACATCCTGCCCTACGAGTACTGCCAA GTGATGGCGGTGCTGCAGGATGCGGTGGTAAAGCGGCCCTACGCGGAAGTTGTAGCCGTG CTGGAGAAGGACTTGGGGCGCCCGCTTAGCGAAGTGTTTTCGTACATCGACCCGACCCCG CTGGCAGCCGCGTCGCTGGCGCAGGTACACCGTGGCCGTCTGCGCAACGAGGACGCAGAG GTGGCAATCAAGGTGCAGTACATCGACATTGCGCAGCGGTTCAACGGTGACATGCGCACC ATCTCCCTCATGTTTGCCGCAGCCAGCTACTTATTTCCTGGCTACGATTTTGGCCAAATT ATCGCGAAGCTGAACGACACCGTCGCGGCCGAGCTCGACTTCCGGATCGAGGGTCGAAAT AGTGACCGCGCCGCGGCGGATCTGCGATCCTGCGGATGGGGCGAGCGCGTCGTGTGCCCA CGCATCTTCTGGAACTACGCCAGCAGGCGCGTGCTCGTGTCGCAGTTCATTCCAGATGCG GTGAAGATATCGGACCGCGCAGGCATTGCGTCGATGGGGCTCAACGTGAAGGAGGTGGCG ACGACGTTCTTCGAGGTCATTGCCTTCCAGATCTTCCGCACCGGCTTCTTCCACGGGGAC CCGCACGCCGGCAATGTCCTCGTGCACAAGCTGCCGGATGGGAAGCCACAAGTAGTCTTG CTAGACTTTGGCCTGTGTGCGGAGCTCAATGCAGCGCAACGCCGCGAGATGAGCGATATC TGGACGGCCTCCACCACCCACGACACTCCCAAGATCACCGAGATCGCGCACCGTTACGAC TGCGACGACTACGAGCTGTTCGCCTCCTGCTTCCTGCAGCACCCGTATGAGTACTTCGCG AACAGCATCAGCAGCCGGCTCGATAAACCGTACGCGCTAGAGAAGATGCGGGAAACCGCG AAGAATCGCATGACGGATCTGAACGGCATCGTAGCAGCACTGCCGAAGGAGTATGCCCTC GTGCTGCGCAGCATCATGGCCACCAAGGCCATCAACCGTGAGCTCGGTGAGGCGGCGAAC CGGCCGATGTGCATGCTGCACTACTCCCTGAAGACCTCTTACGAGAACCTGCCCAAGATC CAGTTCCTGGTACTGATGGCCAAGGCGTGGTTTGCGGAGTGCTACGCGTCGCTCTTGCTG CGGTTCACGTTGTGGCGACACCCGGAGCTGTCTGAGGTGTTGGAGAGCTCGCTGCAGCTG AGCGGCTAA
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  • Fasta :-

    No Results
  • title: putative ATP binding site
  • coordinates: L174,R175,N176,E177,D178,V181,A191,R193,E255,S274,Q275,F276,I277,D320,G324,N325,L327,L341,D342
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.08.0230241 SEGRNSDRAA0.996unspLmjF.08.0230473 SSLKTSYENL0.992unsp

LmjF.08.0230      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India