LmjF.11.0630 | metallo-peptidase, Clan MF, Family M17

_IDPredictionOTHERSPmTPCS_Position
LmjF.11.0630OTHER0.9994530.0001910.000355
No Results

  • Fasta :-

    >LmjF.11.0630 MSAMKRPRSNSIVEETAVSAYVQTCTNFKSNVTFTDISKVSCVAPHVLLVGALEQLRDNS LKSVLFYCPAVAEALQRVKAGSTVKTLAEVPGRKGYTEVMVTALPATTSRTNCPYRADSM SEAVAAACGSVEEGEVLDVYVCAPAGSETAVANAVARAAPHSYTAKAGQATKAYMKQAMS LNVVMSSRAAFTQELVRGKSVCVAELEAICTSVQLCQRLVDTPPCMLDTVVYAEIAAAYA AELGVDMTVIKGDELREKGYGGIYAVGKCAQYPAHLVTLRYRNPNAAEGAKNIAMVGKGI VYDCGGLALKPAAHMTNMKTDMGGSAGVFCAFIAVVRSMKMQRTHFSHIANISVTLCLAE NAIGPHSYRNDDVVVMKSGKSVEVMNTDAEGRIVLGDGVYYATGEQDFVPDVLIDMATLT GAQGVATGSKHAGVYASDAEAEKDMISAGLQSGDLCYPVLYCPEYHEEVYKSPCADMRNI ANSSSSAGSSCGGYFVEQHLSERFRGPFVHVDMAYPTSNTAGATGYGVTLVFEFLRQH
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/67 Sequence name : 67 Sequence length : 538 VALUES OF COMPUTED PARAMETERS Coef20 : 4.493 CoefTot : 0.247 ChDiff : -7 ZoneTo : 13 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.418 1.653 0.277 0.600 MesoH : -0.035 0.668 -0.211 0.254 MuHd_075 : 27.188 21.571 9.270 5.943 MuHd_095 : 10.017 5.812 2.190 1.066 MuHd_100 : 0.796 0.909 0.870 1.407 MuHd_105 : 9.818 2.421 2.861 2.366 Hmax_075 : 8.500 13.900 0.733 2.980 Hmax_095 : 3.762 5.425 -1.069 1.619 Hmax_100 : 2.700 4.400 -1.489 1.230 Hmax_105 : 3.200 3.900 -1.608 2.200 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6902 0.3098 DFMC : 0.5399 0.4601
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 538 LmjF.11.0630 MSAMKRPRSNSIVEETAVSAYVQTCTNFKSNVTFTDISKVSCVAPHVLLVGALEQLRDNSLKSVLFYCPAVAEALQRVKA 80 GSTVKTLAEVPGRKGYTEVMVTALPATTSRTNCPYRADSMSEAVAAACGSVEEGEVLDVYVCAPAGSETAVANAVARAAP 160 HSYTAKAGQATKAYMKQAMSLNVVMSSRAAFTQELVRGKSVCVAELEAICTSVQLCQRLVDTPPCMLDTVVYAEIAAAYA 240 AELGVDMTVIKGDELREKGYGGIYAVGKCAQYPAHLVTLRYRNPNAAEGAKNIAMVGKGIVYDCGGLALKPAAHMTNMKT 320 DMGGSAGVFCAFIAVVRSMKMQRTHFSHIANISVTLCLAENAIGPHSYRNDDVVVMKSGKSVEVMNTDAEGRIVLGDGVY 400 YATGEQDFVPDVLIDMATLTGAQGVATGSKHAGVYASDAEAEKDMISAGLQSGDLCYPVLYCPEYHEEVYKSPCADMRNI 480 ANSSSSAGSSCGGYFVEQHLSERFRGPFVHVDMAYPTSNTAGATGYGVTLVFEFLRQH 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .......................................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.11.0630 5 --MSAMK|RP 0.054 . LmjF.11.0630 6 -MSAMKR|PR 0.216 . LmjF.11.0630 8 SAMKRPR|SN 0.327 . LmjF.11.0630 29 QTCTNFK|SN 0.072 . LmjF.11.0630 39 TFTDISK|VS 0.058 . LmjF.11.0630 57 GALEQLR|DN 0.080 . LmjF.11.0630 62 LRDNSLK|SV 0.114 . LmjF.11.0630 77 VAEALQR|VK 0.072 . LmjF.11.0630 79 EALQRVK|AG 0.061 . LmjF.11.0630 85 KAGSTVK|TL 0.061 . LmjF.11.0630 93 LAEVPGR|KG 0.089 . LmjF.11.0630 94 AEVPGRK|GY 0.090 . LmjF.11.0630 110 LPATTSR|TN 0.107 . LmjF.11.0630 116 RTNCPYR|AD 0.155 . LmjF.11.0630 157 VANAVAR|AA 0.152 . LmjF.11.0630 166 PHSYTAK|AG 0.075 . LmjF.11.0630 172 KAGQATK|AY 0.071 . LmjF.11.0630 176 ATKAYMK|QA 0.064 . LmjF.11.0630 188 NVVMSSR|AA 0.133 . LmjF.11.0630 197 FTQELVR|GK 0.085 . LmjF.11.0630 199 QELVRGK|SV 0.114 . LmjF.11.0630 218 SVQLCQR|LV 0.108 . LmjF.11.0630 251 VDMTVIK|GD 0.069 . LmjF.11.0630 256 IKGDELR|EK 0.114 . LmjF.11.0630 258 GDELREK|GY 0.084 . LmjF.11.0630 268 GIYAVGK|CA 0.069 . LmjF.11.0630 280 AHLVTLR|YR 0.076 . LmjF.11.0630 282 LVTLRYR|NP 0.091 . LmjF.11.0630 291 NAAEGAK|NI 0.073 . LmjF.11.0630 298 NIAMVGK|GI 0.075 . LmjF.11.0630 310 CGGLALK|PA 0.063 . LmjF.11.0630 319 AHMTNMK|TD 0.064 . LmjF.11.0630 337 AFIAVVR|SM 0.120 . LmjF.11.0630 340 AVVRSMK|MQ 0.138 . LmjF.11.0630 343 RSMKMQR|TH 0.094 . LmjF.11.0630 369 IGPHSYR|ND 0.097 . LmjF.11.0630 377 DDVVVMK|SG 0.089 . LmjF.11.0630 380 VVMKSGK|SV 0.130 . LmjF.11.0630 392 NTDAEGR|IV 0.090 . LmjF.11.0630 430 GVATGSK|HA 0.077 . LmjF.11.0630 443 SDAEAEK|DM 0.073 . LmjF.11.0630 471 YHEEVYK|SP 0.082 . LmjF.11.0630 478 SPCADMR|NI 0.104 . LmjF.11.0630 503 EQHLSER|FR 0.105 . LmjF.11.0630 505 HLSERFR|GP 0.136 . LmjF.11.0630 536 LVFEFLR|QH 0.080 . ____________________________^_________________

  • Fasta :-

    >LmjF.11.0630 ATGTCCGCGATGAAGCGCCCGCGTTCCAACTCGATCGTGGAGGAGACGGCTGTGTCGGCG TACGTGCAGACGTGCACGAACTTCAAGTCGAATGTGACGTTCACGGACATCTCGAAGGTA TCATGTGTTGCGCCGCACGTGCTTCTGGTGGGCGCGCTGGAGCAGCTGCGCGATAACTCT CTCAAGTCCGTGCTGTTCTACTGCCCGGCTGTCGCGGAGGCGCTGCAGCGCGTGAAGGCT GGTTCTACGGTGAAGACGCTTGCGGAGGTTCCGGGGCGCAAGGGCTACACGGAAGTGATG GTGACGGCGCTGCCGGCAACCACGTCGCGCACAAACTGCCCTTACCGCGCAGACAGCATG TCGGAGGCCGTCGCTGCTGCGTGCGGGAGCGTCGAAGAAGGCGAGGTGCTTGACGTGTAC GTGTGCGCCCCTGCTGGCTCCGAGACGGCGGTCGCGAACGCTGTTGCGCGCGCTGCGCCG CACTCGTACACCGCGAAGGCTGGGCAGGCGACGAAGGCGTACATGAAGCAGGCAATGTCG TTGAACGTCGTGATGTCGTCACGCGCTGCGTTCACACAGGAGCTGGTGCGTGGAAAGTCC GTGTGCGTGGCGGAGCTGGAGGCGATCTGCACGTCTGTGCAGCTGTGCCAGCGCCTGGTG GACACGCCGCCGTGCATGCTGGACACTGTCGTGTACGCTGAGATCGCTGCTGCTTACGCC GCTGAGCTCGGTGTGGATATGACTGTGATCAAGGGTGATGAGCTGCGCGAGAAGGGCTAC GGCGGCATCTACGCTGTCGGCAAGTGTGCGCAGTACCCGGCGCACCTGGTGACGCTGCGC TACAGGAACCCGAACGCCGCTGAGGGCGCCAAGAACATTGCGATGGTTGGCAAGGGTATT GTGTACGACTGCGGCGGTCTTGCGCTGAAGCCCGCGGCGCACATGACGAACATGAAGACG GATATGGGCGGCTCGGCTGGCGTGTTCTGCGCCTTCATCGCGGTGGTGCGCAGCATGAAG ATGCAGAGGACCCACTTCAGCCACATCGCCAACATCAGCGTGACGCTGTGCTTGGCGGAG AACGCGATCGGCCCCCACTCGTACCGCAACGACGACGTTGTGGTGATGAAGTCGGGCAAG TCGGTGGAGGTGATGAACACGGATGCGGAGGGCCGCATCGTGCTGGGCGACGGCGTGTAC TACGCGACGGGCGAGCAGGACTTCGTCCCGGATGTGCTGATCGACATGGCGACGCTGACG GGTGCGCAAGGTGTGGCGACGGGCTCGAAGCACGCCGGCGTTTACGCCAGCGATGCCGAG GCGGAGAAGGACATGATCAGTGCGGGCCTGCAGTCCGGCGACCTGTGCTACCCAGTGCTG TACTGCCCCGAGTACCACGAGGAGGTGTACAAGAGCCCTTGCGCTGACATGCGCAACATT GCAAACTCGTCATCCAGCGCCGGCTCGAGCTGCGGCGGGTACTTTGTCGAGCAGCACCTG AGCGAGCGCTTCAGGGGCCCCTTCGTGCACGTTGATATGGCCTACCCCACCTCGAACACG GCTGGCGCCACCGGCTACGGTGTTACTCTCGTGTTCGAGTTTCTGCGCCAGCACTAG
  • Download Fasta

  • Fasta :-

    MSAMKRPRSNSIVEETAVSAYVQTCTNFKSNVTFTDISKVSCVAPHVLLVGALEQLRDNS LKSVLFYCPAVAEALQRVKAGSTVKTLAEVPGRKGYTEVMVTALPATTSRTNCPYRADSM SEAVAAACGSVEEGEVLDVYVCAPAGSETAVANAVARAAPHSYTAKAGQATKAYMKQAMS LNVVMSSRAAFTQELVRGKSVCVAELEAICTSVQLCQRLVDTPPCMLDTVVYAEIAAAYA AELGVDMTVIKGDELREKGYGGIYAVGKCAQYPAHLVTLRYRNPNAAEGAKNIAMVGKGI VYDCGGLALKPAAHMTNMKTDMGGSAGVFCAFIAVVRSMKMQRTHFSHIANISVTLCLAE NAIGPHSYRNDDVVVMKSGKSVEVMNTDAEGRIVLGDGVYYATGEQDFVPDVLIDMATLT GAQGVATGSKHAGVYASDAEAEKDMISAGLQSGDLCYPVLYCPEYHEEVYKSPCADMRNI ANSSSSAGSSCGGYFVEQHLSERFRGPFVHVDMAYPTSNTAGATGYGVTLVFEFLRQH

  • title: Substrate-binding/catalytic site
  • coordinates: K298,D303,K310,D321,D388,E390,R392,L419
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.11.0630338 SAVVRSMKMQ0.994unspLmjF.11.0630338 SAVVRSMKMQ0.994unspLmjF.11.0630338 SAVVRSMKMQ0.994unspLmjF.11.0630367 SIGPHSYRND0.996unspLmjF.11.063011 SPRSNSIVEE0.996unspLmjF.11.0630119 SYRADSMSEA0.998unsp

LmjF.11.0630      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India