LmjF.10.0480 | GP63, leishmanolysin

_IDPredictionOTHERSPmTPCS_Position
LmjF.10.0480OTHER0.8633000.0273760.109324
No Results

  • Fasta :-

    >LmjF.10.0480 MSVDSSSTHRRRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGALQHRCVHDAMQARVRQS VADHHKAPGAVSAVGLPYVTLDAAHTAAAADPRPGSARSVVRDVNWGALRIAVSTEDLTD PAYHCARVGQHVKDHAGAIVTCTAEDILTNEKRDILVKHLIPQAVQLHTERLKVQQVQGK WKVTDMVGEICGDFKVPQAHITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAV GVINIPAANIASRYDQLVTRVVTHEMAHALGFSGPFFEDARIVASVPNVRGKNFDVPVIN SSTAVAKAREQYGCDTLEYLEMEDQGSAGSAGSHIKMRNAQDELMAAASGAGYYTALTMA ILQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQNITQWPAMFCNESEDAIRCPTSRL SLGACGVTRHPGLPPYWQYFTDPSLAGVSAFMDYCPVVVPYSDISCTQRASEAHASLLPF NVFSDAARCIDGAFRPKATNGIVKSYAGLCANVQCDTATRTYSVQVHGSNDYTNCTPGLR VELSTVSNAFEGGGYITCPPYVEVCQGNVQAAKDGGNTAAGRRGPRAAATALLVAALLAV AL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/671 Sequence name : 671 Sequence length : 602 VALUES OF COMPUTED PARAMETERS Coef20 : 5.330 CoefTot : 1.499 ChDiff : -7 ZoneTo : 50 KR : 6 DE : 1 CleavSite : 22 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.729 2.153 0.314 0.638 MesoH : -0.079 0.484 -0.217 0.281 MuHd_075 : 34.679 21.836 9.015 8.112 MuHd_095 : 27.912 16.095 5.622 6.229 MuHd_100 : 24.264 13.272 5.516 5.662 MuHd_105 : 27.922 12.996 6.080 6.394 Hmax_075 : 16.100 23.333 5.126 6.580 Hmax_095 : 14.400 8.225 1.704 5.780 Hmax_100 : 14.600 10.100 1.226 5.450 Hmax_105 : 15.000 19.200 3.382 6.120 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4170 0.5830 DFMC : 0.2558 0.7442 This protein is probably imported in mitochondria. f(Ser) = 0.0800 f(Arg) = 0.1200 CMi = 0.33613 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 602 LmjF.10.0480 MSVDSSSTHRRRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGALQHRCVHDAMQARVRQSVADHHKAPGAVSAVGLPYVT 80 LDAAHTAAAADPRPGSARSVVRDVNWGALRIAVSTEDLTDPAYHCARVGQHVKDHAGAIVTCTAEDILTNEKRDILVKHL 160 IPQAVQLHTERLKVQQVQGKWKVTDMVGEICGDFKVPQAHITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAV 240 GVINIPAANIASRYDQLVTRVVTHEMAHALGFSGPFFEDARIVASVPNVRGKNFDVPVINSSTAVAKAREQYGCDTLEYL 320 EMEDQGSAGSAGSHIKMRNAQDELMAAASGAGYYTALTMAILQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQNITQ 400 WPAMFCNESEDAIRCPTSRLSLGACGVTRHPGLPPYWQYFTDPSLAGVSAFMDYCPVVVPYSDISCTQRASEAHASLLPF 480 NVFSDAARCIDGAFRPKATNGIVKSYAGLCANVQCDTATRTYSVQVHGSNDYTNCTPGLRVELSTVSNAFEGGGYITCPP 560 YVEVCQGNVQAAKDGGNTAAGRRGPRAAATALLVAALLAVAL 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 .......................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.10.0480 10 DSSSTHR|RR 0.086 . LmjF.10.0480 11 SSSTHRR|RC 0.209 . LmjF.10.0480 12 SSTHRRR|CV 0.244 . LmjF.10.0480 17 RRCVAAR|LV 0.154 . LmjF.10.0480 20 VAARLVR|LA 0.261 . LmjF.10.0480 47 AGALQHR|CV 0.185 . LmjF.10.0480 56 HDAMQAR|VR 0.098 . LmjF.10.0480 58 AMQARVR|QS 0.084 . LmjF.10.0480 66 SVADHHK|AP 0.079 . LmjF.10.0480 93 AAAADPR|PG 0.086 . LmjF.10.0480 98 PRPGSAR|SV 0.251 . LmjF.10.0480 102 SARSVVR|DV 0.212 . LmjF.10.0480 110 VNWGALR|IA 0.082 . LmjF.10.0480 127 PAYHCAR|VG 0.090 . LmjF.10.0480 133 RVGQHVK|DH 0.074 . LmjF.10.0480 152 DILTNEK|RD 0.053 . LmjF.10.0480 153 ILTNEKR|DI 0.218 . LmjF.10.0480 158 KRDILVK|HL 0.074 . LmjF.10.0480 171 VQLHTER|LK 0.076 . LmjF.10.0480 173 LHTERLK|VQ 0.060 . LmjF.10.0480 180 VQQVQGK|WK 0.069 . LmjF.10.0480 182 QVQGKWK|VT 0.078 . LmjF.10.0480 195 EICGDFK|VP 0.060 . LmjF.10.0480 253 AANIASR|YD 0.101 . LmjF.10.0480 260 YDQLVTR|VV 0.124 . LmjF.10.0480 281 PFFEDAR|IV 0.096 . LmjF.10.0480 290 ASVPNVR|GK 0.078 . LmjF.10.0480 292 VPNVRGK|NF 0.075 . LmjF.10.0480 307 SSTAVAK|AR 0.085 . LmjF.10.0480 309 TAVAKAR|EQ 0.113 . LmjF.10.0480 336 SAGSHIK|MR 0.072 . LmjF.10.0480 338 GSHIKMR|NA 0.215 . LmjF.10.0480 374 YQADFSK|AE 0.058 . LmjF.10.0480 392 CAFLTNK|CM 0.070 . LmjF.10.0480 414 ESEDAIR|CP 0.072 . LmjF.10.0480 419 IRCPTSR|LS 0.087 . LmjF.10.0480 429 GACGVTR|HP 0.094 . LmjF.10.0480 469 DISCTQR|AS 0.115 . LmjF.10.0480 488 VFSDAAR|CI 0.165 . LmjF.10.0480 495 CIDGAFR|PK 0.075 . LmjF.10.0480 497 DGAFRPK|AT 0.075 . LmjF.10.0480 504 ATNGIVK|SY 0.082 . LmjF.10.0480 520 QCDTATR|TY 0.094 . LmjF.10.0480 540 NCTPGLR|VE 0.057 . LmjF.10.0480 573 GNVQAAK|DG 0.079 . LmjF.10.0480 582 GNTAAGR|RG 0.074 . LmjF.10.0480 583 NTAAGRR|GP 0.137 . LmjF.10.0480 586 AGRRGPR|AA 0.340 . ____________________________^_________________

  • Fasta :-

    >LmjF.10.0480 ATGTCCGTGGACAGCAGCAGCACGCACCGGCGCCGCTGCGTCGCCGCGCGCCTGGTGCGC CTCGCGGCTGCCGGCGCCGCAGTCACCGTTGCTGTCGGCACCGCGGCCGCGTGGGCACAC GCCGGTGCGCTGCAGCACCGCTGCGTCCACGACGCGATGCAGGCACGCGTGCGGCAGTCG GTGGCGGACCACCACAAGGCCCCCGGCGCGGTGTCCGCGGTGGGTCTGCCGTACGTTACT CTCGACGCCGCGCACACCGCGGCCGCCGCCGATCCCAGGCCGGGCAGCGCGCGCAGCGTC GTGCGCGACGTGAACTGGGGCGCGCTGCGCATCGCCGTCTCCACCGAGGACCTCACCGAC CCCGCCTACCACTGCGCTCGCGTCGGGCAGCATGTCAAAGACCACGCCGGCGCCATCGTC ACCTGCACCGCCGAGGACATCCTCACCAACGAGAAGCGCGACATCCTGGTCAAGCACCTC ATCCCGCAGGCGGTGCAGCTGCACACGGAGCGGCTGAAGGTGCAGCAGGTGCAGGGCAAG TGGAAGGTGACGGACATGGTCGGCGAGATCTGTGGCGACTTCAAGGTGCCGCAGGCGCAC ATCACCGAGGGCTTCAGCAACACCGACTTCGTGATGTACGTCGCCTCCGTGCCGAGTGAG GAGGGTGTGCTGGCGTGGGCCACGACCTGCCAGACGTTCTCTGACGGCCATCCAGCCGTG GGCGTCATCAACATCCCCGCGGCGAACATTGCGTCGCGGTACGACCAGCTCGTCACGCGT GTCGTCACGCACGAGATGGCGCACGCGCTCGGCTTCAGCGGCCCATTCTTCGAGGACGCC CGCATCGTGGCGAGCGTTCCGAACGTTCGAGGCAAGAACTTCGATGTTCCCGTGATCAAC AGCAGCACGGCAGTGGCGAAGGCGCGCGAGCAGTACGGCTGCGACACTTTGGAGTATCTG GAGATGGAGGACCAAGGCAGTGCGGGCTCCGCCGGGTCGCACATCAAGATGCGCAACGCG CAGGACGAGCTCATGGCGGCAGCCAGTGGTGCCGGGTACTACACCGCCCTGACCATGGCC ATCCTCCAGGACCTCGGCTTCTACCAGGCGGACTTCAGCAAGGCCGAGGTGATGCCGTGG GGCCAGAACGCCGGCTGCGCCTTCCTCACCAACAAGTGCATGGAGCAGAACATCACGCAG TGGCCGGCGATGTTCTGCAATGAGAGCGAGGACGCCATCCGCTGCCCCACCAGTCGTCTC AGCCTCGGTGCATGCGGTGTTACCCGTCACCCGGGCCTTCCGCCGTACTGGCAGTACTTC ACGGACCCGTCCCTCGCCGGCGTCTCCGCCTTCATGGACTACTGCCCTGTCGTGGTGCCC TACAGTGATATCAGCTGCACGCAGCGTGCCTCTGAGGCACATGCTTCGTTGCTGCCCTTC AACGTCTTCTCTGACGCGGCGCGCTGCATCGATGGTGCCTTCAGACCGAAGGCAACTAAC GGCATAGTCAAGTCGTACGCCGGCCTGTGCGCCAACGTGCAGTGTGACACGGCCACACGC ACGTACAGCGTGCAGGTGCACGGCAGTAACGACTACACCAACTGCACGCCGGGCCTCAGA GTTGAGCTGAGCACCGTGAGCAACGCCTTCGAGGGGGGCGGCTACATCACGTGCCCGCCG TACGTGGAGGTGTGCCAGGGCAACGTGCAGGCTGCCAAGGACGGCGGCAACACGGCGGCT GGTCGTCGTGGTCCGCGCGCCGCGGCGACGGCGCTGCTGGTGGCCGCGCTGCTGGCCGTG GCGCTCTAG
  • Download Fasta

  • Fasta :-

    MSVDSSSTHRRRCVAARLVRLAAAGAAVTVAVGTAAAWAHAGALQHRCVHDAMQARVRQS VADHHKAPGAVSAVGLPYVTLDAAHTAAAADPRPGSARSVVRDVNWGALRIAVSTEDLTD PAYHCARVGQHVKDHAGAIVTCTAEDILTNEKRDILVKHLIPQAVQLHTERLKVQQVQGK WKVTDMVGEICGDFKVPQAHITEGFSNTDFVMYVASVPSEEGVLAWATTCQTFSDGHPAV GVINIPAANIASRYDQLVTRVVTHEMAHALGFSGPFFEDARIVASVPNVRGKNFDVPVIN SSTAVAKAREQYGCDTLEYLEMEDQGSAGSAGSHIKMRNAQDELMAAASGAGYYTALTMA ILQDLGFYQADFSKAEVMPWGQNAGCAFLTNKCMEQNITQWPAMFCNESEDAIRCPTSRL SLGACGVTRHPGLPPYWQYFTDPSLAGVSAFMDYCPVVVPYSDISCTQRASEAHASLLPF NVFSDAARCIDGAFRPKATNGIVKSYAGLCANVQCDTATRTYSVQVHGSNDYTNCTPGLR VELSTVSNAFEGGGYITCPPYVEVCQGNVQAAKDGGNTAAGRRGPRAAATALLVAALLAV AL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.10.048060 SRVRQSVADH0.996unspLmjF.10.0480114 SRIAVSTEDL0.994unsp

LmjF.10.0480      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India