LmjF.15.0580 | signal peptidase subunit, putative

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  • Fasta :-

    >LmjF.15.0580 MHSMRQRSCDIFASTVSALLVTAVLTATSTILRDLVLRPRPLVSGVRVSSFSALYHVRSP TLLSPEIPDAAIYYRPSTGSDGHRTAAKQLPSNIEIVDTVDRPEDSEEDRQRKMWQRQRL PKGFELGIRTIDRVVLYLSGSVDFSPCWDWNTKAIYVSFIARFPSKSAPQNDVVLLDAVL RPVSLPAKIARLAKLRRQERRAALPGSLNERATGEAGASPAATMLADEERQQLAAFEQTL RNVEHDHPSVYIDHIDKRLVLNNSFKYFVDAFDDTSLGGNTVEVVLRYQVMSYSGWAPVR EDVLGHQVKVKMPENAVLWKAQQW
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/114 Sequence name : 114 Sequence length : 324 VALUES OF COMPUTED PARAMETERS Coef20 : 4.827 CoefTot : 1.574 ChDiff : 4 ZoneTo : 65 KR : 7 DE : 2 CleavSite : 60 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.012 2.047 0.354 0.657 MesoH : -0.208 0.579 -0.183 0.204 MuHd_075 : 37.482 23.571 8.738 8.516 MuHd_095 : 28.043 25.067 7.542 7.785 MuHd_100 : 30.198 23.523 7.569 8.513 MuHd_105 : 36.489 22.432 8.574 8.858 Hmax_075 : 15.983 22.700 3.389 5.890 Hmax_095 : 17.700 24.325 4.297 6.956 Hmax_100 : 16.500 22.700 3.831 7.020 Hmax_105 : 0.300 22.400 3.581 6.720 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4685 0.5315 DFMC : 0.2479 0.7521 This protein is probably imported in mitochondria. f(Ser) = 0.1692 f(Arg) = 0.1077 CMi = 0.76655 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 324 LmjF.15.0580 MHSMRQRSCDIFASTVSALLVTAVLTATSTILRDLVLRPRPLVSGVRVSSFSALYHVRSPTLLSPEIPDAAIYYRPSTGS 80 DGHRTAAKQLPSNIEIVDTVDRPEDSEEDRQRKMWQRQRLPKGFELGIRTIDRVVLYLSGSVDFSPCWDWNTKAIYVSFI 160 ARFPSKSAPQNDVVLLDAVLRPVSLPAKIARLAKLRRQERRAALPGSLNERATGEAGASPAATMLADEERQQLAAFEQTL 240 RNVEHDHPSVYIDHIDKRLVLNNSFKYFVDAFDDTSLGGNTVEVVLRYQVMSYSGWAPVREDVLGHQVKVKMPENAVLWK 320 AQQW 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.15.0580 5 --MHSMR|QR 0.111 . LmjF.15.0580 7 MHSMRQR|SC 0.214 . LmjF.15.0580 33 ATSTILR|DL 0.080 . LmjF.15.0580 38 LRDLVLR|PR 0.069 . LmjF.15.0580 40 DLVLRPR|PL 0.080 . LmjF.15.0580 47 PLVSGVR|VS 0.067 . LmjF.15.0580 58 SALYHVR|SP 0.096 . LmjF.15.0580 75 DAAIYYR|PS 0.100 . LmjF.15.0580 84 TGSDGHR|TA 0.176 . LmjF.15.0580 88 GHRTAAK|QL 0.077 . LmjF.15.0580 102 IVDTVDR|PE 0.082 . LmjF.15.0580 110 EDSEEDR|QR 0.094 . LmjF.15.0580 112 SEEDRQR|KM 0.099 . LmjF.15.0580 113 EEDRQRK|MW 0.241 . LmjF.15.0580 117 QRKMWQR|QR 0.105 . LmjF.15.0580 119 KMWQRQR|LP 0.078 . LmjF.15.0580 122 QRQRLPK|GF 0.285 . LmjF.15.0580 129 GFELGIR|TI 0.090 . LmjF.15.0580 133 GIRTIDR|VV 0.093 . LmjF.15.0580 153 CWDWNTK|AI 0.065 . LmjF.15.0580 162 YVSFIAR|FP 0.154 . LmjF.15.0580 166 IARFPSK|SA 0.102 . LmjF.15.0580 181 LLDAVLR|PV 0.091 . LmjF.15.0580 188 PVSLPAK|IA 0.068 . LmjF.15.0580 191 LPAKIAR|LA 0.114 . LmjF.15.0580 194 KIARLAK|LR 0.153 . LmjF.15.0580 196 ARLAKLR|RQ 0.077 . LmjF.15.0580 197 RLAKLRR|QE 0.125 . LmjF.15.0580 200 KLRRQER|RA 0.190 . LmjF.15.0580 201 LRRQERR|AA 0.272 . LmjF.15.0580 211 PGSLNER|AT 0.141 . LmjF.15.0580 230 MLADEER|QQ 0.105 . LmjF.15.0580 241 AFEQTLR|NV 0.100 . LmjF.15.0580 257 YIDHIDK|RL 0.052 . LmjF.15.0580 258 IDHIDKR|LV 0.188 . LmjF.15.0580 266 VLNNSFK|YF 0.083 . LmjF.15.0580 287 TVEVVLR|YQ 0.086 . LmjF.15.0580 300 SGWAPVR|ED 0.078 . LmjF.15.0580 309 VLGHQVK|VK 0.067 . LmjF.15.0580 311 GHQVKVK|MP 0.083 . LmjF.15.0580 320 ENAVLWK|AQ 0.069 . ____________________________^_________________

  • Fasta :-

    >LmjF.15.0580 ATGCACTCGATGCGACAACGCTCCTGCGACATCTTCGCCTCGACCGTGTCGGCCTTACTC GTCACGGCAGTTCTAACGGCCACCTCGACGATTTTACGAGACCTGGTGTTGCGCCCGCGT CCGCTGGTCTCGGGCGTGCGTGTGTCGAGCTTCTCGGCACTGTACCACGTGCGCAGCCCT ACGCTGCTGTCTCCGGAGATCCCTGATGCGGCCATCTACTACCGCCCCAGCACCGGCAGC GACGGCCACAGGACCGCGGCAAAGCAGCTTCCGTCGAATATCGAGATCGTGGACACGGTG GATCGGCCTGAGGACAGCGAGGAAGATCGCCAGCGCAAGATGTGGCAGCGGCAGCGCTTA CCGAAAGGCTTCGAACTCGGCATACGCACCATCGATCGCGTCGTGCTGTATCTTTCTGGC TCGGTGGACTTCTCTCCCTGCTGGGACTGGAACACGAAAGCCATCTACGTCTCCTTCATC GCGCGGTTTCCGTCGAAGTCGGCGCCTCAGAACGACGTCGTCCTGCTCGATGCGGTACTG CGCCCGGTGTCGCTGCCAGCGAAGATCGCGCGGTTGGCGAAGCTGCGTCGCCAAGAGCGG CGAGCCGCGCTACCAGGAAGCCTCAACGAGAGAGCAACGGGGGAGGCCGGGGCCTCTCCC GCCGCGACGATGTTGGCAGACGAAGAGCGGCAGCAGCTCGCTGCCTTTGAGCAGACTCTG CGCAATGTCGAACACGATCACCCCTCCGTGTACATTGACCATATCGACAAGCGGCTCGTG TTGAATAACTCATTCAAGTACTTTGTGGACGCCTTTGACGACACCTCTCTCGGAGGCAAC ACAGTTGAGGTGGTGCTGCGCTACCAGGTGATGAGCTACTCCGGCTGGGCACCCGTGCGG GAGGATGTTCTTGGGCACCAGGTAAAAGTAAAGATGCCAGAGAATGCTGTGCTGTGGAAG GCGCAGCAGTGGTGA
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  • Fasta :-

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IDSitePeptideScoreMethod
LmjF.15.0580106 SRPEDSEEDR0.996unsp

LmjF.15.0580      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India