LmjF.08.1080 | cathepsin L-like protease

_IDPredictionOTHERSPmTPCS_Position
LmjF.08.1080OTHER0.9447780.0002090.055013
No Results

  • Fasta :-

    >LmjF.08.1080 MHRGMCDARRCAPRPLPCVRDAWMHRCCVRLSAPALPVTTSPPSLALSPSPPALRRDRLL PTPSTDSHHHHHHHTTTTTTTTSGLLYTRHGLSVRVVASALHVLSPRCPRCLLLFPSLPA SAMATSRAALCAVAVVCVVLAAACAPARAIYVGTPAAALFEEFKRTYQRAYGTLTEEQQR LANFERNLELMREHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFAAAKQHAGQHYRK ARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQL VSCDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARI DGYVSMESSERVMAAWLAKNGPISIAVDASSFMSYHSGVLTSCIGEQLNHGVLLVGYNMT GEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSVHVSQSPTPGPNTTTTTHAPK RVTVKQITCTDYFCRKGCKTTVIPTKECLPNGAGGSFQMECGDHQVLKLTYTSMNCTGEA KYTVTREGKCGISWSGSSKSICQYV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/658 Sequence name : 658 Sequence length : 565 VALUES OF COMPUTED PARAMETERS Coef20 : 4.321 CoefTot : -0.240 ChDiff : 13 ZoneTo : 56 KR : 9 DE : 2 CleavSite : 32 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.106 2.865 0.714 0.759 MesoH : 0.641 1.274 0.112 0.373 MuHd_075 : 49.736 24.440 14.426 9.340 MuHd_095 : 43.514 24.406 11.453 9.762 MuHd_100 : 46.702 24.175 10.546 10.510 MuHd_105 : 52.879 26.247 12.067 10.781 Hmax_075 : 16.100 16.200 5.412 4.850 Hmax_095 : 13.600 11.600 3.541 4.680 Hmax_100 : 12.800 13.700 4.683 4.680 Hmax_105 : 13.000 13.100 4.552 3.955 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3687 0.6313 DFMC : 0.4043 0.5957 This protein is probably imported in mitochondria. f(Ser) = 0.0893 f(Arg) = 0.1607 CMi = 0.30266 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 565 LmjF.08.1080 MHRGMCDARRCAPRPLPCVRDAWMHRCCVRLSAPALPVTTSPPSLALSPSPPALRRDRLLPTPSTDSHHHHHHHTTTTTT 80 TTSGLLYTRHGLSVRVVASALHVLSPRCPRCLLLFPSLPASAMATSRAALCAVAVVCVVLAAACAPARAIYVGTPAAALF 160 EEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFAAAKQHAGQHYRK 240 ARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHVDNGCGGGLMLQAFE 320 WVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDASSFMSYHSGVL 400 TSCIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSVHVSQSPTPGPNTTTTTHAPK 480 RVTVKQITCTDYFCRKGCKTTVIPTKECLPNGAGGSFQMECGDHQVLKLTYTSMNCTGEAKYTVTREGKCGISWSGSSKS 560 ICQYV 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ..... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.08.1080 3 ----MHR|GM 0.114 . LmjF.08.1080 9 RGMCDAR|RC 0.075 . LmjF.08.1080 10 GMCDARR|CA 0.158 . LmjF.08.1080 14 ARRCAPR|PL 0.130 . LmjF.08.1080 20 RPLPCVR|DA 0.140 . LmjF.08.1080 26 RDAWMHR|CC 0.077 . LmjF.08.1080 30 MHRCCVR|LS 0.107 . LmjF.08.1080 55 PSPPALR|RD 0.062 . LmjF.08.1080 56 SPPALRR|DR 0.119 . LmjF.08.1080 58 PALRRDR|LL 0.146 . LmjF.08.1080 89 SGLLYTR|HG 0.070 . LmjF.08.1080 95 RHGLSVR|VV 0.120 . LmjF.08.1080 107 LHVLSPR|CP 0.078 . LmjF.08.1080 110 LSPRCPR|CL 0.155 . LmjF.08.1080 127 SAMATSR|AA 0.112 . LmjF.08.1080 148 AACAPAR|AI 0.119 . LmjF.08.1080 164 ALFEEFK|RT 0.062 . LmjF.08.1080 165 LFEEFKR|TY 0.156 . LmjF.08.1080 169 FKRTYQR|AY 0.124 . LmjF.08.1080 180 LTEEQQR|LA 0.085 . LmjF.08.1080 186 RLANFER|NL 0.115 . LmjF.08.1080 192 RNLELMR|EH 0.074 . LmjF.08.1080 197 MREHQAR|NP 0.152 . LmjF.08.1080 202 ARNPHAR|FG 0.247 . LmjF.08.1080 207 ARFGITK|FF 0.086 . LmjF.08.1080 219 EAEFAAR|YL 0.095 . LmjF.08.1080 231 AYFAAAK|QH 0.056 . LmjF.08.1080 239 HAGQHYR|KA 0.135 . LmjF.08.1080 240 AGQHYRK|AR 0.074 . LmjF.08.1080 242 QHYRKAR|AD 0.336 . LmjF.08.1080 255 PDAVDWR|EK 0.136 . LmjF.08.1080 257 AVDWREK|GA 0.064 . LmjF.08.1080 264 GAVTPVK|NQ 0.081 . LmjF.08.1080 291 WAVAGHK|LV 0.074 . LmjF.08.1080 294 AGHKLVR|LS 0.123 . LmjF.08.1080 324 AFEWVLR|NM 0.083 . LmjF.08.1080 334 GTVFTEK|SY 0.071 . LmjF.08.1080 359 ELAPGAR|ID 0.099 . LmjF.08.1080 371 SMESSER|VM 0.072 . LmjF.08.1080 379 MAAWLAK|NG 0.064 . LmjF.08.1080 429 VPYWVIK|NS 0.067 . LmjF.08.1080 439 GEDWGEK|GY 0.063 . LmjF.08.1080 443 GEKGYVR|VT 0.090 . LmjF.08.1080 480 TTTHAPK|RV 0.082 . LmjF.08.1080 481 TTHAPKR|VT 0.286 . LmjF.08.1080 485 PKRVTVK|QI 0.068 . LmjF.08.1080 495 CTDYFCR|KG 0.077 . LmjF.08.1080 496 TDYFCRK|GC 0.080 . LmjF.08.1080 499 FCRKGCK|TT 0.057 . LmjF.08.1080 506 TTVIPTK|EC 0.069 . LmjF.08.1080 528 GDHQVLK|LT 0.080 . LmjF.08.1080 541 NCTGEAK|YT 0.065 . LmjF.08.1080 546 AKYTVTR|EG 0.090 . LmjF.08.1080 549 TVTREGK|CG 0.095 . LmjF.08.1080 559 SWSGSSK|SI 0.135 . ____________________________^_________________

  • Fasta :-

    >LmjF.08.1080 ATGCACCGGGGAATGTGTGACGCGCGTCGCTGTGCGCCTCGCCCTCTCCCCTGCGTGCGT GATGCATGGATGCACCGCTGCTGTGTGAGGTTGTCCGCGCCTGCGTTGCCTGTGACGACG TCCCCTCCCTCTCTTGCACTGTCCCCGTCCCCACCTGCCCTGCGCCGTGATCGACTTCTC CCGACGCCCTCTACAGACTCTCACCACCACCACCACCATCATACCACCACCACCACCACC ACCACTAGCGGCCTCCTATATACCCGCCACGGTCTTAGCGTGCGAGTTGTGGCGTCTGCG TTGCACGTGCTCTCCCCTCGCTGTCCTCGTTGCCTCCTTCTCTTCCCCTCACTGCCCGCC TCCGCGATGGCGACGTCGAGGGCCGCTCTCTGCGCTGTTGCGGTTGTGTGCGTGGTGCTT GCGGCTGCCTGCGCGCCCGCGCGCGCGATATACGTGGGCACGCCGGCTGCTGCGCTGTTC GAGGAGTTCAAGCGGACGTACCAGCGCGCGTACGGGACGCTGACCGAGGAGCAGCAGCGG CTGGCGAACTTCGAGCGCAACCTGGAGCTGATGCGCGAGCATCAGGCGAGGAACCCACAC GCGAGGTTCGGGATCACGAAGTTCTTTGACCTGTCGGAGGCGGAGTTCGCCGCGCGCTAC CTGAACGGCGCCGCGTACTTCGCAGCGGCGAAGCAGCACGCCGGCCAGCACTACCGCAAG GCGCGCGCGGACCTGTCGGCGGTGCCTGATGCGGTGGACTGGCGCGAGAAGGGCGCCGTG ACGCCGGTGAAGAATCAGGGTGCGTGCGGGTCGTGCTGGGCGTTCTCGGCGGTCGGCAAC ATCGAGTCGCAGTGGGCCGTTGCCGGCCACAAGCTGGTGAGGCTGTCGGAGCAGCAGCTG GTGAGCTGCGATCACGTGGACAATGGTTGCGGCGGCGGGCTGATGCTGCAGGCATTCGAG TGGGTGCTGCGAAACATGAACGGGACCGTGTTCACGGAGAAGAGCTACCCCTACGTCTCC GGCAACGGTGATGTGCCCGAGTGCTCGAACAGCAGTGAACTCGCTCCCGGTGCGCGAATC GACGGGTACGTGTCGATGGAAAGCAGCGAAAGAGTTATGGCTGCGTGGCTTGCGAAGAAT GGCCCCATCTCGATTGCGGTCGACGCCAGCTCCTTTATGTCTTACCATAGCGGCGTCCTG ACCAGCTGCATTGGTGAGCAGCTGAACCACGGCGTGCTGCTCGTTGGGTACAACATGACT GGTGAGGTTCCGTACTGGGTGATCAAGAACTCGTGGGGTGAGGACTGGGGCGAGAAGGGC TACGTGCGCGTGACCATGGGGGTGAACGCGTGCCTGCTCACTGGGTACCCCGTGTCCGTG CATGTGTCGCAGAGCCCCACCCCTGGCCCAAACACGACCACCACGACGCACGCTCCTAAA CGGGTGACGGTGAAGCAGATCACCTGCACGGATTATTTCTGCCGAAAGGGGTGCAAGACG ACGGTGATCCCCACGAAAGAGTGCCTGCCGAACGGGGCAGGCGGCTCTTTTCAGATGGAG TGCGGTGACCATCAGGTGTTGAAGCTCACCTACACCTCCATGAATTGCACTGGTGAGGCC AAGTATACGGTGACAAGGGAGGGTAAGTGCGGGATATCGTGGTCCGGCTCGAGCAAGAGC ATTTGCCAGTACGTGTAG
  • Download Fasta

  • Fasta :-

    MHRGMCDARRCAPRPLPCVRDAWMHRCCVRLSAPALPVTTSPPSLALSPSPPALRRDRLL PTPSTDSHHHHHHHTTTTTTTTSGLLYTRHGLSVRVVASALHVLSPRCPRCLLLFPSLPA SAMATSRAALCAVAVVCVVLAAACAPARAIYVGTPAAALFEEFKRTYQRAYGTLTEEQQR LANFERNLELMREHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFAAAKQHAGQHYRK ARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQL VSCDHVDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARI DGYVSMESSERVMAAWLAKNGPISIAVDASSFMSYHSGVLTSCIGEQLNHGVLLVGYNMT GEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSVHVSQSPTPGPNTTTTTHAPK RVTVKQITCTDYFCRKGCKTTVIPTKECLPNGAGGSFQMECGDHQVLKLTYTSMNCTGEA KYTVTREGKCGISWSGSSKSICQYV

  • title: active site
  • coordinates: Q266,C272,H410,N430
No Results
No Results
IDSitePeptideScoreMethod
LmjF.08.1080365 SDGYVSMESS0.995unsp

LmjF.08.1080      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India