LmjF.21.0400 | Peptidase C19, ubiquitin carboxyl-terminal hydrolase, putative

UniProt_ID: Q4QCH5

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0036459
Computed_GO_Functions: thiol-dependent ubiquitinyl hydrolase activity
Computed_GO_Process_IDs: GO:0016579
Computed_GO_Processes: protein deubiquitination
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs: GO:0004197
Curated_GO_Functions: cysteine-type endopeptidase activity
Curated_GO_Processes: ubiquitin-dependent protein catabolic process

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	LmjF.21.0400	OTHER	0.999997	0.000003	0.000000

No Results

Fasta :-
>LmjF.21.0400 MGNETSKPRGTASASNPFRQNSQSEAAVGFGGAAAATEKAGSPNAASTASSAHSRPMALS AETPPLRSASGATDTVGSSVPRYVDAKSMVYTLPCFTPDRSLSSPTSGGAGARSQPIAIQ MAASQQLPRMSSSSDFRVGAPSSPLSPSRRHFSTANLSNTMEIPTYNTSTPIAVEDLSCS SPVLKSYRQHSFSHSKRDACLADSPTSPGMSVHGGAFLSTGASEAPVAMSLSTSFSSGAG GGSTSTAIHTKFLEITGHPLGLENYGNTCYCNSVIQLIYHCAPLRLRLLELYHVYLTKKG KPGFEEDTVLFQLCSLIAVMHKSNNRTKDKYPREKIAPKDLLNCVRAKNEDFNNDMQQDA HEFTMFLLNDIWDTEQRIMADPANVNLFLKYEASLKKKGSLSFSWKHSKDKHISSHSHKE NRLDKTTLAAATNSDVGTNGGKAVDAQQPFSGELTPLQVILQGQFGSLTACLECENVTAR EEVFMDLSLETAQGTSLLRCLDHFGDPEYFWGKNKLRCEECKMPVRAAKTIHVQQLPQYA LLIHLKRFQYDVEKQIFTKKADHVALPMQMDVEEYLTDPEVIEQSLRNKQARTQKNSGVD AGSSTSGHNSSGSGQKDEANATSSPDTFKPASEEVRRKLRGVARHKARFELTGFVAHIGE GPNSGHYFTCVRYGPQLWRRFDDETVSTMAERDVKQYFGVPSDAVGVVTTTAYILLYERV A
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/443 Sequence name : 443 Sequence length : 721 VALUES OF COMPUTED PARAMETERS Coef20 : 3.684 CoefTot : -0.952 ChDiff : 3 ZoneTo : 24 KR : 3 DE : 1 CleavSite : 21 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.441 1.341 0.135 0.522 MesoH : 0.495 0.300 -0.130 0.289 MuHd_075 : 17.234 8.356 4.033 2.800 MuHd_095 : 22.839 11.681 6.184 4.437 MuHd_100 : 22.204 11.809 5.003 5.184 MuHd_105 : 25.453 13.278 5.803 5.940 Hmax_075 : -0.233 -0.233 0.282 0.360 Hmax_095 : 2.500 -2.000 -1.823 1.280 Hmax_100 : -1.300 -3.200 -2.827 0.090 Hmax_105 : 8.750 0.817 -0.091 1.785 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9608 0.0392 DFMC : 0.9279 0.0721

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 721 LmjF.21.0400 MGNETSKPRGTASASNPFRQNSQSEAAVGFGGAAAATEKAGSPNAASTASSAHSRPMALSAETPPLRSASGATDTVGSSV 80 PRYVDAKSMVYTLPCFTPDRSLSSPTSGGAGARSQPIAIQMAASQQLPRMSSSSDFRVGAPSSPLSPSRRHFSTANLSNT 160 MEIPTYNTSTPIAVEDLSCSSPVLKSYRQHSFSHSKRDACLADSPTSPGMSVHGGAFLSTGASEAPVAMSLSTSFSSGAG 240 GGSTSTAIHTKFLEITGHPLGLENYGNTCYCNSVIQLIYHCAPLRLRLLELYHVYLTKKGKPGFEEDTVLFQLCSLIAVM 320 HKSNNRTKDKYPREKIAPKDLLNCVRAKNEDFNNDMQQDAHEFTMFLLNDIWDTEQRIMADPANVNLFLKYEASLKKKGS 400 LSFSWKHSKDKHISSHSHKENRLDKTTLAAATNSDVGTNGGKAVDAQQPFSGELTPLQVILQGQFGSLTACLECENVTAR 480 EEVFMDLSLETAQGTSLLRCLDHFGDPEYFWGKNKLRCEECKMPVRAAKTIHVQQLPQYALLIHLKRFQYDVEKQIFTKK 560 ADHVALPMQMDVEEYLTDPEVIEQSLRNKQARTQKNSGVDAGSSTSGHNSSGSGQKDEANATSSPDTFKPASEEVRRKLR 640 GVARHKARFELTGFVAHIGEGPNSGHYFTCVRYGPQLWRRFDDETVSTMAERDVKQYFGVPSDAVGVVTTTAYILLYERV 720 A 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 . 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.21.0400 7 MGNETSK|PR 0.071 . LmjF.21.0400 9 NETSKPR|GT 0.094 . LmjF.21.0400 19 SASNPFR|QN 0.234 . LmjF.21.0400 39 AAAATEK|AG 0.066 . LmjF.21.0400 55 ASSAHSR|PM 0.108 . LmjF.21.0400 67 AETPPLR|SA 0.183 . LmjF.21.0400 82 VGSSVPR|YV 0.219 . LmjF.21.0400 87 PRYVDAK|SM 0.093 . LmjF.21.0400 100 PCFTPDR|SL 0.111 . LmjF.21.0400 113 SGGAGAR|SQ 0.153 . LmjF.21.0400 129 ASQQLPR|MS 0.114 . LmjF.21.0400 137 SSSSDFR|VG 0.091 . LmjF.21.0400 149 SPLSPSR|RH 0.076 . LmjF.21.0400 150 PLSPSRR|HF 0.270 . LmjF.21.0400 185 CSSPVLK|SY 0.104 . LmjF.21.0400 188 PVLKSYR|QH 0.081 . LmjF.21.0400 196 HSFSHSK|RD 0.058 . LmjF.21.0400 197 SFSHSKR|DA 0.453 . LmjF.21.0400 251 STAIHTK|FL 0.093 . LmjF.21.0400 285 YHCAPLR|LR 0.069 . LmjF.21.0400 287 CAPLRLR|LL 0.068 . LmjF.21.0400 298 YHVYLTK|KG 0.062 . LmjF.21.0400 299 HVYLTKK|GK 0.096 . LmjF.21.0400 301 YLTKKGK|PG 0.069 . LmjF.21.0400 322 LIAVMHK|SN 0.079 . LmjF.21.0400 326 MHKSNNR|TK 0.088 . LmjF.21.0400 328 KSNNRTK|DK 0.098 . LmjF.21.0400 330 NNRTKDK|YP 0.074 . LmjF.21.0400 333 TKDKYPR|EK 0.091 . LmjF.21.0400 335 DKYPREK|IA 0.070 . LmjF.21.0400 339 REKIAPK|DL 0.074 . LmjF.21.0400 346 DLLNCVR|AK 0.081 . LmjF.21.0400 348 LNCVRAK|NE 0.071 . LmjF.21.0400 377 IWDTEQR|IM 0.071 . LmjF.21.0400 390 NVNLFLK|YE 0.059 . LmjF.21.0400 396 KYEASLK|KK 0.059 . LmjF.21.0400 397 YEASLKK|KG 0.091 . LmjF.21.0400 398 EASLKKK|GS 0.100 . LmjF.21.0400 406 SLSFSWK|HS 0.088 . LmjF.21.0400 409 FSWKHSK|DK 0.086 . LmjF.21.0400 411 WKHSKDK|HI 0.086 . LmjF.21.0400 419 ISSHSHK|EN 0.076 . LmjF.21.0400 422 HSHKENR|LD 0.111 . LmjF.21.0400 425 KENRLDK|TT 0.164 . LmjF.21.0400 442 VGTNGGK|AV 0.084 . LmjF.21.0400 480 CENVTAR|EE 0.080 . LmjF.21.0400 499 QGTSLLR|CL 0.084 . LmjF.21.0400 513 PEYFWGK|NK 0.061 . LmjF.21.0400 515 YFWGKNK|LR 0.059 . LmjF.21.0400 517 WGKNKLR|CE 0.097 . LmjF.21.0400 522 LRCEECK|MP 0.072 . LmjF.21.0400 526 ECKMPVR|AA 0.100 . LmjF.21.0400 529 MPVRAAK|TI 0.255 . LmjF.21.0400 546 ALLIHLK|RF 0.057 . LmjF.21.0400 547 LLIHLKR|FQ 0.313 . LmjF.21.0400 554 FQYDVEK|QI 0.070 . LmjF.21.0400 559 EKQIFTK|KA 0.080 . LmjF.21.0400 560 KQIFTKK|AD 0.133 . LmjF.21.0400 587 VIEQSLR|NK 0.067 . LmjF.21.0400 589 EQSLRNK|QA 0.086 . LmjF.21.0400 592 LRNKQAR|TQ 0.164 . LmjF.21.0400 595 KQARTQK|NS 0.151 . LmjF.21.0400 616 SSGSGQK|DE 0.071 . LmjF.21.0400 629 SSPDTFK|PA 0.081 . LmjF.21.0400 636 PASEEVR|RK 0.086 . LmjF.21.0400 637 ASEEVRR|KL 0.159 . LmjF.21.0400 638 SEEVRRK|LR 0.096 . LmjF.21.0400 640 EVRRKLR|GV 0.381 . LmjF.21.0400 644 KLRGVAR|HK 0.121 . LmjF.21.0400 646 RGVARHK|AR 0.059 . LmjF.21.0400 648 VARHKAR|FE 0.159 . LmjF.21.0400 672 HYFTCVR|YG 0.072 . LmjF.21.0400 679 YGPQLWR|RF 0.086 . LmjF.21.0400 680 GPQLWRR|FD 0.238 . LmjF.21.0400 692 VSTMAER|DV 0.172 . LmjF.21.0400 695 MAERDVK|QY 0.135 . LmjF.21.0400 719 YILLYER|VA 0.072 . ____________________________^_________________

Fasta :-
>LmjF.21.0400 ATGGGTAACGAGACGTCCAAGCCCCGCGGCACGGCGTCGGCGAGCAACCCATTTCGCCAG AACTCGCAGTCGGAGGCGGCAGTGGGCTTTGGTGGTGCTGCCGCGGCGACAGAAAAGGCG GGATCGCCAAATGCCGCGAGCACCGCTTCATCAGCCCACAGTCGTCCCATGGCGCTGTCG GCCGAGACGCCACCGTTGAGATCGGCGAGTGGGGCCACGGACACCGTCGGCTCGTCAGTG CCGCGCTACGTGGACGCAAAGAGCATGGTGTACACCCTTCCCTGCTTTACCCCCGATAGG TCGCTGAGCAGCCCGACGAGCGGCGGCGCTGGTGCACGGAGCCAACCGATCGCAATACAG ATGGCTGCCTCACAGCAGCTGCCGAGGATGTCCTCCAGCAGTGACTTCCGCGTGGGTGCG CCATCCTCGCCGCTCTCCCCATCCCGCCGGCACTTCTCCACTGCGAATCTGTCGAACACG ATGGAGATTCCGACGTACAACACGAGCACCCCCATCGCCGTGGAGGACCTTTCCTGCAGC TCACCCGTGCTCAAATCCTACCGGCAGCACTCCTTCTCTCATTCGAAGCGGGATGCGTGT CTGGCCGACTCCCCCACCTCCCCAGGCATGAGCGTCCACGGCGGTGCATTCCTCAGCACC GGCGCCTCGGAGGCTCCGGTGGCGATGAGCCTGTCCACCTCGTTCTCGTCCGGGGCGGGC GGCGGCTCGACCAGCACGGCGATCCACACAAAGTTCCTCGAGATAACCGGGCACCCGCTG GGCCTGGAGAACTACGGCAACACTTGCTACTGCAACTCCGTCATCCAGCTGATCTACCAC TGCGCCCCACTGCGGCTGCGGCTGCTCGAGTTGTACCACGTCTACCTCACCAAGAAGGGC AAGCCCGGCTTCGAGGAGGACACAGTGCTCTTCCAGCTCTGCAGCCTCATCGCCGTGATG CACAAGTCGAACAACCGCACCAAGGACAAGTACCCGCGCGAGAAGATCGCCCCAAAAGAC CTGCTGAACTGCGTGCGCGCCAAGAACGAGGACTTCAACAACGACATGCAGCAGGACGCA CACGAGTTCACCATGTTTCTGCTGAATGATATCTGGGACACGGAGCAGCGCATCATGGCC GACCCCGCCAACGTGAACCTCTTTCTCAAGTACGAGGCGTCCTTGAAGAAGAAGGGGTCG TTGTCCTTCTCCTGGAAGCACAGCAAGGATAAGCACATCAGCAGCCACAGCCACAAGGAA AACAGGCTCGACAAGACAACCTTGGCAGCGGCCACCAACAGCGACGTCGGCACGAACGGG GGCAAGGCGGTGGATGCACAGCAGCCCTTCAGCGGGGAGCTCACCCCTCTTCAGGTAATC CTGCAAGGCCAGTTCGGCTCCCTCACCGCCTGCCTCGAGTGCGAGAACGTAACCGCCCGA GAAGAGGTCTTCATGGACCTCAGCCTCGAGACGGCACAGGGCACGTCCCTCCTCCGCTGT CTCGACCACTTCGGCGACCCCGAGTACTTCTGGGGGAAGAACAAGCTGCGCTGCGAGGAG TGCAAGATGCCGGTGCGCGCCGCCAAGACGATCCACGTGCAACAGCTGCCGCAGTACGCG CTCCTTATCCACCTGAAGCGCTTCCAGTACGATGTGGAGAAGCAGATCTTCACAAAGAAG GCGGACCACGTCGCACTGCCGATGCAGATGGACGTAGAGGAATACCTGACGGACCCAGAG GTGATTGAGCAGAGCCTGCGCAACAAGCAGGCGCGCACGCAGAAGAACAGCGGCGTTGAC GCGGGCAGCAGCACCAGCGGGCACAACAGCAGCGGCAGCGGACAGAAAGACGAGGCGAAC GCAACTTCGTCGCCCGACACATTCAAGCCGGCGTCGGAGGAGGTGCGCCGCAAGCTTCGT GGTGTCGCCCGCCACAAGGCGCGCTTCGAGCTGACAGGCTTTGTCGCCCACATTGGCGAG GGACCGAACTCTGGGCACTACTTCACGTGTGTTCGCTACGGTCCTCAGCTGTGGCGCCGC TTCGACGACGAGACTGTGTCAACGATGGCGGAGCGAGATGTGAAGCAGTACTTTGGCGTT CCATCCGACGCTGTCGGCGTAGTCACGACGACGGCCTACATCCTGCTCTACGAGCGCGTT GCGTAG
Download Fasta

Fasta :-

MGNETSKPRGTASASNPFRQNSQSEAAVGFGGAAAATEKAGSPNAASTASSAHSRPMALS AETPPLRSASGATDTVGSSVPRYVDAKSMVYTLPCFTPDRSLSSPTSGGAGARSQPIAIQ MAASQQLPRMSSSSDFRVGAPSSPLSPSRRHFSTANLSNTMEIPTYNTSTPIAVEDLSCS SPVLKSYRQHSFSHSKRDACLADSPTSPGMSVHGGAFLSTGASEAPVAMSLSTSFSSGAG GGSTSTAIHTKFLEITGHPLGLENYGNTCYCNSVIQLIYHCAPLRLRLLELYHVYLTKKG KPGFEEDTVLFQLCSLIAVMHKSNNRTKDKYPREKIAPKDLLNCVRAKNEDFNNDMQQDA HEFTMFLLNDIWDTEQRIMADPANVNLFLKYEASLKKKGSLSFSWKHSKDKHISSHSHKE NRLDKTTLAAATNSDVGTNGGKAVDAQQPFSGELTPLQVILQGQFGSLTACLECENVTAR EEVFMDLSLETAQGTSLLRCLDHFGDPEYFWGKNKLRCEECKMPVRAAKTIHVQQLPQYA LLIHLKRFQYDVEKQIFTKKADHVALPMQMDVEEYLTDPEVIEQSLRNKQARTQKNSGVD AGSSTSGHNSSGSGQKDEANATSSPDTFKPASEEVRRKLRGVARHKARFELTGFVAHIGE GPNSGHYFTCVRYGPQLWRRFDDETVSTMAERDVKQYFGVPSDAVGVVTTTAYILLYERV A

SCOPe

title: Active Site
coordinates: N264,C269,H666,D683

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	LmjF.21.0400	132 S	PRMSSSSDF	0.993	unsp	LmjF.21.0400	132 S	PRMSSSSDF	0.993	unsp	LmjF.21.0400	132 S	PRMSSSSDF	0.993	unsp	LmjF.21.0400	146 S	SSPLSPSRR	0.994	unsp	LmjF.21.0400	191 S	YRQHSFSHS	0.995	unsp	LmjF.21.0400	195 S	SFSHSKRDA	0.997	unsp	LmjF.21.0400	207 S	DSPTSPGMS	0.996	unsp	LmjF.21.0400	404 S	SLSFSWKHS	0.995	unsp	LmjF.21.0400	417 S	ISSHSHKEN	0.998	unsp	LmjF.21.0400	597 S	TQKNSGVDA	0.993	unsp	LmjF.21.0400	22 S	FRQNSQSEA	0.994	unsp	LmjF.21.0400	42 S	EKAGSPNAA	0.99	unsp

LmjF.21.0400 | Peptidase C19, ubiquitin carboxyl-terminal hydrolase, putative

ID's

UniProt_ID: Q4QCH5

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0036459

Computed_GO_Functions: thiol-dependent ubiquitinyl hydrolase activity

Computed_GO_Process_IDs: GO:0016579

Computed_GO_Processes: protein deubiquitination

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs: GO:0004197

Curated_GO_Functions: cysteine-type endopeptidase activity

Curated_GO_Processes: ubiquitin-dependent protein catabolic process

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

SCOPe

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

LmjF.21.0400

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India