LmjF.13.1090 | proteasome regulatory ATPase subunit 2, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.13.1090OTHER0.9999910.0000030.000006
No Results

  • Fasta :-

    >LmjF.13.1090 MGQNMPKPPGAGKPEKWEPPVAPEIGKRKKKRGPDAATRIPKVYPNRACLLRKYRLERCK DYLLLEEEFLRTINAQRDAQSNLEEGAMGHYEAELKRVEDIRGTPLEVATLEEAVDDSHA IVSISGTEYYVPLMSFVDKEQLELGCSVLLHDRQHSIVGVLKDDVDPLVSVMKVDKAPED TYADIGGLEQQIQEIKEAVEFPLSHPELYDEIGIKPPKGVILYGVPGTGKTLLAKAVANR TSATFLRVVGSELIQKYSGEGPKLVRELFRVAEEHSPAIVFIDEIDAIGTKRYDTDSSGT KEVQRTMLELLTQLDGFDSSNDVKVIMATNRIDTLDPALIRPGRIDRKIEFPFPDEKTKR RIFEIHTSRMSLAEDVDISEFIHAKDEMSGADVKAICTEAGLLALRERRMKVCQADFIKG KENVQYRKDKSTFSRFYL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/335 Sequence name : 335 Sequence length : 438 VALUES OF COMPUTED PARAMETERS Coef20 : 1.865 CoefTot : -2.136 ChDiff : -9 ZoneTo : 14 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.065 1.112 0.079 0.519 MesoH : -0.938 0.256 -0.447 0.175 MuHd_075 : 17.942 13.180 6.068 3.292 MuHd_095 : 20.162 7.698 3.761 3.113 MuHd_100 : 14.744 7.864 3.760 1.959 MuHd_105 : 9.186 7.998 3.746 2.545 Hmax_075 : 1.167 0.117 -2.560 2.053 Hmax_095 : 1.312 -4.375 -3.658 1.566 Hmax_100 : -0.400 -3.400 -3.306 0.980 Hmax_105 : 0.200 -3.700 -2.752 1.740 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9835 0.0165 DFMC : 0.9743 0.0257
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 438 LmjF.13.1090 MGQNMPKPPGAGKPEKWEPPVAPEIGKRKKKRGPDAATRIPKVYPNRACLLRKYRLERCKDYLLLEEEFLRTINAQRDAQ 80 SNLEEGAMGHYEAELKRVEDIRGTPLEVATLEEAVDDSHAIVSISGTEYYVPLMSFVDKEQLELGCSVLLHDRQHSIVGV 160 LKDDVDPLVSVMKVDKAPEDTYADIGGLEQQIQEIKEAVEFPLSHPELYDEIGIKPPKGVILYGVPGTGKTLLAKAVANR 240 TSATFLRVVGSELIQKYSGEGPKLVRELFRVAEEHSPAIVFIDEIDAIGTKRYDTDSSGTKEVQRTMLELLTQLDGFDSS 320 NDVKVIMATNRIDTLDPALIRPGRIDRKIEFPFPDEKTKRRIFEIHTSRMSLAEDVDISEFIHAKDEMSGADVKAICTEA 400 GLLALRERRMKVCQADFIKGKENVQYRKDKSTFSRFYL 480 ...............................P................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ...................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmjF.13.1090 7 MGQNMPK|PP 0.080 . LmjF.13.1090 13 KPPGAGK|PE 0.062 . LmjF.13.1090 16 GAGKPEK|WE 0.073 . LmjF.13.1090 27 VAPEIGK|RK 0.058 . LmjF.13.1090 28 APEIGKR|KK 0.173 . LmjF.13.1090 29 PEIGKRK|KK 0.076 . LmjF.13.1090 30 EIGKRKK|KR 0.110 . LmjF.13.1090 31 IGKRKKK|RG 0.277 . LmjF.13.1090 32 GKRKKKR|GP 0.509 *ProP* LmjF.13.1090 39 GPDAATR|IP 0.074 . LmjF.13.1090 42 AATRIPK|VY 0.086 . LmjF.13.1090 47 PKVYPNR|AC 0.068 . LmjF.13.1090 52 NRACLLR|KY 0.085 . LmjF.13.1090 53 RACLLRK|YR 0.073 . LmjF.13.1090 55 CLLRKYR|LE 0.151 . LmjF.13.1090 58 RKYRLER|CK 0.265 . LmjF.13.1090 60 YRLERCK|DY 0.069 . LmjF.13.1090 71 LEEEFLR|TI 0.095 . LmjF.13.1090 77 RTINAQR|DA 0.118 . LmjF.13.1090 96 HYEAELK|RV 0.091 . LmjF.13.1090 97 YEAELKR|VE 0.133 . LmjF.13.1090 102 KRVEDIR|GT 0.111 . LmjF.13.1090 139 LMSFVDK|EQ 0.071 . LmjF.13.1090 153 SVLLHDR|QH 0.085 . LmjF.13.1090 162 SIVGVLK|DD 0.069 . LmjF.13.1090 173 PLVSVMK|VD 0.065 . LmjF.13.1090 176 SVMKVDK|AP 0.068 . LmjF.13.1090 196 QQIQEIK|EA 0.060 . LmjF.13.1090 215 YDEIGIK|PP 0.060 . LmjF.13.1090 218 IGIKPPK|GV 0.081 . LmjF.13.1090 230 GVPGTGK|TL 0.056 . LmjF.13.1090 235 GKTLLAK|AV 0.072 . LmjF.13.1090 240 AKAVANR|TS 0.097 . LmjF.13.1090 247 TSATFLR|VV 0.211 . LmjF.13.1090 256 GSELIQK|YS 0.079 . LmjF.13.1090 263 YSGEGPK|LV 0.072 . LmjF.13.1090 266 EGPKLVR|EL 0.079 . LmjF.13.1090 270 LVRELFR|VA 0.118 . LmjF.13.1090 291 IDAIGTK|RY 0.059 . LmjF.13.1090 292 DAIGTKR|YD 0.195 . LmjF.13.1090 301 TDSSGTK|EV 0.078 . LmjF.13.1090 305 GTKEVQR|TM 0.086 . LmjF.13.1090 324 DSSNDVK|VI 0.068 . LmjF.13.1090 331 VIMATNR|ID 0.074 . LmjF.13.1090 341 LDPALIR|PG 0.073 . LmjF.13.1090 344 ALIRPGR|ID 0.308 . LmjF.13.1090 347 RPGRIDR|KI 0.307 . LmjF.13.1090 348 PGRIDRK|IE 0.076 . LmjF.13.1090 357 FPFPDEK|TK 0.060 . LmjF.13.1090 359 FPDEKTK|RR 0.066 . LmjF.13.1090 360 PDEKTKR|RI 0.229 . LmjF.13.1090 361 DEKTKRR|IF 0.164 . LmjF.13.1090 369 FEIHTSR|MS 0.082 . LmjF.13.1090 385 SEFIHAK|DE 0.079 . LmjF.13.1090 394 MSGADVK|AI 0.072 . LmjF.13.1090 406 AGLLALR|ER 0.065 . LmjF.13.1090 408 LLALRER|RM 0.084 . LmjF.13.1090 409 LALRERR|MK 0.349 . LmjF.13.1090 411 LRERRMK|VC 0.112 . LmjF.13.1090 419 CQADFIK|GK 0.076 . LmjF.13.1090 421 ADFIKGK|EN 0.070 . LmjF.13.1090 427 KENVQYR|KD 0.094 . LmjF.13.1090 428 ENVQYRK|DK 0.094 . LmjF.13.1090 430 VQYRKDK|ST 0.217 . LmjF.13.1090 435 DKSTFSR|FY 0.127 . ____________________________^_________________

  • Fasta :-

    >LmjF.13.1090 ATGGGGCAGAACATGCCAAAGCCGCCGGGTGCCGGCAAACCAGAGAAGTGGGAACCTCCT GTGGCGCCGGAGATCGGCAAGCGCAAGAAGAAGCGCGGCCCCGACGCGGCCACGCGCATT CCGAAGGTCTATCCGAACCGCGCCTGCCTCCTCCGAAAGTACCGCCTTGAGCGCTGCAAG GACTACCTCCTGCTAGAGGAAGAGTTCCTGCGCACAATCAACGCCCAGCGCGACGCGCAG TCGAACCTGGAGGAGGGTGCGATGGGCCACTACGAGGCGGAGCTGAAGCGCGTCGAGGAC ATTCGTGGCACCCCGCTGGAGGTGGCGACGCTCGAGGAGGCAGTGGACGACTCGCACGCG ATCGTCTCCATCTCTGGCACCGAGTACTACGTGCCCCTCATGTCGTTCGTAGACAAGGAG CAGTTAGAGCTGGGGTGCAGCGTGCTGCTGCATGACCGGCAGCACAGCATCGTTGGCGTG CTTAAGGACGACGTCGACCCGCTGGTGAGTGTCATGAAGGTTGACAAGGCGCCGGAGGAC ACGTACGCGGACATTGGTGGCCTGGAGCAGCAGATCCAGGAGATCAAGGAGGCGGTCGAG TTTCCACTCTCCCACCCAGAGCTGTACGACGAGATAGGCATCAAGCCACCGAAGGGTGTC ATTCTCTACGGTGTCCCCGGCACCGGCAAGACGCTGCTGGCCAAAGCCGTCGCGAACCGC ACCAGCGCCACGTTCCTGCGGGTGGTGGGATCGGAGCTGATTCAGAAGTACTCCGGCGAG GGCCCCAAGCTCGTGCGTGAGCTCTTCCGGGTTGCGGAGGAGCACTCGCCAGCGATCGTG TTCATTGATGAAATCGACGCCATCGGCACGAAGCGCTACGACACGGACAGCAGCGGCACG AAAGAGGTGCAGCGTACGATGCTGGAGCTGCTCACGCAACTGGACGGCTTCGATAGCAGC AACGACGTGAAAGTGATCATGGCAACCAACCGCATCGACACCCTCGACCCGGCTCTCATC CGCCCTGGTCGTATCGACCGCAAGATTGAGTTCCCCTTCCCAGACGAGAAGACGAAGCGC CGCATCTTCGAAATCCATACAAGCCGCATGTCACTCGCCGAAGACGTCGACATCTCCGAG TTTATCCACGCGAAGGATGAGATGAGCGGCGCGGATGTGAAGGCCATCTGCACAGAGGCC GGGCTGCTGGCCCTGCGTGAGCGCCGCATGAAGGTGTGCCAAGCCGACTTTATCAAGGGC AAGGAAAATGTGCAGTACCGCAAGGACAAGTCGACGTTTTCGCGTTTTTACCTGTGA
  • Download Fasta

  • Fasta :-

    MGQNMPKPPGAGKPEKWEPPVAPEIGKRKKKRGPDAATRIPKVYPNRACLLRKYRLERCK DYLLLEEEFLRTINAQRDAQSNLEEGAMGHYEAELKRVEDIRGTPLEVATLEEAVDDSHA IVSISGTEYYVPLMSFVDKEQLELGCSVLLHDRQHSIVGVLKDDVDPLVSVMKVDKAPED TYADIGGLEQQIQEIKEAVEFPLSHPELYDEIGIKPPKGVILYGVPGTGKTLLAKAVANR TSATFLRVVGSELIQKYSGEGPKLVRELFRVAEEHSPAIVFIDEIDAIGTKRYDTDSSGT KEVQRTMLELLTQLDGFDSSNDVKVIMATNRIDTLDPALIRPGRIDRKIEFPFPDEKTKR RIFEIHTSRMSLAEDVDISEFIHAKDEMSGADVKAICTEAGLLALRERRMKVCQADFIKG KENVQYRKDKSTFSRFYL

    No Results
  • title: ATP binding site
  • coordinates: V225,P226,G227,T228,G229,K230,T231,L232,D283,N330
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.13.1090182 YPEDTYADIG0.993unspLmjF.13.1090371 STSRMSLAED0.992unsp

LmjF.13.1090      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India