LmjF.20.1560 | amidohydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.20.1560OTHER0.9996890.0002310.000080
No Results

  • Fasta :-

    >LmjF.20.1560 MTSPISALVQEVHPEALQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNS VVADLRGGAGEGPMYALRADMDALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKV LCQMRDRIRGTVRFVFQHAEEVVPSGAKQLVGLGVLDGVSMIFGLHVAAEYPVGTISTRP GTLCGACDDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALKAPVLSVT QIVGGTGAYNVIPDTVRMRGTLRCLDRDTQARVPSLMEEIIAGITKAHGAQYELSWLEPN IVTYNDAKAYEVVKSAAEEMLGKDAFVVKEEPMFGVEDFSEYQAVIPGCYALLGAKPYGD GKTPLAHNCMFRVNEDAFAHGIGLHVNVIRRLLIDS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/37 Sequence name : 37 Sequence length : 396 VALUES OF COMPUTED PARAMETERS Coef20 : 3.822 CoefTot : 0.079 ChDiff : -14 ZoneTo : 10 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.271 1.665 0.153 0.669 MesoH : -0.051 0.728 -0.119 0.348 MuHd_075 : 13.393 9.528 3.275 2.199 MuHd_095 : 27.458 25.860 7.643 6.745 MuHd_100 : 22.726 21.735 6.694 5.299 MuHd_105 : 14.139 14.331 4.687 3.036 Hmax_075 : 13.200 13.900 2.299 4.310 Hmax_095 : 15.900 18.800 2.988 6.080 Hmax_100 : 17.300 19.700 3.356 5.910 Hmax_105 : 13.650 15.400 2.891 4.655 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8640 0.1360 DFMC : 0.9170 0.0830
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 396 LmjF.20.1560 MTSPISALVQEVHPEALQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNSVVADLRGGAGEGPMYALRAD 80 MDALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKVLCQMRDRIRGTVRFVFQHAEEVVPSGAKQLVGLGVLDGVS 160 MIFGLHVAAEYPVGTISTRPGTLCGACDDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALKAPVLSVT 240 QIVGGTGAYNVIPDTVRMRGTLRCLDRDTQARVPSLMEEIIAGITKAHGAQYELSWLEPNIVTYNDAKAYEVVKSAAEEM 320 LGKDAFVVKEEPMFGVEDFSEYQAVIPGCYALLGAKPYGDGKTPLAHNCMFRVNEDAFAHGIGLHVNVIRRLLIDS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.20.1560 20 PEALQWR|RH 0.088 . LmjF.20.1560 21 EALQWRR|HI 0.144 . LmjF.20.1560 54 PAPLDIR|RL 0.065 . LmjF.20.1560 55 APLDIRR|LT 0.104 . LmjF.20.1560 66 SVVADLR|GG 0.098 . LmjF.20.1560 78 GPMYALR|AD 0.116 . LmjF.20.1560 97 GEPFSSK|RP 0.067 . LmjF.20.1560 98 EPFSSKR|PG 0.139 . LmjF.20.1560 119 MLLGAVK|VL 0.060 . LmjF.20.1560 125 KVLCQMR|DR 0.097 . LmjF.20.1560 127 LCQMRDR|IR 0.107 . LmjF.20.1560 129 QMRDRIR|GT 0.097 . LmjF.20.1560 133 RIRGTVR|FV 0.174 . LmjF.20.1560 148 VVPSGAK|QL 0.055 . LmjF.20.1560 179 VGTISTR|PG 0.073 . LmjF.20.1560 195 DFDIVIR|GA 0.126 . LmjF.20.1560 227 LQSVVSR|RV 0.166 . LmjF.20.1560 228 QSVVSRR|VS 0.124 . LmjF.20.1560 233 RRVSALK|AP 0.063 . LmjF.20.1560 257 VIPDTVR|MR 0.079 . LmjF.20.1560 259 PDTVRMR|GT 0.091 . LmjF.20.1560 263 RMRGTLR|CL 0.090 . LmjF.20.1560 267 TLRCLDR|DT 0.153 . LmjF.20.1560 272 DRDTQAR|VP 0.099 . LmjF.20.1560 286 IIAGITK|AH 0.076 . LmjF.20.1560 308 VTYNDAK|AY 0.073 . LmjF.20.1560 314 KAYEVVK|SA 0.090 . LmjF.20.1560 323 AEEMLGK|DA 0.077 . LmjF.20.1560 329 KDAFVVK|EE 0.062 . LmjF.20.1560 356 YALLGAK|PY 0.065 . LmjF.20.1560 362 KPYGDGK|TP 0.061 . LmjF.20.1560 372 AHNCMFR|VN 0.137 . LmjF.20.1560 390 LHVNVIR|RL 0.074 . LmjF.20.1560 391 HVNVIRR|LL 0.179 . ____________________________^_________________

  • Fasta :-

    >LmjF.20.1560 ATGACGTCACCGATAAGCGCTCTGGTTCAGGAGGTGCATCCGGAGGCTCTGCAGTGGCGC CGCCACATCCACGAGTATCCATATGTTGCGTATGAGGAGCAGCCCACCGCCGACTACGTG GCGGACGTCCTCAGCAGCATGCCCGCACCGCTGGACATTCGCCGGCTGACGCCGAACAGC GTCGTGGCGGACCTGCGGGGTGGCGCTGGCGAGGGCCCCATGTACGCCCTGCGCGCCGAC ATGGATGCGCTGCCGCTGCAAGAGGAGAGCGGCGAGCCCTTCAGCTCGAAGCGGCCAGGC GTGATGCACGCATGTGGCCACGATGCCCACACGGCGATGCTGCTTGGGGCGGTGAAGGTG CTGTGCCAGATGCGCGACCGCATCCGTGGGACCGTTCGCTTTGTTTTCCAGCACGCCGAG GAGGTGGTCCCGAGCGGCGCGAAGCAGCTGGTGGGCCTTGGTGTGCTGGACGGCGTGTCC ATGATCTTTGGGCTGCACGTCGCTGCAGAGTACCCTGTCGGCACCATCTCGACCCGACCG GGCACCCTCTGCGGTGCGTGCGACGACTTTGACATTGTGATCCGCGGCGCTGGCGGGCAT GCCTCGCAGCCGGAGCTGTGTGTCGACCCCATTCTCATTGCCTCCGAGGTCGTGGCAAAC CTCCAGTCCGTTGTATCGCGCCGCGTGAGCGCGCTGAAGGCTCCTGTACTGAGCGTAACG CAGATCGTGGGCGGCACCGGTGCGTACAACGTGATTCCGGATACCGTGCGCATGCGCGGC ACACTGCGCTGCCTCGACCGCGACACTCAGGCTCGGGTGCCCTCTCTGATGGAGGAGATC ATCGCCGGCATCACAAAGGCACACGGCGCCCAGTACGAGCTGAGCTGGCTGGAGCCCAAC ATCGTGACGTACAACGACGCGAAGGCGTACGAAGTGGTGAAGAGCGCAGCTGAGGAAATG CTTGGTAAAGATGCGTTTGTTGTGAAGGAGGAGCCGATGTTCGGCGTGGAGGACTTCTCC GAGTACCAGGCAGTGATCCCGGGCTGTTATGCTTTACTCGGAGCGAAGCCGTACGGAGAT GGGAAAACCCCACTGGCACACAACTGCATGTTCAGAGTCAACGAGGACGCCTTTGCGCAC GGGATTGGGCTGCACGTGAATGTCATCCGCCGTCTGCTGATTGATTCGTAA
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  • Fasta :-

    MTSPISALVQEVHPEALQWRRHIHEYPYVAYEEQPTADYVADVLSSMPAPLDIRRLTPNS VVADLRGGAGEGPMYALRADMDALPLQEESGEPFSSKRPGVMHACGHDAHTAMLLGAVKV LCQMRDRIRGTVRFVFQHAEEVVPSGAKQLVGLGVLDGVSMIFGLHVAAEYPVGTISTRP GTLCGACDDFDIVIRGAGGHASQPELCVDPILIASEVVANLQSVVSRRVSALKAPVLSVT QIVGGTGAYNVIPDTVRMRGTLRCLDRDTQARVPSLMEEIIAGITKAHGAQYELSWLEPN IVTYNDAKAYEVVKSAAEEMLGKDAFVVKEEPMFGVEDFSEYQAVIPGCYALLGAKPYGD GKTPLAHNCMFRVNEDAFAHGIGLHVNVIRRLLIDS

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.20.1560230 SSRRVSALKA0.992unspLmjF.20.1560230 SSRRVSALKA0.992unspLmjF.20.1560230 SSRRVSALKA0.992unspLmjF.20.156057 TIRRLTPNSV0.99unspLmjF.20.156095 SGEPFSSKRP0.992unsp

LmjF.20.1560      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India