LmjF.13.0680 | Metallopeptidase family M24, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005634      

  • Curated_GO_Components:  nucleus      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.13.0680OTHER0.9998840.0000040.000113
No Results

  • Fasta :-

    >LmjF.13.0680 MGRGYSASRSKSGRPTLRMKRSRSMSLHALKKNMDAHEAAKAANGVSTEASSLSSAAATE VPRKALKVVRQRRAPSSLLSSSSSATASPTPAAAKATMKAASTKVKSADGGGRTTTTSAG PRSQSAAFRRNLEDLEKQFDAAMEASEDEDETVMNTTTMTKYKECGRVVDAVLDQLAAAC VPGANTKVLCDTGDEEIVSRLKGLFVKTKGADGRRLARGISYPTNVSVNEMLCNDSPYRL EDGTILKDGDVVKLHVGCHLDGYPVSAARTVVVTTRAASAATEGEEEEAQRKRGSPAATL SSRSAVGNTIEAARVSLLAMMHALRPGTLNADITDVIAAVGQHYGVQAVEGVLSNRSKRW VPDGIDCIIARRVTSEDPHQDVADCEVGEHQVWCLDVAFTNNHNYRITLSEKPVTLFRRT PADFHADARVRQANETLQEITDTHFCFPFHFKSLENPLKGKLGIHVLEKKGMVDKLPPLR TKHGYVTARFSATVAVTAKRVTVLCGAPPTASVAMPPVMRSTVSESTLAAEVLAVLRRPY EFADVRAVVTAKDARGQSSPATKRMRVEALENEE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/904 Sequence name : 904 Sequence length : 574 VALUES OF COMPUTED PARAMETERS Coef20 : 4.305 CoefTot : 0.257 ChDiff : 13 ZoneTo : 34 KR : 10 DE : 0 CleavSite : 25 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.541 1.376 0.225 0.504 MesoH : -0.369 0.506 -0.266 0.172 MuHd_075 : 33.252 12.896 6.358 6.475 MuHd_095 : 35.748 11.424 7.575 6.993 MuHd_100 : 29.550 11.506 7.256 5.430 MuHd_105 : 36.388 15.065 9.356 6.500 Hmax_075 : 2.100 6.600 -1.817 0.814 Hmax_095 : 5.900 -2.100 -0.862 1.090 Hmax_100 : 5.900 2.600 -2.020 1.090 Hmax_105 : 10.967 2.800 -0.175 1.937 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0255 0.9745 DFMC : 0.0071 0.9929 This protein is probably imported in mitochondria. f(Ser) = 0.2059 f(Arg) = 0.1765 CMi = 0.64935 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 574 LmjF.13.0680 MGRGYSASRSKSGRPTLRMKRSRSMSLHALKKNMDAHEAAKAANGVSTEASSLSSAAATEVPRKALKVVRQRRAPSSLLS 80 SSSSATASPTPAAAKATMKAASTKVKSADGGGRTTTTSAGPRSQSAAFRRNLEDLEKQFDAAMEASEDEDETVMNTTTMT 160 KYKECGRVVDAVLDQLAAACVPGANTKVLCDTGDEEIVSRLKGLFVKTKGADGRRLARGISYPTNVSVNEMLCNDSPYRL 240 EDGTILKDGDVVKLHVGCHLDGYPVSAARTVVVTTRAASAATEGEEEEAQRKRGSPAATLSSRSAVGNTIEAARVSLLAM 320 MHALRPGTLNADITDVIAAVGQHYGVQAVEGVLSNRSKRWVPDGIDCIIARRVTSEDPHQDVADCEVGEHQVWCLDVAFT 400 NNHNYRITLSEKPVTLFRRTPADFHADARVRQANETLQEITDTHFCFPFHFKSLENPLKGKLGIHVLEKKGMVDKLPPLR 480 TKHGYVTARFSATVAVTAKRVTVLCGAPPTASVAMPPVMRSTVSESTLAAEVLAVLRRPYEFADVRAVVTAKDARGQSSP 560 ATKRMRVEALENEE 640 ....................P........................................................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......................................P......................................... 400 ................................................................................ 480 ................................................................................ 560 .............. 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LmjF.13.0680 3 ----MGR|GY 0.125 . LmjF.13.0680 9 RGYSASR|SK 0.113 . LmjF.13.0680 11 YSASRSK|SG 0.091 . LmjF.13.0680 14 SRSKSGR|PT 0.153 . LmjF.13.0680 18 SGRPTLR|MK 0.085 . LmjF.13.0680 20 RPTLRMK|RS 0.060 . LmjF.13.0680 21 PTLRMKR|SR 0.666 *ProP* LmjF.13.0680 23 LRMKRSR|SM 0.164 . LmjF.13.0680 31 MSLHALK|KN 0.065 . LmjF.13.0680 32 SLHALKK|NM 0.157 . LmjF.13.0680 41 DAHEAAK|AA 0.078 . LmjF.13.0680 63 AATEVPR|KA 0.101 . LmjF.13.0680 64 ATEVPRK|AL 0.084 . LmjF.13.0680 67 VPRKALK|VV 0.074 . LmjF.13.0680 70 KALKVVR|QR 0.078 . LmjF.13.0680 72 LKVVRQR|RA 0.095 . LmjF.13.0680 73 KVVRQRR|AP 0.442 . LmjF.13.0680 95 PTPAAAK|AT 0.073 . LmjF.13.0680 99 AAKATMK|AA 0.093 . LmjF.13.0680 104 MKAASTK|VK 0.083 . LmjF.13.0680 106 AASTKVK|SA 0.236 . LmjF.13.0680 113 SADGGGR|TT 0.084 . LmjF.13.0680 122 TTSAGPR|SQ 0.200 . LmjF.13.0680 129 SQSAAFR|RN 0.095 . LmjF.13.0680 130 QSAAFRR|NL 0.331 . LmjF.13.0680 137 NLEDLEK|QF 0.068 . LmjF.13.0680 161 NTTTMTK|YK 0.063 . LmjF.13.0680 163 TTMTKYK|EC 0.100 . LmjF.13.0680 167 KYKECGR|VV 0.144 . LmjF.13.0680 187 VPGANTK|VL 0.069 . LmjF.13.0680 200 DEEIVSR|LK 0.086 . LmjF.13.0680 202 EIVSRLK|GL 0.064 . LmjF.13.0680 207 LKGLFVK|TK 0.073 . LmjF.13.0680 209 GLFVKTK|GA 0.090 . LmjF.13.0680 214 TKGADGR|RL 0.112 . LmjF.13.0680 215 KGADGRR|LA 0.130 . LmjF.13.0680 218 DGRRLAR|GI 0.304 . LmjF.13.0680 239 CNDSPYR|LE 0.069 . LmjF.13.0680 247 EDGTILK|DG 0.067 . LmjF.13.0680 253 KDGDVVK|LH 0.059 . LmjF.13.0680 269 YPVSAAR|TV 0.102 . LmjF.13.0680 276 TVVVTTR|AA 0.157 . LmjF.13.0680 291 EEEEAQR|KR 0.077 . LmjF.13.0680 292 EEEAQRK|RG 0.077 . LmjF.13.0680 293 EEAQRKR|GS 0.236 . LmjF.13.0680 303 AATLSSR|SA 0.122 . LmjF.13.0680 314 NTIEAAR|VS 0.083 . LmjF.13.0680 325 AMMHALR|PG 0.069 . LmjF.13.0680 356 EGVLSNR|SK 0.126 . LmjF.13.0680 358 VLSNRSK|RW 0.069 . LmjF.13.0680 359 LSNRSKR|WV 0.870 *ProP* LmjF.13.0680 371 IDCIIAR|RV 0.122 . LmjF.13.0680 372 DCIIARR|VT 0.111 . LmjF.13.0680 406 TNNHNYR|IT 0.119 . LmjF.13.0680 412 RITLSEK|PV 0.071 . LmjF.13.0680 418 KPVTLFR|RT 0.085 . LmjF.13.0680 419 PVTLFRR|TP 0.102 . LmjF.13.0680 429 DFHADAR|VR 0.088 . LmjF.13.0680 431 HADARVR|QA 0.107 . LmjF.13.0680 452 CFPFHFK|SL 0.097 . LmjF.13.0680 459 SLENPLK|GK 0.066 . LmjF.13.0680 461 ENPLKGK|LG 0.064 . LmjF.13.0680 469 GIHVLEK|KG 0.057 . LmjF.13.0680 470 IHVLEKK|GM 0.100 . LmjF.13.0680 475 KKGMVDK|LP 0.057 . LmjF.13.0680 480 DKLPPLR|TK 0.076 . LmjF.13.0680 482 LPPLRTK|HG 0.060 . LmjF.13.0680 489 HGYVTAR|FS 0.135 . LmjF.13.0680 499 TVAVTAK|RV 0.084 . LmjF.13.0680 500 VAVTAKR|VT 0.109 . LmjF.13.0680 520 AMPPVMR|ST 0.103 . LmjF.13.0680 537 EVLAVLR|RP 0.061 . LmjF.13.0680 538 VLAVLRR|PY 0.130 . LmjF.13.0680 546 YEFADVR|AV 0.098 . LmjF.13.0680 552 RAVVTAK|DA 0.100 . LmjF.13.0680 555 VTAKDAR|GQ 0.087 . LmjF.13.0680 563 QSSPATK|RM 0.066 . LmjF.13.0680 564 SSPATKR|MR 0.170 . LmjF.13.0680 566 PATKRMR|VE 0.070 . ____________________________^_________________

  • Fasta :-

    >LmjF.13.0680 ATGGGCCGCGGGTACAGTGCCAGCCGTAGCAAGAGCGGCCGTCCGACGCTGCGGATGAAG CGCTCCCGTTCTATGTCGCTGCACGCGCTGAAGAAGAACATGGACGCTCACGAGGCGGCC AAGGCGGCCAACGGCGTCAGCACCGAGGCGTCGTCGTTGTCCTCTGCCGCGGCGACCGAG GTGCCGCGCAAGGCGCTCAAGGTGGTGCGCCAGCGTCGCGCGCCGTCTTCGTTGCTTTCA TCGTCGTCGTCAGCAACAGCAAGCCCCACCCCCGCCGCTGCGAAGGCGACGATGAAGGCG GCGTCAACGAAGGTCAAGTCCGCCGACGGCGGCGGTCGCACCACCACAACGAGCGCCGGC CCTCGCTCGCAGTCCGCTGCCTTTCGCCGGAATCTGGAAGACCTCGAAAAGCAGTTCGAC GCCGCCATGGAGGCCAGCGAGGACGAAGACGAAACCGTCATGAACACCACAACCATGACC AAGTACAAGGAGTGCGGCCGCGTTGTCGACGCTGTGCTGGATCAGCTCGCGGCGGCGTGC GTACCCGGCGCGAACACAAAGGTCCTGTGCGACACAGGCGACGAGGAAATCGTGAGCCGA CTGAAGGGGCTGTTCGTGAAGACCAAGGGCGCGGATGGAAGGCGGCTGGCGCGCGGCATC TCGTACCCGACGAACGTGTCCGTGAACGAAATGCTGTGCAACGACAGCCCGTACCGCTTG GAGGACGGCACCATTTTGAAGGACGGCGACGTCGTGAAGCTGCACGTGGGCTGCCACCTC GACGGCTACCCTGTGAGCGCCGCACGCACGGTCGTCGTCACTACGAGAGCGGCTTCCGCG GCTACGGAGGGCGAGGAGGAGGAGGCGCAGAGGAAGAGGGGCAGCCCAGCGGCGACATTG TCGTCACGCTCAGCCGTTGGCAACACCATCGAGGCAGCTCGCGTGTCGTTGCTGGCGATG ATGCACGCGCTGCGCCCTGGCACACTCAACGCCGACATCACTGACGTCATCGCCGCCGTC GGGCAGCACTACGGCGTGCAGGCTGTGGAGGGCGTGCTGTCGAACCGGAGCAAGCGCTGG GTGCCGGATGGGATTGACTGTATCATTGCCCGACGCGTGACGAGCGAGGACCCGCATCAG GACGTAGCCGACTGTGAGGTGGGCGAGCATCAGGTGTGGTGCCTCGACGTCGCCTTCACT AACAACCACAACTACCGCATCACGCTCTCTGAGAAGCCCGTGACACTGTTTCGTCGCACC CCTGCCGACTTCCACGCGGACGCGCGGGTGAGGCAGGCGAACGAGACGCTGCAGGAGATC ACTGACACACATTTCTGCTTTCCTTTCCACTTCAAGAGCCTCGAGAACCCGCTAAAGGGG AAGCTTGGCATTCACGTGTTGGAGAAGAAGGGCATGGTGGACAAGCTGCCCCCGTTGCGC ACGAAGCACGGCTACGTGACGGCGCGGTTTAGTGCAACTGTGGCGGTGACGGCGAAGCGG GTGACGGTGCTGTGCGGCGCGCCGCCCACCGCCTCTGTGGCGATGCCGCCGGTAATGCGG TCAACCGTGTCGGAGAGCACATTGGCGGCCGAGGTGCTTGCGGTGCTGAGACGCCCGTAC GAGTTCGCCGATGTGCGCGCGGTAGTGACGGCGAAAGACGCGAGGGGCCAGAGCAGCCCC GCCACGAAACGCATGCGCGTAGAGGCGCTGGAGAACGAAGAGTAG
  • Download Fasta

  • Fasta :-

    MGRGYSASRSKSGRPTLRMKRSRSMSLHALKKNMDAHEAAKAANGVSTEASSLSSAAATE VPRKALKVVRQRRAPSSLLSSSSSATASPTPAAAKATMKAASTKVKSADGGGRTTTTSAG PRSQSAAFRRNLEDLEKQFDAAMEASEDEDETVMNTTTMTKYKECGRVVDAVLDQLAAAC VPGANTKVLCDTGDEEIVSRLKGLFVKTKGADGRRLARGISYPTNVSVNEMLCNDSPYRL EDGTILKDGDVVKLHVGCHLDGYPVSAARTVVVTTRAASAATEGEEEEAQRKRGSPAATL SSRSAVGNTIEAARVSLLAMMHALRPGTLNADITDVIAAVGQHYGVQAVEGVLSNRSKRW VPDGIDCIIARRVTSEDPHQDVADCEVGEHQVWCLDVAFTNNHNYRITLSEKPVTLFRRT PADFHADARVRQANETLQEITDTHFCFPFHFKSLENPLKGKLGIHVLEKKGMVDKLPPLR TKHGYVTARFSATVAVTAKRVTVLCGAPPTASVAMPPVMRSTVSESTLAAEVLAVLRRPY EFADVRAVVTAKDARGQSSPATKRMRVEALENEE

  • title: active site
  • coordinates: N234,H255,S266,N401,D474,S491
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.13.068026 SSRSMSLHAL0.995unspLmjF.13.068026 SSRSMSLHAL0.995unspLmjF.13.068026 SSRSMSLHAL0.995unspLmjF.13.0680102 SMKAASTKVK0.992unspLmjF.13.0680295 SRKRGSPAAT0.993unspLmjF.13.068012 SSRSKSGRPT0.997unspLmjF.13.068024 SKRSRSMSLH0.992unsp

LmjF.13.0680      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India