LmjF.11.0720 | PUF nine target 1

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0020023      

  • Curated_GO_Components:  kinetoplast      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.11.0720OTHER0.5979600.3974470.004593
No Results

  • Fasta :-

    >LmjF.11.0720 MPPKRYPNRLLVLCASINDVTAWPFWKFLQMKKIRGVTDMALLAFNSDGGSFEARIDGDK YQLKNYAKVRGYQHDMFESFVHRWHDPGRSYFVYGGHGMGDYVELEQNRVSLQVHELADV FGTRVFEAVLFDACFMANIDCAYHLRHNTRYIGACEGYMWEPDTALDYHVFNTHNASAMS RFKDPLHILRVIQTDYCSKAPRGDFTIIDTTHIAALRQYVQEHVMQRVYDRATFYSLPQR ERLQQIAEASIQASISQFGHPGGDTNVINGVGSGTDRPRTAPSSPEVLALSAAGRPTRRQ RMLQAIQFEHSLYPSEVDDKQLLDLKSYLTDMLHEEQQLKAWEAAALGPQRRIAAGRRRV RSDALQHGGSSGIAAPSTASSSFAVWKAPPSRALFADRHGRPPAASSAECSPSINGGPAA AHDTQKGATALSPPVLATTPTKAAPPPPSLSTSYKGSAQEGLDLFYQVVVSHIPPKAASI YATQLGGLSFTVHEYSAMSRPAEPWLVGSKRLLKRRAKQFLKNGELSEVVMESPKASASV TSAALVAAVDKVTATAAAVTGASAGKPEPATSAAALPLSPRAHMPSTDQRLRFTSSGNGT DSDSSLSLSLSVPLSTSSTDAYNNSMKTVILDSPQRAASYTSLPNSKERTSAC
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/393 Sequence name : 393 Sequence length : 653 VALUES OF COMPUTED PARAMETERS Coef20 : 3.924 CoefTot : -1.245 ChDiff : 9 ZoneTo : 38 KR : 7 DE : 1 CleavSite : 37 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.371 1.541 0.133 0.556 MesoH : 0.093 0.258 -0.262 0.237 MuHd_075 : 43.229 18.678 9.758 8.463 MuHd_095 : 29.201 23.121 10.069 5.902 MuHd_100 : 34.244 17.630 9.759 6.769 MuHd_105 : 37.039 20.166 10.083 7.665 Hmax_075 : 11.783 13.417 2.017 4.667 Hmax_095 : 17.238 17.150 3.800 6.274 Hmax_100 : 13.800 15.500 4.275 5.370 Hmax_105 : 14.300 16.567 4.210 2.630 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3205 0.6795 DFMC : 0.3731 0.6269 This protein is probably imported in mitochondria. f(Ser) = 0.0263 f(Arg) = 0.0789 CMi = 0.14577 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 653 LmjF.11.0720 MPPKRYPNRLLVLCASINDVTAWPFWKFLQMKKIRGVTDMALLAFNSDGGSFEARIDGDKYQLKNYAKVRGYQHDMFESF 80 VHRWHDPGRSYFVYGGHGMGDYVELEQNRVSLQVHELADVFGTRVFEAVLFDACFMANIDCAYHLRHNTRYIGACEGYMW 160 EPDTALDYHVFNTHNASAMSRFKDPLHILRVIQTDYCSKAPRGDFTIIDTTHIAALRQYVQEHVMQRVYDRATFYSLPQR 240 ERLQQIAEASIQASISQFGHPGGDTNVINGVGSGTDRPRTAPSSPEVLALSAAGRPTRRQRMLQAIQFEHSLYPSEVDDK 320 QLLDLKSYLTDMLHEEQQLKAWEAAALGPQRRIAAGRRRVRSDALQHGGSSGIAAPSTASSSFAVWKAPPSRALFADRHG 400 RPPAASSAECSPSINGGPAAAHDTQKGATALSPPVLATTPTKAAPPPPSLSTSYKGSAQEGLDLFYQVVVSHIPPKAASI 480 YATQLGGLSFTVHEYSAMSRPAEPWLVGSKRLLKRRAKQFLKNGELSEVVMESPKASASVTSAALVAAVDKVTATAAAVT 560 GASAGKPEPATSAAALPLSPRAHMPSTDQRLRFTSSGNGTDSDSSLSLSLSVPLSTSSTDAYNNSMKTVILDSPQRAASY 640 TSLPNSKERTSAC 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.11.0720 4 ---MPPK|RY 0.058 . LmjF.11.0720 5 --MPPKR|YP 0.167 . LmjF.11.0720 9 PKRYPNR|LL 0.079 . LmjF.11.0720 27 TAWPFWK|FL 0.071 . LmjF.11.0720 32 WKFLQMK|KI 0.085 . LmjF.11.0720 33 KFLQMKK|IR 0.085 . LmjF.11.0720 35 LQMKKIR|GV 0.177 . LmjF.11.0720 55 GGSFEAR|ID 0.160 . LmjF.11.0720 60 ARIDGDK|YQ 0.059 . LmjF.11.0720 64 GDKYQLK|NY 0.071 . LmjF.11.0720 68 QLKNYAK|VR 0.072 . LmjF.11.0720 70 KNYAKVR|GY 0.114 . LmjF.11.0720 83 FESFVHR|WH 0.145 . LmjF.11.0720 89 RWHDPGR|SY 0.208 . LmjF.11.0720 109 VELEQNR|VS 0.069 . LmjF.11.0720 124 ADVFGTR|VF 0.111 . LmjF.11.0720 146 DCAYHLR|HN 0.097 . LmjF.11.0720 150 HLRHNTR|YI 0.245 . LmjF.11.0720 181 NASAMSR|FK 0.115 . LmjF.11.0720 183 SAMSRFK|DP 0.076 . LmjF.11.0720 190 DPLHILR|VI 0.076 . LmjF.11.0720 199 QTDYCSK|AP 0.057 . LmjF.11.0720 202 YCSKAPR|GD 0.166 . LmjF.11.0720 217 THIAALR|QY 0.091 . LmjF.11.0720 227 QEHVMQR|VY 0.104 . LmjF.11.0720 231 MQRVYDR|AT 0.141 . LmjF.11.0720 240 FYSLPQR|ER 0.084 . LmjF.11.0720 242 SLPQRER|LQ 0.090 . LmjF.11.0720 277 VGSGTDR|PR 0.075 . LmjF.11.0720 279 SGTDRPR|TA 0.093 . LmjF.11.0720 295 ALSAAGR|PT 0.127 . LmjF.11.0720 298 AAGRPTR|RQ 0.181 . LmjF.11.0720 299 AGRPTRR|QR 0.116 . LmjF.11.0720 301 RPTRRQR|ML 0.437 . LmjF.11.0720 320 PSEVDDK|QL 0.059 . LmjF.11.0720 326 KQLLDLK|SY 0.063 . LmjF.11.0720 340 HEEQQLK|AW 0.071 . LmjF.11.0720 351 AALGPQR|RI 0.092 . LmjF.11.0720 352 ALGPQRR|IA 0.167 . LmjF.11.0720 357 RRIAAGR|RR 0.083 . LmjF.11.0720 358 RIAAGRR|RV 0.147 . LmjF.11.0720 359 IAAGRRR|VR 0.182 . LmjF.11.0720 361 AGRRRVR|SD 0.342 . LmjF.11.0720 387 SSFAVWK|AP 0.061 . LmjF.11.0720 392 WKAPPSR|AL 0.121 . LmjF.11.0720 398 RALFADR|HG 0.080 . LmjF.11.0720 401 FADRHGR|PP 0.177 . LmjF.11.0720 426 AAHDTQK|GA 0.085 . LmjF.11.0720 442 LATTPTK|AA 0.063 . LmjF.11.0720 455 SLSTSYK|GS 0.113 . LmjF.11.0720 476 VSHIPPK|AA 0.098 . LmjF.11.0720 500 EYSAMSR|PA 0.138 . LmjF.11.0720 510 PWLVGSK|RL 0.051 . LmjF.11.0720 511 WLVGSKR|LL 0.176 . LmjF.11.0720 514 GSKRLLK|RR 0.092 . LmjF.11.0720 515 SKRLLKR|RA 0.272 . LmjF.11.0720 516 KRLLKRR|AK 0.139 . LmjF.11.0720 518 LLKRRAK|QF 0.141 . LmjF.11.0720 522 RAKQFLK|NG 0.063 . LmjF.11.0720 535 VVMESPK|AS 0.062 . LmjF.11.0720 551 LVAAVDK|VT 0.064 . LmjF.11.0720 566 TGASAGK|PE 0.059 . LmjF.11.0720 581 ALPLSPR|AH 0.095 . LmjF.11.0720 590 MPSTDQR|LR 0.100 . LmjF.11.0720 592 STDQRLR|FT 0.120 . LmjF.11.0720 627 AYNNSMK|TV 0.074 . LmjF.11.0720 636 ILDSPQR|AA 0.077 . LmjF.11.0720 647 TSLPNSK|ER 0.057 . LmjF.11.0720 649 LPNSKER|TS 0.107 . ____________________________^_________________

  • Fasta :-

    >LmjF.11.0720 ATGCCCCCAAAGCGCTACCCCAACCGCCTCTTGGTGCTGTGCGCCTCCATCAACGATGTC ACAGCATGGCCGTTTTGGAAGTTCTTGCAGATGAAGAAGATTCGCGGCGTGACGGACATG GCGCTGCTCGCCTTCAACAGCGACGGCGGCAGCTTCGAGGCTCGCATTGACGGCGACAAA TACCAGCTCAAGAACTATGCCAAGGTTCGCGGCTACCAGCATGACATGTTTGAGAGCTTC GTGCATCGCTGGCACGATCCGGGCCGAAGCTATTTTGTGTATGGCGGGCATGGCATGGGT GACTATGTGGAGCTAGAACAGAACCGTGTCTCGCTGCAGGTGCACGAGCTCGCCGACGTC TTCGGCACGCGTGTCTTCGAAGCAGTGCTCTTTGACGCCTGCTTCATGGCGAACATCGAC TGCGCCTATCATCTGCGCCACAACACGCGGTACATCGGTGCCTGCGAGGGGTACATGTGG GAGCCTGACACGGCCCTCGACTACCATGTCTTCAACACCCACAACGCGAGCGCCATGAGC CGCTTCAAAGACCCGCTGCACATCCTCCGTGTTATTCAGACGGACTACTGCAGCAAGGCG CCACGTGGCGACTTCACCATCATCGACACCACGCACATCGCGGCGCTGCGGCAGTACGTG CAGGAGCACGTCATGCAGCGTGTTTATGACCGGGCGACCTTCTACAGCTTACCGCAGCGA GAGCGACTGCAGCAAATCGCCGAGGCGTCGATTCAGGCGTCGATATCTCAGTTTGGCCAC CCCGGCGGTGACACCAACGTGATTAATGGCGTTGGCAGTGGCACTGACCGCCCGCGCACC GCCCCATCGTCACCCGAGGTGCTTGCACTTTCCGCCGCCGGCAGACCGACGCGGCGGCAG CGAATGCTGCAGGCGATTCAGTTTGAGCACTCGCTGTACCCGTCGGAGGTCGACGACAAG CAGCTGCTCGACCTCAAGTCGTATCTCACTGACATGCTGCACGAGGAGCAGCAGCTAAAG GCGTGGGAGGCAGCGGCGCTGGGGCCGCAGCGCCGCATTGCGGCGGGTCGCCGCCGCGTG CGAAGTGATGCACTGCAGCATGGTGGCAGCTCCGGCATCGCCGCCCCCTCCACCGCCTCG TCCTCCTTCGCCGTCTGGAAGGCGCCGCCGTCGCGGGCGCTGTTTGCTGATCGGCACGGG CGGCCGCCTGCTGCCAGTTCTGCAGAGTGCTCGCCGTCCATCAACGGTGGCCCAGCCGCA GCACACGACACGCAGAAGGGGGCGACGGCGCTCTCTCCTCCAGTCCTTGCGACCACTCCA ACGAAGGCAGCACCGCCGCCTCCGTCTCTCTCCACCTCTTACAAGGGCAGCGCGCAGGAG GGGCTAGATCTTTTCTACCAGGTTGTCGTGAGCCACATCCCACCGAAGGCCGCTTCCATC TACGCGACCCAGCTCGGGGGGTTATCCTTTACGGTGCACGAGTACAGTGCCATGTCGCGG CCGGCAGAGCCGTGGTTGGTGGGCTCGAAGAGGTTGCTGAAGCGCCGGGCAAAGCAATTC CTGAAGAACGGCGAACTCTCGGAGGTGGTGATGGAGTCCCCGAAGGCGAGCGCGTCCGTC ACCAGCGCTGCCCTCGTGGCAGCCGTCGACAAGGTGACAGCAACGGCGGCGGCGGTGACG GGTGCTTCTGCAGGAAAACCCGAGCCTGCGACTTCCGCCGCCGCGCTGCCGCTGTCACCC AGAGCACACATGCCCTCCACGGATCAGCGTCTGCGTTTCACGAGCAGCGGTAATGGCACA GACAGCGACAGCTCCTTGTCACTGAGCTTGTCCGTACCGCTCTCCACTTCCTCCACGGAT GCATACAACAACAGCATGAAAACGGTAATTCTCGACTCGCCACAGCGGGCTGCCTCCTAT ACATCGTTACCCAACTCCAAAGAACGTACAAGCGCCTGCTGA
  • Download Fasta

  • Fasta :-

    MPPKRYPNRLLVLCASINDVTAWPFWKFLQMKKIRGVTDMALLAFNSDGGSFEARIDGDK YQLKNYAKVRGYQHDMFESFVHRWHDPGRSYFVYGGHGMGDYVELEQNRVSLQVHELADV FGTRVFEAVLFDACFMANIDCAYHLRHNTRYIGACEGYMWEPDTALDYHVFNTHNASAMS RFKDPLHILRVIQTDYCSKAPRGDFTIIDTTHIAALRQYVQEHVMQRVYDRATFYSLPQR ERLQQIAEASIQASISQFGHPGGDTNVINGVGSGTDRPRTAPSSPEVLALSAAGRPTRRQ RMLQAIQFEHSLYPSEVDDKQLLDLKSYLTDMLHEEQQLKAWEAAALGPQRRIAAGRRRV RSDALQHGGSSGIAAPSTASSSFAVWKAPPSRALFADRHGRPPAASSAECSPSINGGPAA AHDTQKGATALSPPVLATTPTKAAPPPPSLSTSYKGSAQEGLDLFYQVVVSHIPPKAASI YATQLGGLSFTVHEYSAMSRPAEPWLVGSKRLLKRRAKQFLKNGELSEVVMESPKASASV TSAALVAAVDKVTATAAAVTGASAGKPEPATSAAALPLSPRAHMPSTDQRLRFTSSGNGT DSDSSLSLSLSVPLSTSSTDAYNNSMKTVILDSPQRAASYTSLPNSKERTSAC

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.11.0720453 SSLSTSYKGS0.994unspLmjF.11.0720453 SSLSTSYKGS0.994unspLmjF.11.0720453 SSLSTSYKGS0.994unspLmjF.11.0720533 SVVMESPKAS0.993unspLmjF.11.0720639 SQRAASYTSL0.994unspLmjF.11.0720646 SSLPNSKERT0.997unspLmjF.11.0720273 SNGVGSGTDR0.991unspLmjF.11.0720284 STAPSSPEVL0.996unsp

LmjF.11.0720      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India