LmjF.13.0870 | mitochondrial processing peptidase alpha subunit, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003824      GO:0046872      

  • Computed_GO_Functions:  catalytic activity      metal ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005739      

  • Curated_GO_Components:  mitochondrion      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.13.0870OTHER0.7599000.0053800.234720
No Results

  • Fasta :-

    >LmjF.13.0870 MLRRVVAPAPVSATAACAGQARSIYEYKFGQTPLTQPFGGTSRLPPGPSSNPAPVAPGKV EITKLHNGARVITHNLGGPSVSVGAYILAGPAYDPPSAPGAGAMMHLALTTSNYNNSLFQ LDRNIRSVGAAQSHFEKHKHYIGIRIDARADKWKSAASTSSFSQRRQLQNQKQAEQQFSL NLVQDNIFTCIAAPRFHEPDVERFRDTIDNQVEELRWQCPAEYAKQMLETVAFYREPLGN PRFVPAMSNSIISSSVLLEQYSRYIVPSRVVVAGVNVDHAALIAEYENTPFPHSASAPHH ARAQPCVVNWKDEASQYTGGERHDHEDRPKVMGTKPDMDPESIIAVGWLAYGKDRKMVKD HAASMVVGALMDIGFSGCMRCGAPDEMHEHTGLRAFYNPYQTAGLIGFTAKAEPQAAVRM VTDAVKMVRASQASVADSMLSVAKKMAKTQFMVQTVDTIRDYCDYLGTCLAVDSDSTLAT SVEEVVDAINSVNAADVKRVYEKMFSNKTSLYGHGEMLGFPSMRQMGL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/479 Sequence name : 479 Sequence length : 528 VALUES OF COMPUTED PARAMETERS Coef20 : 4.548 CoefTot : -5.842 ChDiff : 1 ZoneTo : 135 KR : 10 DE : 4 CleavSite : 128 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.482 1.471 0.252 0.572 MesoH : 0.019 0.308 -0.274 0.254 MuHd_075 : 35.487 25.542 9.639 9.082 MuHd_095 : 29.131 20.465 8.936 6.838 MuHd_100 : 31.034 23.643 8.992 8.722 MuHd_105 : 36.693 26.230 9.863 9.484 Hmax_075 : 14.600 11.800 2.382 6.120 Hmax_095 : 12.000 17.300 2.768 3.754 Hmax_100 : 12.400 16.400 3.164 5.260 Hmax_105 : 6.650 13.417 0.658 4.877 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7530 0.2470 DFMC : 0.6383 0.3617
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 528 LmjF.13.0870 MLRRVVAPAPVSATAACAGQARSIYEYKFGQTPLTQPFGGTSRLPPGPSSNPAPVAPGKVEITKLHNGARVITHNLGGPS 80 VSVGAYILAGPAYDPPSAPGAGAMMHLALTTSNYNNSLFQLDRNIRSVGAAQSHFEKHKHYIGIRIDARADKWKSAASTS 160 SFSQRRQLQNQKQAEQQFSLNLVQDNIFTCIAAPRFHEPDVERFRDTIDNQVEELRWQCPAEYAKQMLETVAFYREPLGN 240 PRFVPAMSNSIISSSVLLEQYSRYIVPSRVVVAGVNVDHAALIAEYENTPFPHSASAPHHARAQPCVVNWKDEASQYTGG 320 ERHDHEDRPKVMGTKPDMDPESIIAVGWLAYGKDRKMVKDHAASMVVGALMDIGFSGCMRCGAPDEMHEHTGLRAFYNPY 400 QTAGLIGFTAKAEPQAAVRMVTDAVKMVRASQASVADSMLSVAKKMAKTQFMVQTVDTIRDYCDYLGTCLAVDSDSTLAT 480 SVEEVVDAINSVNAADVKRVYEKMFSNKTSLYGHGEMLGFPSMRQMGL 560 ................................................................................ 80 .............................................P.................................. 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................ 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmjF.13.0870 3 ----MLR|RV 0.086 . LmjF.13.0870 4 ---MLRR|VV 0.186 . LmjF.13.0870 22 ACAGQAR|SI 0.188 . LmjF.13.0870 28 RSIYEYK|FG 0.078 . LmjF.13.0870 43 PFGGTSR|LP 0.060 . LmjF.13.0870 59 APVAPGK|VE 0.071 . LmjF.13.0870 64 GKVEITK|LH 0.065 . LmjF.13.0870 70 KLHNGAR|VI 0.129 . LmjF.13.0870 123 SLFQLDR|NI 0.102 . LmjF.13.0870 126 QLDRNIR|SV 0.700 *ProP* LmjF.13.0870 137 AQSHFEK|HK 0.082 . LmjF.13.0870 139 SHFEKHK|HY 0.080 . LmjF.13.0870 145 KHYIGIR|ID 0.082 . LmjF.13.0870 149 GIRIDAR|AD 0.089 . LmjF.13.0870 152 IDARADK|WK 0.176 . LmjF.13.0870 154 ARADKWK|SA 0.114 . LmjF.13.0870 165 TSSFSQR|RQ 0.148 . LmjF.13.0870 166 SSFSQRR|QL 0.169 . LmjF.13.0870 172 RQLQNQK|QA 0.074 . LmjF.13.0870 195 TCIAAPR|FH 0.110 . LmjF.13.0870 203 HEPDVER|FR 0.114 . LmjF.13.0870 205 PDVERFR|DT 0.125 . LmjF.13.0870 216 NQVEELR|WQ 0.093 . LmjF.13.0870 225 CPAEYAK|QM 0.061 . LmjF.13.0870 235 ETVAFYR|EP 0.072 . LmjF.13.0870 242 EPLGNPR|FV 0.115 . LmjF.13.0870 263 LLEQYSR|YI 0.093 . LmjF.13.0870 269 RYIVPSR|VV 0.116 . LmjF.13.0870 302 SAPHHAR|AQ 0.110 . LmjF.13.0870 311 PCVVNWK|DE 0.067 . LmjF.13.0870 322 QYTGGER|HD 0.074 . LmjF.13.0870 328 RHDHEDR|PK 0.078 . LmjF.13.0870 330 DHEDRPK|VM 0.073 . LmjF.13.0870 335 PKVMGTK|PD 0.064 . LmjF.13.0870 353 GWLAYGK|DR 0.065 . LmjF.13.0870 355 LAYGKDR|KM 0.081 . LmjF.13.0870 356 AYGKDRK|MV 0.124 . LmjF.13.0870 359 KDRKMVK|DH 0.079 . LmjF.13.0870 380 GFSGCMR|CG 0.115 . LmjF.13.0870 394 HEHTGLR|AF 0.084 . LmjF.13.0870 411 LIGFTAK|AE 0.070 . LmjF.13.0870 419 EPQAAVR|MV 0.169 . LmjF.13.0870 426 MVTDAVK|MV 0.081 . LmjF.13.0870 429 DAVKMVR|AS 0.095 . LmjF.13.0870 444 SMLSVAK|KM 0.070 . LmjF.13.0870 445 MLSVAKK|MA 0.270 . LmjF.13.0870 448 VAKKMAK|TQ 0.069 . LmjF.13.0870 460 QTVDTIR|DY 0.122 . LmjF.13.0870 498 VNAADVK|RV 0.076 . LmjF.13.0870 499 NAADVKR|VY 0.243 . LmjF.13.0870 503 VKRVYEK|MF 0.074 . LmjF.13.0870 508 EKMFSNK|TS 0.067 . LmjF.13.0870 524 LGFPSMR|QM 0.108 . ____________________________^_________________

  • Fasta :-

    >LmjF.13.0870 ATGCTCCGCCGTGTAGTCGCTCCGGCCCCGGTGTCGGCCACCGCAGCCTGCGCTGGGCAG GCTCGCAGCATCTACGAGTACAAGTTTGGTCAGACCCCCCTGACCCAACCGTTTGGCGGA ACCTCTCGCCTGCCGCCTGGCCCCTCGTCGAATCCTGCCCCGGTTGCTCCCGGGAAGGTG GAGATCACGAAGCTGCACAACGGCGCGCGCGTCATCACGCACAACCTCGGTGGACCGTCG GTGTCCGTTGGTGCCTACATACTCGCCGGCCCCGCGTACGACCCACCGAGCGCGCCGGGC GCGGGAGCCATGATGCACCTTGCCCTGACGACGAGCAACTACAATAATTCTCTGTTCCAG CTTGACCGCAACATTCGCAGTGTCGGCGCCGCCCAGTCGCACTTCGAGAAGCACAAGCAC TACATTGGCATTCGCATCGACGCCCGCGCCGACAAATGGAAGAGCGCTGCGTCGACGTCA TCGTTTTCACAGCGGCGGCAGCTGCAGAACCAGAAGCAAGCGGAGCAGCAGTTCTCGTTG AATCTGGTGCAGGACAACATCTTTACCTGCATCGCAGCGCCACGCTTCCACGAGCCGGAT GTGGAGCGCTTCCGTGACACCATTGACAACCAGGTCGAGGAGCTCCGCTGGCAATGCCCG GCCGAGTACGCGAAGCAGATGCTGGAGACGGTTGCCTTCTACCGTGAGCCGCTCGGCAAC CCTCGCTTCGTGCCGGCGATGAGCAACAGCATCATTTCGAGCAGCGTACTGCTGGAGCAG TACAGCCGCTACATCGTGCCGTCGCGCGTCGTCGTCGCCGGCGTCAACGTCGATCACGCC GCGCTGATTGCCGAGTATGAGAACACCCCGTTCCCACACTCCGCCTCCGCGCCGCACCAC GCCCGCGCGCAGCCGTGCGTGGTGAACTGGAAGGATGAGGCCTCTCAGTACACTGGGGGC GAGCGCCACGACCACGAGGACCGCCCCAAGGTGATGGGCACGAAGCCGGACATGGACCCG GAGTCCATCATCGCCGTCGGCTGGCTCGCCTACGGCAAGGACAGGAAGATGGTGAAGGAC CACGCCGCCTCAATGGTCGTGGGGGCGCTGATGGACATCGGGTTCAGCGGCTGCATGCGC TGCGGCGCCCCGGATGAAATGCACGAGCACACGGGCCTACGCGCCTTCTACAACCCCTAC CAAACGGCTGGCCTGATCGGCTTCACGGCGAAGGCAGAGCCGCAGGCAGCGGTGCGCATG GTGACGGACGCTGTGAAGATGGTGCGAGCGAGCCAGGCCTCTGTCGCGGACTCGATGCTG TCCGTGGCGAAGAAAATGGCGAAAACACAGTTCATGGTGCAGACGGTCGACACCATCCGC GACTACTGCGACTACCTCGGAACCTGCCTCGCCGTGGATAGCGACTCGACCCTAGCCACA TCGGTGGAAGAAGTTGTCGACGCCATCAACTCTGTCAACGCGGCGGATGTGAAGAGGGTG TACGAGAAGATGTTCTCGAACAAAACCAGCCTGTACGGCCACGGCGAGATGCTCGGCTTC CCTTCCATGCGCCAGATGGGTCTGTAG
  • Download Fasta

  • Fasta :-

    MLRRVVAPAPVSATAACAGQARSIYEYKFGQTPLTQPFGGTSRLPPGPSSNPAPVAPGKV EITKLHNGARVITHNLGGPSVSVGAYILAGPAYDPPSAPGAGAMMHLALTTSNYNNSLFQ LDRNIRSVGAAQSHFEKHKHYIGIRIDARADKWKSAASTSSFSQRRQLQNQKQAEQQFSL NLVQDNIFTCIAAPRFHEPDVERFRDTIDNQVEELRWQCPAEYAKQMLETVAFYREPLGN PRFVPAMSNSIISSSVLLEQYSRYIVPSRVVVAGVNVDHAALIAEYENTPFPHSASAPHH ARAQPCVVNWKDEASQYTGGERHDHEDRPKVMGTKPDMDPESIIAVGWLAYGKDRKMVKD HAASMVVGALMDIGFSGCMRCGAPDEMHEHTGLRAFYNPYQTAGLIGFTAKAEPQAAVRM VTDAVKMVRASQASVADSMLSVAKKMAKTQFMVQTVDTIRDYCDYLGTCLAVDSDSTLAT SVEEVVDAINSVNAADVKRVYEKMFSNKTSLYGHGEMLGFPSMRQMGL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.13.0870481 STLATSVEEV0.996unspLmjF.13.0870481 STLATSVEEV0.996unspLmjF.13.0870481 STLATSVEEV0.996unspLmjF.13.0870163 STSSFSQRRQ0.996unspLmjF.13.0870434 SASQASVADS0.993unsp

LmjF.13.0870      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India