LmjF.09.0600 | cyclin 1

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008236      

  • Computed_GO_Functions:  serine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.09.0600OTHER0.9917990.0030210.005180
No Results

  • Fasta :-

    >LmjF.09.0600 MSAPHLNSVRACLAGSGHDAFSEPVTIDHLLSLVATPKTGVVSVAYVGTATYDLAESQTE QTSLLLQRGWTVRPIQVADPAVKAVNDSDVHFIQTAADIVLVSGGNTLYAVRRWEETGLA QLLKDAAARQVVLAGGSAGAICWFTSGHSDSADPATYLQPSLKRAALKMGLIPQDQISKT EAELADLSTSWSYIRVRGLNILPGMLCPHFDVTQGNGVRREEDFTKMLKRHPTERGIGVD NWALLILKGDGTYESAALPGKTRVATPGNASPTATVPGIFVLDVVDGAIQQRRVPTTGQL SDLLREPAGPAVLDPFERFHAMENPTSSSGSLMQR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/855 Sequence name : 855 Sequence length : 335 VALUES OF COMPUTED PARAMETERS Coef20 : 3.740 CoefTot : -0.227 ChDiff : -5 ZoneTo : 18 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.759 1.482 0.324 0.610 MesoH : -0.355 0.384 -0.317 0.215 MuHd_075 : 11.001 3.329 4.079 1.861 MuHd_095 : 17.088 9.741 5.119 2.449 MuHd_100 : 16.685 11.604 5.196 2.239 MuHd_105 : 14.519 12.280 5.240 2.034 Hmax_075 : 6.300 6.000 0.670 2.980 Hmax_095 : 9.450 7.437 1.680 3.203 Hmax_100 : 9.000 9.500 1.346 3.020 Hmax_105 : 13.300 14.817 4.124 4.153 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9633 0.0367 DFMC : 0.9182 0.0818
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 335 LmjF.09.0600 MSAPHLNSVRACLAGSGHDAFSEPVTIDHLLSLVATPKTGVVSVAYVGTATYDLAESQTEQTSLLLQRGWTVRPIQVADP 80 AVKAVNDSDVHFIQTAADIVLVSGGNTLYAVRRWEETGLAQLLKDAAARQVVLAGGSAGAICWFTSGHSDSADPATYLQP 160 SLKRAALKMGLIPQDQISKTEAELADLSTSWSYIRVRGLNILPGMLCPHFDVTQGNGVRREEDFTKMLKRHPTERGIGVD 240 NWALLILKGDGTYESAALPGKTRVATPGNASPTATVPGIFVLDVVDGAIQQRRVPTTGQLSDLLREPAGPAVLDPFERFH 320 AMENPTSSSGSLMQR 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.09.0600 10 PHLNSVR|AC 0.079 . LmjF.09.0600 38 SLVATPK|TG 0.061 . LmjF.09.0600 68 TSLLLQR|GW 0.100 . LmjF.09.0600 73 QRGWTVR|PI 0.121 . LmjF.09.0600 83 VADPAVK|AV 0.078 . LmjF.09.0600 112 NTLYAVR|RW 0.075 . LmjF.09.0600 113 TLYAVRR|WE 0.248 . LmjF.09.0600 124 GLAQLLK|DA 0.087 . LmjF.09.0600 129 LKDAAAR|QV 0.126 . LmjF.09.0600 163 YLQPSLK|RA 0.065 . LmjF.09.0600 164 LQPSLKR|AA 0.180 . LmjF.09.0600 168 LKRAALK|MG 0.071 . LmjF.09.0600 179 PQDQISK|TE 0.051 . LmjF.09.0600 195 TSWSYIR|VR 0.075 . LmjF.09.0600 197 WSYIRVR|GL 0.115 . LmjF.09.0600 219 TQGNGVR|RE 0.089 . LmjF.09.0600 220 QGNGVRR|EE 0.127 . LmjF.09.0600 226 REEDFTK|ML 0.067 . LmjF.09.0600 229 DFTKMLK|RH 0.053 . LmjF.09.0600 230 FTKMLKR|HP 0.160 . LmjF.09.0600 235 KRHPTER|GI 0.173 . LmjF.09.0600 248 WALLILK|GD 0.066 . LmjF.09.0600 261 SAALPGK|TR 0.058 . LmjF.09.0600 263 ALPGKTR|VA 0.113 . LmjF.09.0600 292 DGAIQQR|RV 0.103 . LmjF.09.0600 293 GAIQQRR|VP 0.154 . LmjF.09.0600 305 QLSDLLR|EP 0.072 . LmjF.09.0600 318 VLDPFER|FH 0.096 . LmjF.09.0600 335 SGSLMQR|-- 0.108 . ____________________________^_________________

  • Fasta :-

    >LmjF.09.0600 ATGAGCGCACCGCACTTGAATTCCGTTCGCGCCTGCTTGGCTGGCTCCGGCCACGACGCC TTCAGTGAGCCTGTCACGATCGACCACCTCCTCTCACTCGTGGCGACACCCAAGACCGGG GTGGTGAGTGTCGCCTACGTTGGTACCGCCACCTACGACCTCGCAGAGAGCCAGACGGAG CAGACATCCCTGCTACTGCAACGCGGCTGGACGGTTCGACCGATCCAAGTTGCTGACCCT GCCGTGAAGGCGGTCAACGACAGCGATGTGCATTTTATTCAAACCGCGGCCGATATCGTA CTCGTCTCGGGCGGCAACACACTCTACGCGGTGCGGCGGTGGGAAGAGACGGGGCTCGCG CAGCTGCTCAAGGACGCTGCGGCGCGCCAGGTCGTTCTGGCGGGCGGCAGTGCCGGTGCG ATCTGCTGGTTCACCTCTGGCCACAGCGACTCCGCAGACCCCGCAACGTACCTGCAGCCG TCGTTGAAGAGGGCGGCGCTGAAGATGGGCCTGATCCCGCAAGATCAGATCTCCAAGACC GAGGCAGAACTCGCGGATCTCAGCACCTCCTGGTCCTACATCCGCGTGCGTGGCCTCAAC ATTCTGCCGGGGATGCTGTGCCCCCACTTTGATGTAACTCAAGGCAACGGCGTACGACGT GAGGAGGACTTCACCAAAATGCTGAAGCGGCACCCGACCGAGCGGGGCATCGGCGTGGAT AACTGGGCGCTGCTCATCCTGAAGGGCGACGGCACGTACGAGAGTGCCGCGCTGCCTGGC AAGACCCGTGTCGCGACCCCAGGCAATGCCTCGCCCACTGCAACGGTACCCGGCATCTTT GTCCTGGATGTGGTAGACGGTGCTATCCAGCAGCGCCGCGTGCCCACGACGGGGCAACTG TCGGATCTCCTGCGAGAGCCGGCGGGGCCAGCGGTGCTGGATCCGTTTGAGCGTTTCCAC GCCATGGAAAACCCGACGTCGTCGTCCGGGTCTCTGATGCAGCGTTGA
  • Download Fasta

  • Fasta :-

    MSAPHLNSVRACLAGSGHDAFSEPVTIDHLLSLVATPKTGVVSVAYVGTATYDLAESQTE QTSLLLQRGWTVRPIQVADPAVKAVNDSDVHFIQTAADIVLVSGGNTLYAVRRWEETGLA QLLKDAAARQVVLAGGSAGAICWFTSGHSDSADPATYLQPSLKRAALKMGLIPQDQISKT EAELADLSTSWSYIRVRGLNILPGMLCPHFDVTQGNGVRREEDFTKMLKRHPTERGIGVD NWALLILKGDGTYESAALPGKTRVATPGNASPTATVPGIFVLDVVDGAIQQRRVPTTGQL SDLLREPAGPAVLDPFERFHAMENPTSSSGSLMQR

  • title: active site pocket
  • coordinates: G105,S137,S151,H209,R220,N241
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.09.0600161 SYLQPSLKRA0.995unspLmjF.09.0600178 SQDQISKTEA0.995unsp

LmjF.09.0600      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India