LmjF.19.0130 | Der1-like family, putative

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_IDPredictionOTHERSPmTPCS_Position
LmjF.19.0130OTHER0.9996240.0001270.000249
No Results

  • Fasta :-

    >LmjF.19.0130 MSQNFGDWFNQLGLVTRASLVASVGLSAACSLNVMGVGSVILTSEAITSLQVWRFVTAAL YLGNFSFPWLMTVAMFVTYVKNNEESDFKGKTADMAYMFLLLLGVLSSAGLFFNVYVTSF SFLMALCWIFCKRHPEQELTLFGFSFRSAVFPWVLMALHLVMGQGLLADILGIVAGHAYV FFKDVLPVSHNQRWLETPMWLRHQFPQPTHRVASFGPEVHPYDPRFQAAWRGEAQQRSSG SHNWGRGQTLGSS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/483 Sequence name : 483 Sequence length : 253 VALUES OF COMPUTED PARAMETERS Coef20 : 4.027 CoefTot : -0.294 ChDiff : 2 ZoneTo : 83 KR : 3 DE : 2 CleavSite : 56 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.235 2.088 0.434 0.789 MesoH : 1.042 1.241 0.035 0.498 MuHd_075 : 25.998 21.092 6.333 6.583 MuHd_095 : 23.935 16.256 5.780 4.858 MuHd_100 : 36.425 19.295 8.406 7.065 MuHd_105 : 42.471 24.006 10.116 8.566 Hmax_075 : 11.400 19.500 2.318 5.565 Hmax_095 : 11.900 19.200 -0.572 5.267 Hmax_100 : 19.300 15.600 2.337 6.000 Hmax_105 : 18.700 14.117 2.329 5.870 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7780 0.2220 DFMC : 0.4523 0.5477 This protein is probably imported in chloroplast. f(Ser) = 0.1084 f(Arg) = 0.0241 CMi = 1.04530 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 253 LmjF.19.0130 MSQNFGDWFNQLGLVTRASLVASVGLSAACSLNVMGVGSVILTSEAITSLQVWRFVTAALYLGNFSFPWLMTVAMFVTYV 80 KNNEESDFKGKTADMAYMFLLLLGVLSSAGLFFNVYVTSFSFLMALCWIFCKRHPEQELTLFGFSFRSAVFPWVLMALHL 160 VMGQGLLADILGIVAGHAYVFFKDVLPVSHNQRWLETPMWLRHQFPQPTHRVASFGPEVHPYDPRFQAAWRGEAQQRSSG 240 SHNWGRGQTLGSS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.19.0130 17 QLGLVTR|AS 0.085 . LmjF.19.0130 54 TSLQVWR|FV 0.195 . LmjF.19.0130 81 MFVTYVK|NN 0.059 . LmjF.19.0130 89 NEESDFK|GK 0.062 . LmjF.19.0130 91 ESDFKGK|TA 0.084 . LmjF.19.0130 132 LCWIFCK|RH 0.061 . LmjF.19.0130 133 CWIFCKR|HP 0.238 . LmjF.19.0130 147 LFGFSFR|SA 0.115 . LmjF.19.0130 183 HAYVFFK|DV 0.118 . LmjF.19.0130 193 PVSHNQR|WL 0.111 . LmjF.19.0130 202 ETPMWLR|HQ 0.083 . LmjF.19.0130 211 FPQPTHR|VA 0.135 . LmjF.19.0130 225 VHPYDPR|FQ 0.086 . LmjF.19.0130 231 RFQAAWR|GE 0.105 . LmjF.19.0130 237 RGEAQQR|SS 0.161 . LmjF.19.0130 246 GSHNWGR|GQ 0.106 . ____________________________^_________________

  • Fasta :-

    >LmjF.19.0130 ATGTCGCAGAACTTTGGCGACTGGTTCAATCAGCTGGGCCTCGTCACCCGTGCCTCTCTC GTCGCATCTGTGGGCCTGTCCGCCGCCTGCTCCCTCAACGTGATGGGTGTCGGCTCGGTT ATCCTCACCTCTGAAGCCATCACCTCGCTGCAGGTGTGGCGCTTCGTGACAGCCGCCCTC TACCTCGGCAATTTCTCTTTCCCATGGCTCATGACGGTTGCAATGTTTGTCACGTACGTC AAGAACAACGAGGAGAGCGACTTCAAAGGCAAGACGGCAGACATGGCGTACATGTTTCTG CTGCTGTTGGGTGTCCTCTCCTCTGCTGGCCTCTTTTTTAACGTGTACGTGACGAGTTTC TCGTTCCTAATGGCGCTGTGCTGGATTTTCTGCAAGCGACACCCGGAGCAGGAGCTGACG CTCTTTGGATTCTCCTTCCGCTCGGCTGTGTTTCCGTGGGTGTTGATGGCACTGCACCTC GTCATGGGGCAGGGGCTGCTTGCTGATATTCTAGGCATAGTGGCCGGACACGCCTACGTA TTCTTCAAGGATGTTCTTCCAGTTTCACACAATCAGCGGTGGCTGGAGACTCCGATGTGG CTGCGGCACCAGTTCCCGCAGCCGACGCACCGCGTCGCCTCCTTTGGCCCTGAGGTGCAC CCGTACGACCCTCGCTTTCAGGCGGCATGGCGGGGTGAAGCTCAGCAGAGGAGCAGCGGC TCGCACAACTGGGGACGTGGCCAGACGCTCGGTAGCAGCTGA
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  • Fasta :-

    MSQNFGDWFNQLGLVTRASLVASVGLSAACSLNVMGVGSVILTSEAITSLQVWRFVTAAL YLGNFSFPWLMTVAMFVTYVKNNEESDFKGKTADMAYMFLLLLGVLSSAGLFFNVYVTSF SFLMALCWIFCKRHPEQELTLFGFSFRSAVFPWVLMALHLVMGQGLLADILGIVAGHAYV FFKDVLPVSHNQRWLETPMWLRHQFPQPTHRVASFGPEVHPYDPRFQAAWRGEAQQRSSG SHNWGRGQTLGSS

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LmjF.19.0130      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India