LmjF.12.0240 | hypothetical protein, unknown function

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

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  • Curated_GO_Function_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
LmjF.12.0240OTHER0.4327020.3836860.183612
No Results

  • Fasta :-

    >LmjF.12.0240 MVYRTLVASMAPTRHCAASVAPMCLADRMKQRCRCRLSPLLMCAVLFAQLLLCSTSLPVA ADPTIMPLLNITSTDKADPDEYYKILLSQDATILAGSTTALSSDGVAYPNLNTVKGLRSV FQVPGAPTVQRAPKRTSTALKAFRADVLSELLVAMALLYLDSTDALPFTRTAPIPSTYLP ASYTGGASFVNPSFPTVPITLNMLLQHVSSLTKKGLDLRAETAPSGTVPTLSDFVSSLFS TAATTVFSASQPGLSTSYTYSHANVAIVAYVVEQVLATSTNYSALSGIGEFVFTVVMPPL QLSNTFLLNRNGHVIDATYPLRSGSSHYTVNYAARQVLDNRSTDILDSAPMDALYFSDYM LFTTGADVAKLVAEVLVPGGLYHTRLGASMLQNMVPIAVPTMRYTEARTTGLFLFSANKL CSTMYAAISYSGHAPYCRYSSATVSESAPPFGLVATSGTDELAIVCIPVVSNTKTFCSIA GLSFSGTGCSRCNAAAAGDRAVGLAMVSLAHLTSEPMPAPTSQSTAHTFNGWFVVLGVAV TLVVVVVASYITDYLIQPPPPAKIIAPVVASQMGLRSGTALNLPVGGDGAVGSSEVPVDS ESPETFRKNGRDHDAEDRYSGADNEEQTPHLTRSGGPARGSSSLRRRRPRRRRHRDNGEQ NPASDGSYSSADDGWGENLDSVDRASTGSQRPNPKGALRFDAYI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/891 Sequence name : 891 Sequence length : 704 VALUES OF COMPUTED PARAMETERS Coef20 : 4.810 CoefTot : 1.931 ChDiff : 1 ZoneTo : 61 KR : 7 DE : 1 CleavSite : 38 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.353 2.935 0.509 0.928 MesoH : 0.840 0.971 0.004 0.447 MuHd_075 : 31.983 23.051 9.017 8.659 MuHd_095 : 26.355 21.919 6.994 6.445 MuHd_100 : 24.055 16.463 6.950 5.310 MuHd_105 : 27.773 14.698 6.998 4.928 Hmax_075 : 14.350 16.700 4.301 4.950 Hmax_095 : 8.225 15.313 4.627 3.894 Hmax_100 : 14.200 13.700 3.351 3.350 Hmax_105 : 7.800 15.800 4.048 7.257 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4584 0.5416 DFMC : 0.2891 0.7109 This protein is probably imported in mitochondria. f(Ser) = 0.0820 f(Arg) = 0.0984 CMi = 0.39463 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 704 LmjF.12.0240 MVYRTLVASMAPTRHCAASVAPMCLADRMKQRCRCRLSPLLMCAVLFAQLLLCSTSLPVAADPTIMPLLNITSTDKADPD 80 EYYKILLSQDATILAGSTTALSSDGVAYPNLNTVKGLRSVFQVPGAPTVQRAPKRTSTALKAFRADVLSELLVAMALLYL 160 DSTDALPFTRTAPIPSTYLPASYTGGASFVNPSFPTVPITLNMLLQHVSSLTKKGLDLRAETAPSGTVPTLSDFVSSLFS 240 TAATTVFSASQPGLSTSYTYSHANVAIVAYVVEQVLATSTNYSALSGIGEFVFTVVMPPLQLSNTFLLNRNGHVIDATYP 320 LRSGSSHYTVNYAARQVLDNRSTDILDSAPMDALYFSDYMLFTTGADVAKLVAEVLVPGGLYHTRLGASMLQNMVPIAVP 400 TMRYTEARTTGLFLFSANKLCSTMYAAISYSGHAPYCRYSSATVSESAPPFGLVATSGTDELAIVCIPVVSNTKTFCSIA 480 GLSFSGTGCSRCNAAAAGDRAVGLAMVSLAHLTSEPMPAPTSQSTAHTFNGWFVVLGVAVTLVVVVVASYITDYLIQPPP 560 PAKIIAPVVASQMGLRSGTALNLPVGGDGAVGSSEVPVDSESPETFRKNGRDHDAEDRYSGADNEEQTPHLTRSGGPARG 640 SSSLRRRRPRRRRHRDNGEQNPASDGSYSSADDGWGENLDSVDRASTGSQRPNPKGALRFDAYI 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............P.P................................................. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LmjF.12.0240 4 ---MVYR|TL 0.099 . LmjF.12.0240 14 ASMAPTR|HC 0.094 . LmjF.12.0240 28 PMCLADR|MK 0.073 . LmjF.12.0240 30 CLADRMK|QR 0.067 . LmjF.12.0240 32 ADRMKQR|CR 0.093 . LmjF.12.0240 34 RMKQRCR|CR 0.075 . LmjF.12.0240 36 KQRCRCR|LS 0.077 . LmjF.12.0240 76 NITSTDK|AD 0.055 . LmjF.12.0240 84 DPDEYYK|IL 0.059 . LmjF.12.0240 115 PNLNTVK|GL 0.070 . LmjF.12.0240 118 NTVKGLR|SV 0.210 . LmjF.12.0240 131 GAPTVQR|AP 0.080 . LmjF.12.0240 134 TVQRAPK|RT 0.253 . LmjF.12.0240 135 VQRAPKR|TS 0.166 . LmjF.12.0240 141 RTSTALK|AF 0.077 . LmjF.12.0240 144 TALKAFR|AD 0.084 . LmjF.12.0240 170 DALPFTR|TA 0.071 . LmjF.12.0240 213 HVSSLTK|KG 0.058 . LmjF.12.0240 214 VSSLTKK|GL 0.126 . LmjF.12.0240 219 KKGLDLR|AE 0.075 . LmjF.12.0240 310 NTFLLNR|NG 0.076 . LmjF.12.0240 322 DATYPLR|SG 0.093 . LmjF.12.0240 335 TVNYAAR|QV 0.204 . LmjF.12.0240 341 RQVLDNR|ST 0.119 . LmjF.12.0240 370 TGADVAK|LV 0.096 . LmjF.12.0240 385 GGLYHTR|LG 0.085 . LmjF.12.0240 403 IAVPTMR|YT 0.141 . LmjF.12.0240 408 MRYTEAR|TT 0.165 . LmjF.12.0240 419 FLFSANK|LC 0.058 . LmjF.12.0240 438 GHAPYCR|YS 0.117 . LmjF.12.0240 474 PVVSNTK|TF 0.055 . LmjF.12.0240 491 SGTGCSR|CN 0.079 . LmjF.12.0240 500 AAAAGDR|AV 0.136 . LmjF.12.0240 563 QPPPPAK|II 0.075 . LmjF.12.0240 576 ASQMGLR|SG 0.099 . LmjF.12.0240 607 ESPETFR|KN 0.086 . LmjF.12.0240 608 SPETFRK|NG 0.082 . LmjF.12.0240 611 TFRKNGR|DH 0.147 . LmjF.12.0240 618 DHDAEDR|YS 0.090 . LmjF.12.0240 633 QTPHLTR|SG 0.179 . LmjF.12.0240 639 RSGGPAR|GS 0.122 . LmjF.12.0240 645 RGSSSLR|RR 0.087 . LmjF.12.0240 646 GSSSLRR|RR 0.128 . LmjF.12.0240 647 SSSLRRR|RP 0.146 . LmjF.12.0240 648 SSLRRRR|PR 0.275 . LmjF.12.0240 650 LRRRRPR|RR 0.271 . LmjF.12.0240 651 RRRRPRR|RR 0.461 . LmjF.12.0240 652 RRRPRRR|RH 0.199 . LmjF.12.0240 653 RRPRRRR|HR 0.692 *ProP* LmjF.12.0240 655 PRRRRHR|DN 0.645 *ProP* LmjF.12.0240 684 NLDSVDR|AS 0.081 . LmjF.12.0240 691 ASTGSQR|PN 0.082 . LmjF.12.0240 695 SQRPNPK|GA 0.072 . LmjF.12.0240 699 NPKGALR|FD 0.094 . ____________________________^_________________

  • Fasta :-

    >LmjF.12.0240 ATGGTGTACCGCACCCTTGTAGCGAGCATGGCCCCCACGCGTCATTGCGCTGCGAGTGTC GCGCCGATGTGCCTCGCCGACCGCATGAAGCAACGGTGTAGGTGTCGGCTGTCGCCTCTA CTCATGTGCGCGGTGCTCTTCGCGCAGCTTCTGCTCTGTAGCACCTCCCTGCCCGTCGCG GCCGACCCGACCATCATGCCCCTCCTCAACATCACCTCCACCGACAAGGCGGACCCCGAT GAGTACTACAAGATATTGCTCTCCCAGGACGCCACTATCCTTGCGGGCAGTACCACGGCC CTCAGCAGCGACGGAGTCGCCTACCCGAACCTCAACACGGTTAAAGGGCTGCGGTCTGTC TTCCAGGTTCCTGGGGCGCCGACGGTGCAGCGCGCTCCTAAGCGGACCAGCACGGCCTTG AAGGCCTTCCGCGCCGACGTCCTGTCGGAGCTCCTCGTAGCGATGGCACTCCTCTACCTC GACTCCACCGACGCGCTGCCCTTCACACGCACGGCGCCGATCCCGTCCACGTACCTGCCA GCCTCCTACACAGGCGGCGCCAGCTTCGTCAACCCGTCGTTTCCCACCGTGCCCATCACC CTCAACATGCTGCTGCAGCACGTCTCCTCGCTCACCAAGAAAGGCCTCGACCTTCGCGCC GAAACTGCGCCGTCCGGCACTGTGCCGACCCTCTCGGACTTTGTCAGCTCCCTCTTCTCC ACCGCGGCCACAACAGTGTTCAGCGCTAGCCAGCCGGGGCTGTCTACCAGCTACACCTAC TCGCATGCCAACGTGGCGATCGTCGCCTACGTGGTGGAGCAGGTCTTGGCTACGTCGACG AACTACTCGGCGCTCTCCGGCATTGGCGAGTTCGTCTTCACCGTCGTGATGCCACCGCTG CAGCTGTCGAACACGTTTTTGCTGAACCGCAACGGTCACGTCATCGACGCGACCTACCCC TTGAGGAGCGGCAGCAGCCACTACACAGTGAATTACGCCGCCCGCCAAGTCCTTGACAAC CGCAGCACCGACATCCTGGACAGCGCTCCGATGGACGCCTTGTACTTCTCCGACTACATG CTCTTTACGACCGGCGCAGACGTGGCGAAGTTGGTGGCAGAGGTGCTCGTGCCGGGCGGC CTCTACCACACGCGACTTGGTGCCTCGATGCTCCAGAACATGGTCCCCATTGCCGTGCCT ACGATGCGCTACACGGAGGCACGCACAACCGGCCTCTTCCTGTTCAGCGCGAACAAGCTG TGCTCTACAATGTACGCCGCCATCTCCTACAGCGGCCATGCGCCGTACTGCCGCTACAGC TCCGCGACAGTGTCCGAGTCAGCGCCGCCCTTTGGGCTGGTCGCCACAAGTGGCACGGAT GAGCTCGCCATCGTGTGCATCCCCGTCGTCAGCAACACGAAGACGTTCTGCTCAATCGCT GGGCTTTCCTTCTCAGGCACAGGCTGCAGCAGGTGCAACGCGGCAGCGGCGGGGGACCGT GCCGTCGGCCTTGCCATGGTGAGCCTGGCGCACTTGACGAGTGAGCCGATGCCAGCGCCG ACGTCGCAGTCGACAGCTCACACGTTTAACGGGTGGTTCGTGGTCCTTGGGGTGGCCGTC ACACTGGTGGTCGTGGTCGTCGCCTCCTACATCACCGACTACCTCATCCAGCCGCCGCCG CCAGCGAAGATTATAGCACCCGTCGTGGCGAGCCAGATGGGCCTGCGGAGCGGCACCGCG CTGAATCTCCCCGTCGGCGGCGACGGCGCAGTCGGCAGCTCGGAAGTACCCGTTGACAGT GAGTCCCCCGAGACGTTCCGCAAGAACGGTAGAGACCATGATGCTGAGGACCGTTACAGT GGCGCAGACAACGAGGAACAGACGCCGCACCTCACGCGCAGCGGTGGCCCTGCTCGCGGC AGCTCGTCACTGCGGCGGCGTCGCCCGCGCCGGCGTCGGCACCGTGACAACGGCGAGCAG AATCCGGCCAGTGACGGCTCCTACTCCAGTGCCGACGATGGCTGGGGCGAGAACCTAGAC AGCGTAGATCGCGCCTCCACGGGGTCGCAGCGGCCGAACCCGAAAGGTGCTTTGCGCTTC GATGCCTACATATAG
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  • Fasta :-

    MVYRTLVASMAPTRHCAASVAPMCLADRMKQRCRCRLSPLLMCAVLFAQLLLCSTSLPVA ADPTIMPLLNITSTDKADPDEYYKILLSQDATILAGSTTALSSDGVAYPNLNTVKGLRSV FQVPGAPTVQRAPKRTSTALKAFRADVLSELLVAMALLYLDSTDALPFTRTAPIPSTYLP ASYTGGASFVNPSFPTVPITLNMLLQHVSSLTKKGLDLRAETAPSGTVPTLSDFVSSLFS TAATTVFSASQPGLSTSYTYSHANVAIVAYVVEQVLATSTNYSALSGIGEFVFTVVMPPL QLSNTFLLNRNGHVIDATYPLRSGSSHYTVNYAARQVLDNRSTDILDSAPMDALYFSDYM LFTTGADVAKLVAEVLVPGGLYHTRLGASMLQNMVPIAVPTMRYTEARTTGLFLFSANKL CSTMYAAISYSGHAPYCRYSSATVSESAPPFGLVATSGTDELAIVCIPVVSNTKTFCSIA GLSFSGTGCSRCNAAAAGDRAVGLAMVSLAHLTSEPMPAPTSQSTAHTFNGWFVVLGVAV TLVVVVVASYITDYLIQPPPPAKIIAPVVASQMGLRSGTALNLPVGGDGAVGSSEVPVDS ESPETFRKNGRDHDAEDRYSGADNEEQTPHLTRSGGPARGSSSLRRRRPRRRRHRDNGEQ NPASDGSYSSADDGWGENLDSVDRASTGSQRPNPKGALRFDAYI

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.12.0240620 SEDRYSGADN0.997unspLmjF.12.0240620 SEDRYSGADN0.997unspLmjF.12.0240620 SEDRYSGADN0.997unspLmjF.12.0240686 SVDRASTGSQ0.997unspLmjF.12.0240457 SLVATSGTDE0.993unspLmjF.12.0240602 SVDSESPETF0.995unsp

LmjF.12.0240      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India