LmjF.10.0460 | GP63, leishmanolysin

_IDPredictionOTHERSPmTPCS_Position
LmjF.10.0460OTHER0.8627910.0279000.109308
No Results

  • Fasta :-

    >LmjF.10.0460 MSVDSSSTHRRRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGALQHRCVHDAMQARVRQS VADHHKAPGAVSAVGLPYVTLDAAHTAAAADPRPGSARSVVRDVNWGALRIAVSTEDLTD PAYHCARVGQHVKDHAGAIVTCTAEDILTNEKRDILVKHLIPQAVQLHTERLKVQQVQGK WKVTDMVGDICGDFKVPQAHITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAV GVINIPAANIASRYDQLVTRVVTHEMAHALGFSGPFFKDARIVASVPNVRGKNFDVPVIN SSTAVAKAREQYGCDTLEYLEVEDQGGAGSAGSHIKMRNAQDELMAPAAAAGYYTALTMA IFQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQSVTQWPAMFCNESEDAIRCPTSRL SLGACGVTRHPGLPPYWQYFTDPSLAGLSAFMDYCPVVVPYSDGSCTQRASEAHASLLPF NVFSDAARCIDGAFRPKATDGIVKSYAGLCANVQCDTATRTYSVQVHGSNDYTNCTPGLR VELSTVSNAFEGGGYITCPPYVEVCQGNVQAAKDGGNTAAGRRGPRAAATALLVAALLAV AL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/766 Sequence name : 766 Sequence length : 602 VALUES OF COMPUTED PARAMETERS Coef20 : 5.330 CoefTot : 1.499 ChDiff : -6 ZoneTo : 50 KR : 6 DE : 1 CleavSite : 22 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.729 2.153 0.314 0.638 MesoH : -0.060 0.484 -0.229 0.278 MuHd_075 : 34.679 21.836 9.015 8.112 MuHd_095 : 27.912 16.095 5.622 6.229 MuHd_100 : 24.264 13.272 5.516 5.662 MuHd_105 : 27.922 12.996 6.080 6.394 Hmax_075 : 16.100 23.333 5.126 6.580 Hmax_095 : 14.400 8.225 1.704 5.780 Hmax_100 : 14.600 10.100 1.226 5.450 Hmax_105 : 15.000 19.200 3.382 6.120 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3955 0.6045 DFMC : 0.2438 0.7562 This protein is probably imported in mitochondria. f(Ser) = 0.0800 f(Arg) = 0.1200 CMi = 0.33613 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 602 LmjF.10.0460 MSVDSSSTHRRRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGALQHRCVHDAMQARVRQSVADHHKAPGAVSAVGLPYVT 80 LDAAHTAAAADPRPGSARSVVRDVNWGALRIAVSTEDLTDPAYHCARVGQHVKDHAGAIVTCTAEDILTNEKRDILVKHL 160 IPQAVQLHTERLKVQQVQGKWKVTDMVGDICGDFKVPQAHITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAV 240 GVINIPAANIASRYDQLVTRVVTHEMAHALGFSGPFFKDARIVASVPNVRGKNFDVPVINSSTAVAKAREQYGCDTLEYL 320 EVEDQGGAGSAGSHIKMRNAQDELMAPAAAAGYYTALTMAIFQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQSVTQ 400 WPAMFCNESEDAIRCPTSRLSLGACGVTRHPGLPPYWQYFTDPSLAGLSAFMDYCPVVVPYSDGSCTQRASEAHASLLPF 480 NVFSDAARCIDGAFRPKATDGIVKSYAGLCANVQCDTATRTYSVQVHGSNDYTNCTPGLRVELSTVSNAFEGGGYITCPP 560 YVEVCQGNVQAAKDGGNTAAGRRGPRAAATALLVAALLAVAL 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 .......................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.10.0460 10 DSSSTHR|RR 0.086 . LmjF.10.0460 11 SSSTHRR|RC 0.209 . LmjF.10.0460 12 SSTHRRR|CV 0.244 . LmjF.10.0460 17 RRCVAAR|LV 0.154 . LmjF.10.0460 20 VAARLVR|LA 0.261 . LmjF.10.0460 47 AGALQHR|CV 0.185 . LmjF.10.0460 56 HDAMQAR|VR 0.098 . LmjF.10.0460 58 AMQARVR|QS 0.084 . LmjF.10.0460 66 SVADHHK|AP 0.079 . LmjF.10.0460 93 AAAADPR|PG 0.086 . LmjF.10.0460 98 PRPGSAR|SV 0.251 . LmjF.10.0460 102 SARSVVR|DV 0.212 . LmjF.10.0460 110 VNWGALR|IA 0.082 . LmjF.10.0460 127 PAYHCAR|VG 0.090 . LmjF.10.0460 133 RVGQHVK|DH 0.074 . LmjF.10.0460 152 DILTNEK|RD 0.053 . LmjF.10.0460 153 ILTNEKR|DI 0.218 . LmjF.10.0460 158 KRDILVK|HL 0.074 . LmjF.10.0460 171 VQLHTER|LK 0.076 . LmjF.10.0460 173 LHTERLK|VQ 0.060 . LmjF.10.0460 180 VQQVQGK|WK 0.068 . LmjF.10.0460 182 QVQGKWK|VT 0.080 . LmjF.10.0460 195 DICGDFK|VP 0.060 . LmjF.10.0460 253 AANIASR|YD 0.101 . LmjF.10.0460 260 YDQLVTR|VV 0.124 . LmjF.10.0460 278 FSGPFFK|DA 0.095 . LmjF.10.0460 281 PFFKDAR|IV 0.109 . LmjF.10.0460 290 ASVPNVR|GK 0.078 . LmjF.10.0460 292 VPNVRGK|NF 0.075 . LmjF.10.0460 307 SSTAVAK|AR 0.085 . LmjF.10.0460 309 TAVAKAR|EQ 0.113 . LmjF.10.0460 336 SAGSHIK|MR 0.073 . LmjF.10.0460 338 GSHIKMR|NA 0.220 . LmjF.10.0460 374 YQADFSK|AE 0.058 . LmjF.10.0460 392 CAFLTNK|CM 0.071 . LmjF.10.0460 414 ESEDAIR|CP 0.072 . LmjF.10.0460 419 IRCPTSR|LS 0.087 . LmjF.10.0460 429 GACGVTR|HP 0.094 . LmjF.10.0460 469 DGSCTQR|AS 0.113 . LmjF.10.0460 488 VFSDAAR|CI 0.165 . LmjF.10.0460 495 CIDGAFR|PK 0.072 . LmjF.10.0460 497 DGAFRPK|AT 0.080 . LmjF.10.0460 504 ATDGIVK|SY 0.070 . LmjF.10.0460 520 QCDTATR|TY 0.094 . LmjF.10.0460 540 NCTPGLR|VE 0.057 . LmjF.10.0460 573 GNVQAAK|DG 0.079 . LmjF.10.0460 582 GNTAAGR|RG 0.074 . LmjF.10.0460 583 NTAAGRR|GP 0.137 . LmjF.10.0460 586 AGRRGPR|AA 0.340 . ____________________________^_________________

  • Fasta :-

    >LmjF.10.0460 ATGTCCGTGGACAGCAGCAGCACGCACCGGCGCCGCTGCGTCGCCGCGCGCCTGGTGCGC CTCGCGGCTGCCGGCGCCGCAGTCACCGTTGCTGTCGGCACCGCGGCCGCGTGGGCACAC GCCGGTGCGCTGCAGCACCGCTGCGTCCACGACGCGATGCAGGCACGCGTGCGGCAGTCG GTGGCGGACCACCACAAGGCCCCCGGCGCGGTGTCCGCGGTGGGTCTGCCGTACGTTACT CTCGACGCCGCGCACACCGCGGCCGCCGCCGATCCCAGGCCGGGCAGCGCGCGCAGCGTC GTGCGCGACGTGAACTGGGGCGCGCTGCGCATCGCCGTCTCCACCGAGGACCTCACCGAC CCCGCCTACCACTGCGCTCGCGTTGGGCAGCATGTCAAAGACCACGCCGGCGCCATCGTC ACCTGCACCGCCGAGGACATCCTCACCAACGAGAAGCGCGACATCCTGGTCAAGCACCTC ATCCCGCAGGCGGTGCAGCTGCACACGGAGCGGCTGAAGGTGCAGCAGGTGCAGGGCAAG TGGAAGGTGACGGACATGGTCGGCGATATCTGTGGCGACTTCAAGGTGCCGCAGGCGCAC ATCACCGAGGGCTTCAGCAACACCGACTTCGTGATGTACGTCGCCTCCGTGCCGAGTGAG GAGGGTGTGCTGGCGTGGGCCACGACCTGCCAGACGTTCTCTGACGGCCATCCAGCCGTG GGCGTCATCAACATCCCCGCGGCGAACATTGCGTCGCGGTACGACCAGCTCGTCACGCGT GTCGTCACGCACGAGATGGCGCACGCGCTCGGCTTCAGCGGCCCATTCTTCAAAGACGCC CGCATCGTGGCGAGCGTTCCGAACGTTCGAGGCAAGAACTTCGATGTTCCCGTGATCAAC AGCAGCACGGCAGTGGCGAAGGCGCGCGAGCAGTACGGCTGCGACACCTTGGAGTATCTG GAGGTGGAGGACCAGGGCGGTGCGGGCTCCGCCGGGTCGCACATCAAGATGCGCAACGCG CAGGACGAGCTCATGGCGCCTGCTGCAGCTGCCGGGTACTACACCGCCCTGACCATGGCC ATCTTCCAGGACCTCGGCTTCTACCAGGCGGACTTCAGCAAGGCCGAGGTGATGCCGTGG GGCCAGAACGCCGGCTGCGCCTTCCTCACCAACAAGTGCATGGAGCAGAGCGTCACGCAG TGGCCGGCGATGTTCTGCAATGAGAGCGAGGACGCCATCCGCTGCCCCACCAGTCGTCTC AGCCTCGGTGCATGCGGTGTTACCCGTCACCCGGGCCTTCCGCCGTACTGGCAGTACTTC ACGGACCCGTCCCTCGCCGGCCTCTCCGCCTTCATGGACTACTGCCCTGTCGTGGTGCCC TACAGTGATGGCAGCTGCACGCAGCGTGCCTCTGAGGCACATGCTTCGTTGCTGCCCTTC AACGTCTTCTCTGACGCGGCGCGCTGCATCGATGGTGCCTTCAGACCGAAGGCAACTGAC GGCATAGTCAAGTCGTACGCCGGCCTGTGCGCCAACGTGCAGTGTGACACGGCCACACGC ACGTACAGCGTGCAGGTGCACGGCAGTAACGACTACACCAACTGCACGCCGGGCCTCAGA GTTGAGCTGAGCACCGTGAGCAACGCCTTCGAGGGGGGCGGCTACATCACGTGCCCGCCG TACGTGGAGGTGTGCCAGGGCAACGTGCAGGCTGCCAAGGACGGCGGCAACACGGCGGCT GGTCGTCGTGGTCCGCGCGCCGCGGCGACGGCGCTGCTGGTGGCCGCGCTGCTGGCCGTG GCGCTCTAG
  • Download Fasta

  • Fasta :-

    MSVDSSSTHRRRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGALQHRCVHDAMQARVRQS VADHHKAPGAVSAVGLPYVTLDAAHTAAAADPRPGSARSVVRDVNWGALRIAVSTEDLTD PAYHCARVGQHVKDHAGAIVTCTAEDILTNEKRDILVKHLIPQAVQLHTERLKVQQVQGK WKVTDMVGDICGDFKVPQAHITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAV GVINIPAANIASRYDQLVTRVVTHEMAHALGFSGPFFKDARIVASVPNVRGKNFDVPVIN SSTAVAKAREQYGCDTLEYLEVEDQGGAGSAGSHIKMRNAQDELMAPAAAAGYYTALTMA IFQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQSVTQWPAMFCNESEDAIRCPTSRL SLGACGVTRHPGLPPYWQYFTDPSLAGLSAFMDYCPVVVPYSDGSCTQRASEAHASLLPF NVFSDAARCIDGAFRPKATDGIVKSYAGLCANVQCDTATRTYSVQVHGSNDYTNCTPGLR VELSTVSNAFEGGGYITCPPYVEVCQGNVQAAKDGGNTAAGRRGPRAAATALLVAALLAV AL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.10.046060 SRVRQSVADH0.996unspLmjF.10.0460114 SRIAVSTEDL0.994unsp

LmjF.10.0460      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India