LmjF.10.0470 | GP63, leishmanolysin

_IDPredictionOTHERSPmTPCS_Position
LmjF.10.0470OTHER0.8667480.0251040.108148
No Results

  • Fasta :-

    >LmjF.10.0470 MSVDSSSTHRRRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGALQHRCVHDAMQARVRQS VADHHKAPGAVSAVGLPYVTLDAAHTAAAADPRPGSARSVVRDVNWGALRIAVSTEDLTD PAYHCARVGQRVNNHAGAIVTCTAEDILTNEKRNILVKYLIPQAVQLHKERLKVQQVQGK WKVTDMVGEICGDFKVPQAHITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAV GVINIPAANIASRYDQLVTRVVTHEMAHALGFSGPFFEDARIVANVSNVRGKNFDVPVIN SSTAVAKAREQYGCDTLEYLEVEDQGGAGSAGSHIKMRNAQDELMAPAAAAGYYTALTMA IFQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQNITQWPAMFCNESEDAIRCPTSRL LLGTCGIREYELPLPRYWQYFTNASLGGYSPFLDYCPFVIDYADGSCNQDASSAEEFFTA FNVFSDAARCIDGAFRPKATNGIVKSYAGLCANVQCDTATRTYSVQVHGSNDYTNCTPGL RVELSTVSKTFEEGGYITCPPYVEVCQGNVQAAKDFDGDSDSSSSSSDAADKAAIERWNE RMAGLATAATVLLGVVLSLMALVVVWLLLVSCPRWCCKVGGLPT
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/215 Sequence name : 215 Sequence length : 644 VALUES OF COMPUTED PARAMETERS Coef20 : 5.330 CoefTot : 1.499 ChDiff : -13 ZoneTo : 50 KR : 6 DE : 1 CleavSite : 22 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.418 2.918 0.496 0.916 MesoH : -0.075 0.607 -0.223 0.280 MuHd_075 : 34.679 21.836 9.015 8.112 MuHd_095 : 27.912 16.095 5.622 6.229 MuHd_100 : 24.264 13.272 5.516 5.662 MuHd_105 : 27.922 12.996 6.080 6.394 Hmax_075 : 16.100 23.333 5.126 6.580 Hmax_095 : 14.400 8.225 1.704 5.780 Hmax_100 : 14.600 10.100 1.226 5.450 Hmax_105 : 15.000 19.200 3.382 6.120 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5423 0.4577 DFMC : 0.4111 0.5889 This protein is probably imported in mitochondria. f(Ser) = 0.0800 f(Arg) = 0.1200 CMi = 0.33613 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 644 LmjF.10.0470 MSVDSSSTHRRRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGALQHRCVHDAMQARVRQSVADHHKAPGAVSAVGLPYVT 80 LDAAHTAAAADPRPGSARSVVRDVNWGALRIAVSTEDLTDPAYHCARVGQRVNNHAGAIVTCTAEDILTNEKRNILVKYL 160 IPQAVQLHKERLKVQQVQGKWKVTDMVGEICGDFKVPQAHITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAV 240 GVINIPAANIASRYDQLVTRVVTHEMAHALGFSGPFFEDARIVANVSNVRGKNFDVPVINSSTAVAKAREQYGCDTLEYL 320 EVEDQGGAGSAGSHIKMRNAQDELMAPAAAAGYYTALTMAIFQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQNITQ 400 WPAMFCNESEDAIRCPTSRLLLGTCGIREYELPLPRYWQYFTNASLGGYSPFLDYCPFVIDYADGSCNQDASSAEEFFTA 480 FNVFSDAARCIDGAFRPKATNGIVKSYAGLCANVQCDTATRTYSVQVHGSNDYTNCTPGLRVELSTVSKTFEEGGYITCP 560 PYVEVCQGNVQAAKDFDGDSDSSSSSSDAADKAAIERWNERMAGLATAATVLLGVVLSLMALVVVWLLLVSCPRWCCKVG 640 GLPT 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.10.0470 10 DSSSTHR|RR 0.086 . LmjF.10.0470 11 SSSTHRR|RC 0.209 . LmjF.10.0470 12 SSTHRRR|CV 0.244 . LmjF.10.0470 17 RRCVAAR|LV 0.154 . LmjF.10.0470 20 VAARLVR|LA 0.261 . LmjF.10.0470 47 AGALQHR|CV 0.185 . LmjF.10.0470 56 HDAMQAR|VR 0.098 . LmjF.10.0470 58 AMQARVR|QS 0.084 . LmjF.10.0470 66 SVADHHK|AP 0.079 . LmjF.10.0470 93 AAAADPR|PG 0.086 . LmjF.10.0470 98 PRPGSAR|SV 0.251 . LmjF.10.0470 102 SARSVVR|DV 0.212 . LmjF.10.0470 110 VNWGALR|IA 0.082 . LmjF.10.0470 127 PAYHCAR|VG 0.087 . LmjF.10.0470 131 CARVGQR|VN 0.091 . LmjF.10.0470 152 DILTNEK|RN 0.052 . LmjF.10.0470 153 ILTNEKR|NI 0.156 . LmjF.10.0470 158 KRNILVK|YL 0.093 . LmjF.10.0470 169 QAVQLHK|ER 0.060 . LmjF.10.0470 171 VQLHKER|LK 0.086 . LmjF.10.0470 173 LHKERLK|VQ 0.063 . LmjF.10.0470 180 VQQVQGK|WK 0.069 . LmjF.10.0470 182 QVQGKWK|VT 0.078 . LmjF.10.0470 195 EICGDFK|VP 0.060 . LmjF.10.0470 253 AANIASR|YD 0.101 . LmjF.10.0470 260 YDQLVTR|VV 0.124 . LmjF.10.0470 281 PFFEDAR|IV 0.089 . LmjF.10.0470 290 ANVSNVR|GK 0.075 . LmjF.10.0470 292 VSNVRGK|NF 0.072 . LmjF.10.0470 307 SSTAVAK|AR 0.085 . LmjF.10.0470 309 TAVAKAR|EQ 0.113 . LmjF.10.0470 336 SAGSHIK|MR 0.073 . LmjF.10.0470 338 GSHIKMR|NA 0.220 . LmjF.10.0470 374 YQADFSK|AE 0.058 . LmjF.10.0470 392 CAFLTNK|CM 0.070 . LmjF.10.0470 414 ESEDAIR|CP 0.071 . LmjF.10.0470 419 IRCPTSR|LL 0.081 . LmjF.10.0470 428 LGTCGIR|EY 0.072 . LmjF.10.0470 436 YELPLPR|YW 0.077 . LmjF.10.0470 489 VFSDAAR|CI 0.159 . LmjF.10.0470 496 CIDGAFR|PK 0.075 . LmjF.10.0470 498 DGAFRPK|AT 0.075 . LmjF.10.0470 505 ATNGIVK|SY 0.082 . LmjF.10.0470 521 QCDTATR|TY 0.094 . LmjF.10.0470 541 NCTPGLR|VE 0.056 . LmjF.10.0470 549 ELSTVSK|TF 0.078 . LmjF.10.0470 574 GNVQAAK|DF 0.081 . LmjF.10.0470 592 SSDAADK|AA 0.065 . LmjF.10.0470 597 DKAAIER|WN 0.093 . LmjF.10.0470 601 IERWNER|MA 0.130 . LmjF.10.0470 634 LLVSCPR|WC 0.100 . LmjF.10.0470 638 CPRWCCK|VG 0.062 . ____________________________^_________________

  • Fasta :-

    >LmjF.10.0470 ATGTCCGTGGACAGCAGCAGCACGCACCGGCGCCGCTGCGTCGCCGCGCGCCTGGTGCGC CTCGCGGCTGCCGGCGCCGCAGTCACCGTTGCTGTCGGCACCGCGGCCGCGTGGGCACAC GCCGGTGCGCTGCAGCACCGCTGCGTCCACGACGCGATGCAGGCACGCGTGCGGCAGTCG GTGGCGGACCACCACAAGGCCCCCGGCGCGGTGTCCGCGGTGGGTCTGCCGTACGTTACT CTCGACGCCGCGCACACCGCGGCCGCCGCCGATCCCAGGCCGGGCAGCGCGCGCAGCGTC GTGCGCGACGTGAACTGGGGCGCGCTGCGCATCGCCGTCTCCACCGAGGACCTCACCGAC CCCGCCTACCACTGCGCTCGCGTCGGGCAGCGTGTCAACAACCACGCCGGCGCCATCGTC ACCTGCACCGCCGAGGACATCCTCACCAACGAGAAGCGCAACATCCTGGTCAAGTACCTC ATCCCGCAGGCGGTGCAGCTGCACAAGGAGCGGCTGAAGGTGCAGCAGGTGCAGGGCAAG TGGAAGGTGACGGACATGGTCGGCGAGATCTGTGGCGACTTCAAGGTGCCGCAGGCGCAC ATCACCGAGGGCTTCAGCAACACCGACTTCGTGATGTACGTCGCCTCCGTGCCGAGTGAG GAGGGTGTGCTGGCGTGGGCCACGACCTGCCAGACGTTCTCTGACGGCCATCCAGCCGTG GGCGTCATCAACATCCCCGCGGCGAACATTGCGTCGCGGTACGACCAGCTCGTCACGCGT GTCGTCACGCACGAGATGGCGCACGCGCTCGGCTTCAGCGGCCCATTCTTCGAGGACGCC CGCATCGTGGCGAACGTTTCGAACGTTCGAGGCAAGAACTTCGATGTTCCCGTGATCAAC AGCAGCACGGCAGTGGCGAAGGCGCGCGAGCAGTACGGCTGCGACACCTTGGAGTATCTG GAGGTGGAGGACCAGGGCGGTGCGGGCTCCGCCGGGTCGCACATCAAGATGCGCAACGCG CAGGACGAGCTCATGGCGCCTGCTGCAGCTGCCGGGTACTACACCGCCCTGACCATGGCC ATCTTCCAGGACCTCGGCTTCTACCAGGCGGACTTCAGCAAGGCCGAGGTGATGCCGTGG GGCCAGAACGCCGGCTGCGCCTTCCTCACCAACAAGTGCATGGAGCAGAACATCACGCAG TGGCCGGCGATGTTCTGCAATGAGAGCGAGGACGCCATCCGCTGCCCCACCAGTCGTCTC CTCCTCGGAACGTGTGGTATAAGGGAATACGAACTGCCGTTGCCGCGATACTGGCAGTAC TTCACCAACGCGTCTCTTGGGGGCTACTCGCCATTCCTGGACTACTGCCCGTTTGTTATC GACTACGCTGATGGCTCGTGCAATCAGGACGCATCGTCGGCAGAGGAGTTCTTCACTGCA TTCAACGTCTTCTCTGACGCGGCGCGCTGCATCGATGGTGCCTTCAGACCGAAGGCAACT AACGGCATAGTCAAGTCGTACGCCGGCCTGTGCGCCAACGTGCAGTGTGACACGGCCACA CGCACGTACAGCGTGCAGGTGCACGGCAGTAACGACTACACCAACTGCACGCCGGGCCTC AGAGTTGAGCTGAGCACCGTGAGCAAAACCTTCGAGGAAGGCGGCTACATCACGTGCCCG CCGTACGTGGAGGTGTGCCAGGGCAACGTGCAGGCTGCCAAGGACTTTGATGGCGACTCC GACAGCTCCAGCAGCTCCAGTGACGCTGCCGACAAGGCGGCGATTGAGCGGTGGAATGAG AGGATGGCCGGCCTGGCTACTGCGGCGACGGTGCTGCTAGGAGTAGTTCTCTCTCTCATG GCACTCGTCGTGGTGTGGCTACTGCTTGTCAGCTGCCCCAGGTGGTGTTGCAAAGTTGGG GGGCTCCCGACGTGA
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  • Fasta :-

    MSVDSSSTHRRRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGALQHRCVHDAMQARVRQS VADHHKAPGAVSAVGLPYVTLDAAHTAAAADPRPGSARSVVRDVNWGALRIAVSTEDLTD PAYHCARVGQRVNNHAGAIVTCTAEDILTNEKRNILVKYLIPQAVQLHKERLKVQQVQGK WKVTDMVGEICGDFKVPQAHITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAV GVINIPAANIASRYDQLVTRVVTHEMAHALGFSGPFFEDARIVANVSNVRGKNFDVPVIN SSTAVAKAREQYGCDTLEYLEVEDQGGAGSAGSHIKMRNAQDELMAPAAAAGYYTALTMA IFQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQNITQWPAMFCNESEDAIRCPTSRL LLGTCGIREYELPLPRYWQYFTNASLGGYSPFLDYCPFVIDYADGSCNQDASSAEEFFTA FNVFSDAARCIDGAFRPKATNGIVKSYAGLCANVQCDTATRTYSVQVHGSNDYTNCTPGL RVELSTVSKTFEEGGYITCPPYVEVCQGNVQAAKDFDGDSDSSSSSSDAADKAAIERWNE RMAGLATAATVLLGVVLSLMALVVVWLLLVSCPRWCCKVGGLPT

    No Results
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No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.10.0470473 SQDASSAEEF0.996unspLmjF.10.0470473 SQDASSAEEF0.996unspLmjF.10.0470473 SQDASSAEEF0.996unspLmjF.10.0470583 SDSDSSSSSS0.991unspLmjF.10.0470585 SDSSSSSSDA0.997unspLmjF.10.047060 SRVRQSVADH0.996unspLmjF.10.0470114 SRIAVSTEDL0.994unsp

LmjF.10.0470      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India