LmjF.18.0610 | ATP-dependent zinc metallopeptidase, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005524      GO:0004222      

  • Computed_GO_Functions:  ATP binding      metalloendopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.18.0610OTHER0.9989490.0008700.000181
No Results

  • Fasta :-

    >LmjF.18.0610 MSFTDTQSPEYQRGVNDAERHRRATEENWIRPALGPIVWLGVPFLLAWMYMRRVSLGSPL GSGSASGSGNPFTSMMEQMMPIKKRQFRVDVKGTRFADVVGLPEAKAEVRQYVDFLTEPN KFTRLGARLPKGCLLTGEPGTGKTLLAKAVAGEANVAFFSCNGADFIELIGGSGPKRVRE LFEEARAAAPAIIFIDEIDAIGSRAGKQGGSVSSEENRTINQLLAELDGLSTSADPIVVL AATNFQDNIDKALLREGRFDRKIAIEMPDLSARRELFEHYLNRICTGDPNGRTKDEGGKE LALDTSVSNKALADQLADLTPGLSPATVATVVNEAALQSGIAGKPLVQLPDLLEALDNTL MGRKHRNRQSDQSARRTAIHEAGHALTAWMLPIVQKVLKISVTPRGHAMGYTQRAGTEFH EYQTNATLFADMVVMLGGRAAEEVMLGDVSAGAMDDLQRATDVALKQMLAFGMSTHTGLL SYHPDYTRAGRDFTTFSNEAQYRAELEAQKLLAAAHSTAVDIVKRHKDKMEIMVKALLEK KELSTRDIEELWGPRPSTPTVEDIVQKVIEVTGSYAEITATVGPAAAAVATPSIAGVY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/745 Sequence name : 745 Sequence length : 598 VALUES OF COMPUTED PARAMETERS Coef20 : 3.413 CoefTot : 0.112 ChDiff : -7 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.071 1.800 0.228 0.818 MesoH : -0.368 0.384 -0.343 0.227 MuHd_075 : 7.706 7.848 3.529 3.010 MuHd_095 : 31.047 15.705 7.429 6.009 MuHd_100 : 29.132 15.091 6.921 5.689 MuHd_105 : 24.310 12.599 5.930 4.767 Hmax_075 : -4.400 -2.333 -2.548 0.817 Hmax_095 : 5.300 2.900 -0.708 2.760 Hmax_100 : 5.300 2.900 -0.708 2.760 Hmax_105 : 4.900 1.050 -0.978 1.768 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8406 0.1594 DFMC : 0.8700 0.1300
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 598 LmjF.18.0610 MSFTDTQSPEYQRGVNDAERHRRATEENWIRPALGPIVWLGVPFLLAWMYMRRVSLGSPLGSGSASGSGNPFTSMMEQMM 80 PIKKRQFRVDVKGTRFADVVGLPEAKAEVRQYVDFLTEPNKFTRLGARLPKGCLLTGEPGTGKTLLAKAVAGEANVAFFS 160 CNGADFIELIGGSGPKRVRELFEEARAAAPAIIFIDEIDAIGSRAGKQGGSVSSEENRTINQLLAELDGLSTSADPIVVL 240 AATNFQDNIDKALLREGRFDRKIAIEMPDLSARRELFEHYLNRICTGDPNGRTKDEGGKELALDTSVSNKALADQLADLT 320 PGLSPATVATVVNEAALQSGIAGKPLVQLPDLLEALDNTLMGRKHRNRQSDQSARRTAIHEAGHALTAWMLPIVQKVLKI 400 SVTPRGHAMGYTQRAGTEFHEYQTNATLFADMVVMLGGRAAEEVMLGDVSAGAMDDLQRATDVALKQMLAFGMSTHTGLL 480 SYHPDYTRAGRDFTTFSNEAQYRAELEAQKLLAAAHSTAVDIVKRHKDKMEIMVKALLEKKELSTRDIEELWGPRPSTPT 560 VEDIVQKVIEVTGSYAEITATVGPAAAAVATPSIAGVY 640 ......................P......................................................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ...................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmjF.18.0610 13 QSPEYQR|GV 0.172 . LmjF.18.0610 20 GVNDAER|HR 0.092 . LmjF.18.0610 22 NDAERHR|RA 0.095 . LmjF.18.0610 23 DAERHRR|AT 0.544 *ProP* LmjF.18.0610 31 TEENWIR|PA 0.097 . LmjF.18.0610 52 LAWMYMR|RV 0.109 . LmjF.18.0610 53 AWMYMRR|VS 0.115 . LmjF.18.0610 83 EQMMPIK|KR 0.056 . LmjF.18.0610 84 QMMPIKK|RQ 0.082 . LmjF.18.0610 85 MMPIKKR|QF 0.215 . LmjF.18.0610 88 IKKRQFR|VD 0.358 . LmjF.18.0610 92 QFRVDVK|GT 0.066 . LmjF.18.0610 95 VDVKGTR|FA 0.113 . LmjF.18.0610 106 VGLPEAK|AE 0.058 . LmjF.18.0610 110 EAKAEVR|QY 0.090 . LmjF.18.0610 121 FLTEPNK|FT 0.062 . LmjF.18.0610 124 EPNKFTR|LG 0.090 . LmjF.18.0610 128 FTRLGAR|LP 0.085 . LmjF.18.0610 131 LGARLPK|GC 0.104 . LmjF.18.0610 143 GEPGTGK|TL 0.058 . LmjF.18.0610 148 GKTLLAK|AV 0.078 . LmjF.18.0610 176 IGGSGPK|RV 0.072 . LmjF.18.0610 177 GGSGPKR|VR 0.168 . LmjF.18.0610 179 SGPKRVR|EL 0.091 . LmjF.18.0610 186 ELFEEAR|AA 0.104 . LmjF.18.0610 204 IDAIGSR|AG 0.090 . LmjF.18.0610 207 IGSRAGK|QG 0.159 . LmjF.18.0610 218 VSSEENR|TI 0.120 . LmjF.18.0610 251 FQDNIDK|AL 0.060 . LmjF.18.0610 255 IDKALLR|EG 0.072 . LmjF.18.0610 258 ALLREGR|FD 0.245 . LmjF.18.0610 261 REGRFDR|KI 0.303 . LmjF.18.0610 262 EGRFDRK|IA 0.086 . LmjF.18.0610 273 MPDLSAR|RE 0.069 . LmjF.18.0610 274 PDLSARR|EL 0.100 . LmjF.18.0610 283 FEHYLNR|IC 0.092 . LmjF.18.0610 292 TGDPNGR|TK 0.097 . LmjF.18.0610 294 DPNGRTK|DE 0.108 . LmjF.18.0610 299 TKDEGGK|EL 0.057 . LmjF.18.0610 310 DTSVSNK|AL 0.091 . LmjF.18.0610 344 QSGIAGK|PL 0.068 . LmjF.18.0610 363 DNTLMGR|KH 0.073 . LmjF.18.0610 364 NTLMGRK|HR 0.067 . LmjF.18.0610 366 LMGRKHR|NR 0.210 . LmjF.18.0610 368 GRKHRNR|QS 0.168 . LmjF.18.0610 375 QSDQSAR|RT 0.108 . LmjF.18.0610 376 SDQSARR|TA 0.177 . LmjF.18.0610 396 MLPIVQK|VL 0.062 . LmjF.18.0610 399 IVQKVLK|IS 0.063 . LmjF.18.0610 405 KISVTPR|GH 0.146 . LmjF.18.0610 414 AMGYTQR|AG 0.078 . LmjF.18.0610 439 VVMLGGR|AA 0.099 . LmjF.18.0610 459 AMDDLQR|AT 0.122 . LmjF.18.0610 466 ATDVALK|QM 0.057 . LmjF.18.0610 488 YHPDYTR|AG 0.071 . LmjF.18.0610 491 DYTRAGR|DF 0.224 . LmjF.18.0610 503 SNEAQYR|AE 0.101 . LmjF.18.0610 510 AELEAQK|LL 0.059 . LmjF.18.0610 524 TAVDIVK|RH 0.066 . LmjF.18.0610 525 AVDIVKR|HK 0.255 . LmjF.18.0610 527 DIVKRHK|DK 0.070 . LmjF.18.0610 529 VKRHKDK|ME 0.072 . LmjF.18.0610 535 KMEIMVK|AL 0.059 . LmjF.18.0610 540 VKALLEK|KE 0.056 . LmjF.18.0610 541 KALLEKK|EL 0.082 . LmjF.18.0610 546 KKELSTR|DI 0.110 . LmjF.18.0610 555 EELWGPR|PS 0.072 . LmjF.18.0610 567 VEDIVQK|VI 0.066 . ____________________________^_________________

  • Fasta :-

    >LmjF.18.0610 ATGTCCTTCACCGATACGCAGAGCCCCGAATACCAACGGGGCGTCAACGACGCGGAGCGG CATCGCAGGGCAACAGAGGAAAACTGGATACGGCCCGCCCTCGGCCCCATCGTATGGCTC GGCGTGCCCTTCTTGCTGGCATGGATGTATATGCGCCGTGTCTCGCTAGGCAGTCCGCTC GGCAGCGGATCCGCCAGCGGCAGCGGCAACCCTTTCACGAGCATGATGGAGCAGATGATG CCGATTAAGAAGCGGCAGTTTCGCGTCGACGTAAAGGGTACAAGGTTCGCCGACGTTGTC GGCCTCCCGGAGGCGAAGGCGGAGGTGCGACAGTACGTCGACTTCCTCACAGAACCGAAC AAGTTCACTCGGCTCGGGGCGCGACTGCCGAAGGGGTGTCTGCTGACGGGGGAACCCGGC ACAGGCAAGACACTGCTGGCCAAGGCCGTCGCCGGTGAAGCGAATGTGGCTTTCTTCAGC TGCAACGGTGCGGACTTTATTGAGCTCATAGGTGGGAGTGGCCCCAAGCGGGTGCGCGAG CTCTTCGAGGAAGCGCGGGCGGCCGCGCCGGCGATCATCTTCATCGACGAAATCGACGCC ATCGGCTCACGCGCTGGCAAGCAGGGCGGCTCCGTCAGCAGCGAGGAGAACCGCACCATC AACCAGCTGCTCGCCGAGTTGGATGGGCTCAGCACGAGCGCCGACCCCATTGTTGTGCTG GCGGCCACGAATTTCCAGGACAACATCGACAAGGCCCTGCTGCGAGAGGGCCGCTTCGAC CGAAAAATTGCCATCGAGATGCCCGACCTCTCCGCCCGTCGCGAGCTCTTCGAGCACTAT CTCAACCGCATCTGCACCGGTGACCCTAACGGCCGTACAAAGGACGAGGGCGGCAAGGAG CTGGCGCTAGACACCAGCGTGAGCAACAAGGCGCTGGCAGATCAGCTGGCGGACCTCACG CCAGGGCTGTCGCCGGCCACGGTAGCCACAGTCGTAAACGAGGCGGCACTGCAGAGCGGA ATAGCCGGTAAGCCGCTCGTGCAGCTGCCGGATCTGCTGGAGGCACTGGACAACACGCTG ATGGGCCGCAAGCACCGCAATCGCCAGAGCGACCAATCGGCTCGCCGCACCGCGATTCAC GAAGCCGGCCACGCCCTGACGGCATGGATGCTACCGATTGTGCAGAAAGTTTTGAAGATC AGCGTCACCCCGCGCGGGCACGCGATGGGCTACACACAGCGCGCCGGGACTGAGTTTCAC GAATATCAAACAAACGCGACGCTCTTCGCCGACATGGTGGTCATGCTCGGCGGCCGCGCC GCAGAGGAGGTGATGCTAGGCGACGTGTCGGCCGGTGCGATGGACGACTTGCAGCGGGCC ACGGATGTGGCGCTCAAGCAGATGCTGGCGTTTGGCATGAGCACACACACGGGGCTGCTG TCGTACCACCCTGATTACACTCGAGCAGGGCGTGACTTCACGACTTTTTCCAACGAAGCC CAGTACCGCGCCGAACTGGAGGCGCAGAAGCTGCTTGCAGCCGCCCACTCCACCGCCGTG GACATCGTCAAGCGTCACAAGGACAAAATGGAGATTATGGTGAAGGCACTACTGGAGAAG AAGGAGCTGTCGACTCGCGACATTGAGGAACTCTGGGGCCCGCGGCCGTCGACGCCGACG GTGGAGGACATTGTGCAAAAGGTCATCGAGGTGACCGGCAGCTACGCCGAGATTACCGCG ACCGTTGGCCCTGCGGCGGCAGCGGTGGCGACACCGAGCATTGCGGGAGTGTATTAG
  • Download Fasta

  • Fasta :-

    MSFTDTQSPEYQRGVNDAERHRRATEENWIRPALGPIVWLGVPFLLAWMYMRRVSLGSPL GSGSASGSGNPFTSMMEQMMPIKKRQFRVDVKGTRFADVVGLPEAKAEVRQYVDFLTEPN KFTRLGARLPKGCLLTGEPGTGKTLLAKAVAGEANVAFFSCNGADFIELIGGSGPKRVRE LFEEARAAAPAIIFIDEIDAIGSRAGKQGGSVSSEENRTINQLLAELDGLSTSADPIVVL AATNFQDNIDKALLREGRFDRKIAIEMPDLSARRELFEHYLNRICTGDPNGRTKDEGGKE LALDTSVSNKALADQLADLTPGLSPATVATVVNEAALQSGIAGKPLVQLPDLLEALDNTL MGRKHRNRQSDQSARRTAIHEAGHALTAWMLPIVQKVLKISVTPRGHAMGYTQRAGTEFH EYQTNATLFADMVVMLGGRAAEEVMLGDVSAGAMDDLQRATDVALKQMLAFGMSTHTGLL SYHPDYTRAGRDFTTFSNEAQYRAELEAQKLLAAAHSTAVDIVKRHKDKMEIMVKALLEK KELSTRDIEELWGPRPSTPTVEDIVQKVIEVTGSYAEITATVGPAAAAVATPSIAGVY

  • title: ATP binding site
  • coordinates: E138,P139,G140,T141,G142,K143,T144,L145,D196,N244
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.18.0610213 SGGSVSSEEN0.993unspLmjF.18.0610213 SGGSVSSEEN0.993unspLmjF.18.0610213 SGGSVSSEEN0.993unspLmjF.18.0610373 SQSDQSARRT0.996unspLmjF.18.0610544 SKKELSTRDI0.998unspLmjF.18.06108 STDTQSPEYQ0.991unspLmjF.18.061055 SMRRVSLGSP0.994unsp

LmjF.18.0610      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India