LmjF.14.0310 | proteasome alpha 3 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.14.0310OTHER0.9998680.0000660.000066
No Results

  • Fasta :-

    >LmjF.14.0310 MSHRYDSRTTTFSPEGRLYQVEYAVEAIQQAGTVIGVCTKDGVVLAGEKMVPHPLFDSEN MQDKNISGEKMYKIAEHIGCSVAGVTSDAYALLNYARLSALRHQYTFQEPIAIEDLCRIL CDEKQLYTQYGGVRPYGVSFLLVGWDRYYGYQLYSTEPSGDYSAWSAYAIGQNDQVAHSL LKKDWHENMTLEDGMLLALRVLGKTMDTAKIDLGRVEVAVMRKVPASNVDQLLEPFKHHP KTAPQFQILAPSELKPHAERADQAREAEEQAEAERQRQQEQALES
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/802 Sequence name : 802 Sequence length : 285 VALUES OF COMPUTED PARAMETERS Coef20 : 3.893 CoefTot : -0.149 ChDiff : -11 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.718 1.224 0.117 0.462 MesoH : -0.864 0.160 -0.372 0.170 MuHd_075 : 14.344 3.037 3.055 4.089 MuHd_095 : 8.799 2.372 2.441 1.127 MuHd_100 : 10.958 6.185 3.112 2.333 MuHd_105 : 14.859 8.363 3.444 4.238 Hmax_075 : -3.850 -5.250 -3.650 0.210 Hmax_095 : -2.187 -3.325 -2.391 -0.200 Hmax_100 : 9.800 0.700 0.016 2.170 Hmax_105 : -2.450 -3.967 -2.377 1.132 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9782 0.0218 DFMC : 0.9584 0.0416
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 285 LmjF.14.0310 MSHRYDSRTTTFSPEGRLYQVEYAVEAIQQAGTVIGVCTKDGVVLAGEKMVPHPLFDSENMQDKNISGEKMYKIAEHIGC 80 SVAGVTSDAYALLNYARLSALRHQYTFQEPIAIEDLCRILCDEKQLYTQYGGVRPYGVSFLLVGWDRYYGYQLYSTEPSG 160 DYSAWSAYAIGQNDQVAHSLLKKDWHENMTLEDGMLLALRVLGKTMDTAKIDLGRVEVAVMRKVPASNVDQLLEPFKHHP 240 KTAPQFQILAPSELKPHAERADQAREAEEQAEAERQRQQEQALES 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.14.0310 4 ---MSHR|YD 0.101 . LmjF.14.0310 8 SHRYDSR|TT 0.093 . LmjF.14.0310 17 TFSPEGR|LY 0.099 . LmjF.14.0310 40 VIGVCTK|DG 0.060 . LmjF.14.0310 49 VVLAGEK|MV 0.060 . LmjF.14.0310 64 SENMQDK|NI 0.084 . LmjF.14.0310 70 KNISGEK|MY 0.070 . LmjF.14.0310 73 SGEKMYK|IA 0.086 . LmjF.14.0310 97 ALLNYAR|LS 0.068 . LmjF.14.0310 102 ARLSALR|HQ 0.079 . LmjF.14.0310 118 AIEDLCR|IL 0.085 . LmjF.14.0310 124 RILCDEK|QL 0.063 . LmjF.14.0310 134 TQYGGVR|PY 0.103 . LmjF.14.0310 147 LLVGWDR|YY 0.121 . LmjF.14.0310 182 VAHSLLK|KD 0.062 . LmjF.14.0310 183 AHSLLKK|DW 0.174 . LmjF.14.0310 200 GMLLALR|VL 0.093 . LmjF.14.0310 204 ALRVLGK|TM 0.071 . LmjF.14.0310 210 KTMDTAK|ID 0.059 . LmjF.14.0310 215 AKIDLGR|VE 0.082 . LmjF.14.0310 222 VEVAVMR|KV 0.109 . LmjF.14.0310 223 EVAVMRK|VP 0.073 . LmjF.14.0310 237 QLLEPFK|HH 0.062 . LmjF.14.0310 241 PFKHHPK|TA 0.066 . LmjF.14.0310 255 LAPSELK|PH 0.054 . LmjF.14.0310 260 LKPHAER|AD 0.092 . LmjF.14.0310 265 ERADQAR|EA 0.262 . LmjF.14.0310 275 EQAEAER|QR 0.084 . LmjF.14.0310 277 AEAERQR|QQ 0.143 . ____________________________^_________________

  • Fasta :-

    >LmjF.14.0310 ATGTCTCACCGGTACGACTCCCGCACCACCACCTTCTCCCCTGAGGGTCGCCTCTACCAG GTGGAGTACGCCGTGGAGGCGATTCAGCAGGCCGGCACCGTCATCGGCGTATGCACGAAA GACGGCGTCGTGCTGGCGGGTGAGAAGATGGTGCCGCACCCGCTCTTTGATAGCGAAAAC ATGCAAGACAAGAACATCAGCGGGGAAAAGATGTACAAGATCGCTGAGCACATCGGCTGC AGCGTGGCGGGTGTGACGTCTGATGCGTACGCCTTGCTGAACTACGCTAGGCTTTCGGCA CTGCGCCACCAGTACACCTTCCAGGAGCCGATAGCGATCGAGGATCTCTGCCGCATCCTG TGTGACGAGAAGCAGCTCTACACGCAGTACGGCGGTGTGCGCCCCTACGGTGTCTCCTTC CTGCTTGTTGGATGGGACCGCTATTATGGTTATCAGCTCTACTCCACCGAGCCGAGTGGC GACTACAGCGCCTGGAGCGCGTACGCGATCGGACAGAACGACCAAGTGGCGCACTCACTC TTGAAGAAGGACTGGCACGAGAACATGACGCTAGAGGACGGCATGCTGCTGGCGCTGCGG GTGCTGGGCAAGACGATGGACACGGCAAAGATCGACCTCGGCCGGGTGGAGGTGGCGGTG ATGCGCAAAGTGCCCGCTTCGAACGTTGATCAGCTGCTCGAGCCGTTCAAACACCACCCC AAGACGGCGCCTCAGTTTCAGATTCTCGCCCCTAGTGAACTGAAGCCGCACGCCGAACGC GCCGACCAGGCCAGGGAGGCGGAGGAGCAGGCCGAGGCGGAGCGCCAGCGCCAGCAGGAG CAGGCTCTGGAGTCGTAA
  • Download Fasta

  • Fasta :-

    MSHRYDSRTTTFSPEGRLYQVEYAVEAIQQAGTVIGVCTKDGVVLAGEKMVPHPLFDSEN MQDKNISGEKMYKIAEHIGCSVAGVTSDAYALLNYARLSALRHQYTFQEPIAIEDLCRIL CDEKQLYTQYGGVRPYGVSFLLVGWDRYYGYQLYSTEPSGDYSAWSAYAIGQNDQVAHSL LKKDWHENMTLEDGMLLALRVLGKTMDTAKIDLGRVEVAVMRKVPASNVDQLLEPFKHHP KTAPQFQILAPSELKPHAERADQAREAEEQAEAERQRQQEQALES

  • title: active site
  • coordinates: G32,E48,M50,K70
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.14.0310227 SKVPASNVDQ0.995unspLmjF.14.0310227 SKVPASNVDQ0.995unspLmjF.14.0310227 SKVPASNVDQ0.995unspLmjF.14.03107 SHRYDSRTTT0.994unspLmjF.14.031013 STTTFSPEGR0.99unsp

LmjF.14.0310      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India