LmjF.08.1040 | cathepsin L-like protease

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008234      

  • Computed_GO_Functions:  cysteine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.08.1040SP0.0008570.9972370.001906CS pos: 27-28. ARA-IY. Pr: 0.7281
No Results

  • Fasta :-

    >LmjF.08.1040 MATSRAALCAVAVVCVVLAAACAPARAIYVGTPAAALFEEFKRTYQRAYGTLTEEQQRLA NFERNLELMREHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFAAAKQHAGQHYRKAR ADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVS CDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDG YVSMESSERVMAAWLAKNGPISIAVDASSFMSYHSGVLTSCIGEQLNHGVLLVGYNMTGE VPYWVIKNSWGKDWGEKGYVRVTMGVNACLLTGYPVSVHVSQSPTPYL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/283 Sequence name : 283 Sequence length : 348 VALUES OF COMPUTED PARAMETERS Coef20 : 5.343 CoefTot : 1.809 ChDiff : -1 ZoneTo : 38 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.106 2.865 0.714 0.759 MesoH : -0.043 0.345 -0.277 0.284 MuHd_075 : 16.737 12.369 3.434 4.906 MuHd_095 : 15.813 9.876 4.080 5.214 MuHd_100 : 15.970 10.675 3.059 5.048 MuHd_105 : 18.970 11.540 4.334 5.041 Hmax_075 : 15.200 22.800 7.350 5.780 Hmax_095 : 14.175 20.300 6.211 6.388 Hmax_100 : 14.100 19.100 6.567 6.200 Hmax_105 : 13.100 15.983 5.757 5.240 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8390 0.1610 DFMC : 0.8818 0.1182
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 348 LmjF.08.1040 MATSRAALCAVAVVCVVLAAACAPARAIYVGTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHAR 80 FGITKFFDLSEAEFAARYLNGAAYFAAAKQHAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIE 160 SQWAVAGHKLVRLSEQQLVSCDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDG 240 YVSMESSERVMAAWLAKNGPISIAVDASSFMSYHSGVLTSCIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGKDWGEKGYV 320 RVTMGVNACLLTGYPVSVHVSQSPTPYL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.08.1040 5 --MATSR|AA 0.098 . LmjF.08.1040 26 AACAPAR|AI 0.119 . LmjF.08.1040 42 ALFEEFK|RT 0.062 . LmjF.08.1040 43 LFEEFKR|TY 0.156 . LmjF.08.1040 47 FKRTYQR|AY 0.124 . LmjF.08.1040 58 LTEEQQR|LA 0.085 . LmjF.08.1040 64 RLANFER|NL 0.115 . LmjF.08.1040 70 RNLELMR|EH 0.074 . LmjF.08.1040 75 MREHQAR|NP 0.152 . LmjF.08.1040 80 ARNPHAR|FG 0.247 . LmjF.08.1040 85 ARFGITK|FF 0.086 . LmjF.08.1040 97 EAEFAAR|YL 0.095 . LmjF.08.1040 109 AYFAAAK|QH 0.056 . LmjF.08.1040 117 HAGQHYR|KA 0.135 . LmjF.08.1040 118 AGQHYRK|AR 0.074 . LmjF.08.1040 120 QHYRKAR|AD 0.336 . LmjF.08.1040 133 PDAVDWR|EK 0.136 . LmjF.08.1040 135 AVDWREK|GA 0.064 . LmjF.08.1040 142 GAVTPVK|NQ 0.081 . LmjF.08.1040 169 WAVAGHK|LV 0.074 . LmjF.08.1040 172 AGHKLVR|LS 0.123 . LmjF.08.1040 202 AFEWVLR|NM 0.083 . LmjF.08.1040 212 GTVFTEK|SY 0.071 . LmjF.08.1040 237 ELAPGAR|ID 0.099 . LmjF.08.1040 249 SMESSER|VM 0.072 . LmjF.08.1040 257 MAAWLAK|NG 0.064 . LmjF.08.1040 307 VPYWVIK|NS 0.067 . LmjF.08.1040 312 IKNSWGK|DW 0.114 . LmjF.08.1040 317 GKDWGEK|GY 0.067 . LmjF.08.1040 321 GEKGYVR|VT 0.087 . ____________________________^_________________

  • Fasta :-

    >LmjF.08.1040 ATGGCGACGTCGAGGGCCGCTCTCTGCGCTGTTGCGGTTGTGTGCGTGGTGCTTGCGGCT GCCTGCGCGCCCGCGCGCGCGATATACGTGGGCACGCCGGCTGCTGCGCTGTTCGAGGAG TTCAAGCGGACGTACCAGCGCGCGTACGGGACGCTGACCGAGGAGCAGCAGCGGCTGGCG AACTTCGAGCGCAACCTGGAGCTGATGCGCGAGCATCAGGCGAGGAACCCACACGCGAGG TTCGGGATCACGAAGTTCTTTGACCTGTCGGAGGCGGAGTTCGCCGCGCGCTACCTGAAC GGCGCCGCGTACTTCGCAGCGGCGAAGCAGCACGCCGGCCAGCACTACCGCAAGGCGCGC GCGGACCTGTCGGCGGTGCCTGATGCGGTGGACTGGCGCGAGAAGGGCGCCGTGACGCCG GTGAAGAATCAGGGTGCGTGCGGGTCGTGCTGGGCGTTCTCGGCGGTCGGCAACATCGAG TCGCAGTGGGCCGTTGCCGGCCACAAGCTGGTGAGGCTGTCGGAGCAGCAGCTGGTGAGC TGCGATCACGTGGACAATGGTTGCGGCGGCGGGCTGATGCTGCAGGCATTCGAGTGGGTG CTGCGAAACATGAACGGGACCGTGTTCACGGAGAAGAGCTACCCCTACGTCTCCGGCAAC GGTGATGTGCCCGAGTGCTCGAACAGCAGTGAACTCGCTCCCGGTGCGCGAATCGACGGG TACGTGTCGATGGAAAGCAGCGAAAGAGTTATGGCTGCGTGGCTTGCGAAGAATGGCCCC ATCTCGATTGCGGTCGACGCCAGCTCCTTTATGTCTTACCATAGCGGCGTCCTGACCAGC TGCATTGGTGAGCAGCTGAACCACGGCGTGCTGCTCGTTGGGTACAACATGACTGGTGAG GTTCCGTACTGGGTGATCAAGAACTCGTGGGGTAAGGACTGGGGCGAGAAGGGCTACGTG CGCGTGACCATGGGGGTGAACGCGTGCCTGCTCACTGGGTACCCCGTGTCCGTGCATGTG TCGCAGAGCCCCACCCCTTATCTCTAG
  • Download Fasta

  • Fasta :-

    MATSRAALCAVAVVCVVLAAACAPARAIYVGTPAAALFEEFKRTYQRAYGTLTEEQQRLA NFERNLELMREHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFAAAKQHAGQHYRKAR ADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVS CDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDG YVSMESSERVMAAWLAKNGPISIAVDASSFMSYHSGVLTSCIGEQLNHGVLLVGYNMTGE VPYWVIKNSWGKDWGEKGYVRVTMGVNACLLTGYPVSVHVSQSPTPYL

  • title: active site
  • coordinates: Q144,C150,H288,N308
No Results
No Results
IDSitePeptideScoreMethod
LmjF.08.1040243 SDGYVSMESS0.995unsp

LmjF.08.1040      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India