LmjF.22.0620 | proteasome regulatory ATPase subunit 5, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.22.0620OTHER0.9999750.0000020.000023
No Results

  • Fasta :-

    >LmjF.22.0620 MPSAKEVAEARAYAQAQEEATDKRKLQNISETELNELDTLTNDQLRTRARNLHQETQTLR SFENRSKQELVSLKRDVEMGKKRVKENNRLPYLVASIAEVLDLSDDEDEAEELAVGRKKP ERKQKSAVVKTTNRYTVFLPVAGLVDAERLSPEDLVGVNKDTFLVLDTLPPDYDSRVKAM EIDEKPKEKYTDVGGLDKQINELIEAVVMPITHKEQFEKIGIQPPKGVLLYGSPGTGKTM LARACAAATDACILRLAGPQLVQMFIGDGARIVRDAFALAKKKAPSIIFIDELDAVGSKR SDEGKHGSREVQRTMLELLSQLDGFGSSDDVKVIAATNRIDVLDPALLRSGRLDRKVEFP MPDEEARASILEIHSRRMNLDKDVNFKELARCTDDMNGAQLKAVCVEAGMLALRHDRTYV AHEDFVEGVAAVQARKKTNLNYYA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/449 Sequence name : 449 Sequence length : 444 VALUES OF COMPUTED PARAMETERS Coef20 : 3.578 CoefTot : -0.113 ChDiff : -7 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.635 1.265 0.055 0.438 MesoH : -0.459 0.545 -0.267 0.228 MuHd_075 : 13.619 5.439 4.103 3.030 MuHd_095 : 13.971 11.396 4.556 1.713 MuHd_100 : 2.608 7.155 1.781 0.339 MuHd_105 : 13.261 9.036 4.555 2.429 Hmax_075 : 3.700 3.700 -0.862 2.050 Hmax_095 : -3.100 3.400 -2.774 0.998 Hmax_100 : -3.100 1.700 -3.506 0.830 Hmax_105 : 4.550 6.183 -0.479 2.252 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9418 0.0582 DFMC : 0.9482 0.0518
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 444 LmjF.22.0620 MPSAKEVAEARAYAQAQEEATDKRKLQNISETELNELDTLTNDQLRTRARNLHQETQTLRSFENRSKQELVSLKRDVEMG 80 KKRVKENNRLPYLVASIAEVLDLSDDEDEAEELAVGRKKPERKQKSAVVKTTNRYTVFLPVAGLVDAERLSPEDLVGVNK 160 DTFLVLDTLPPDYDSRVKAMEIDEKPKEKYTDVGGLDKQINELIEAVVMPITHKEQFEKIGIQPPKGVLLYGSPGTGKTM 240 LARACAAATDACILRLAGPQLVQMFIGDGARIVRDAFALAKKKAPSIIFIDELDAVGSKRSDEGKHGSREVQRTMLELLS 320 QLDGFGSSDDVKVIAATNRIDVLDPALLRSGRLDRKVEFPMPDEEARASILEIHSRRMNLDKDVNFKELARCTDDMNGAQ 400 LKAVCVEAGMLALRHDRTYVAHEDFVEGVAAVQARKKTNLNYYA 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.22.0620 5 --MPSAK|EV 0.089 . LmjF.22.0620 11 KEVAEAR|AY 0.114 . LmjF.22.0620 23 QEEATDK|RK 0.058 . LmjF.22.0620 24 EEATDKR|KL 0.164 . LmjF.22.0620 25 EATDKRK|LQ 0.080 . LmjF.22.0620 46 LTNDQLR|TR 0.092 . LmjF.22.0620 48 NDQLRTR|AR 0.084 . LmjF.22.0620 50 QLRTRAR|NL 0.162 . LmjF.22.0620 60 QETQTLR|SF 0.100 . LmjF.22.0620 65 LRSFENR|SK 0.190 . LmjF.22.0620 67 SFENRSK|QE 0.060 . LmjF.22.0620 74 QELVSLK|RD 0.055 . LmjF.22.0620 75 ELVSLKR|DV 0.351 . LmjF.22.0620 81 RDVEMGK|KR 0.058 . LmjF.22.0620 82 DVEMGKK|RV 0.081 . LmjF.22.0620 83 VEMGKKR|VK 0.178 . LmjF.22.0620 85 MGKKRVK|EN 0.061 . LmjF.22.0620 89 RVKENNR|LP 0.068 . LmjF.22.0620 117 EELAVGR|KK 0.068 . LmjF.22.0620 118 ELAVGRK|KP 0.086 . LmjF.22.0620 119 LAVGRKK|PE 0.101 . LmjF.22.0620 122 GRKKPER|KQ 0.093 . LmjF.22.0620 123 RKKPERK|QK 0.143 . LmjF.22.0620 125 KPERKQK|SA 0.391 . LmjF.22.0620 130 QKSAVVK|TT 0.086 . LmjF.22.0620 134 VVKTTNR|YT 0.073 . LmjF.22.0620 149 GLVDAER|LS 0.079 . LmjF.22.0620 160 DLVGVNK|DT 0.083 . LmjF.22.0620 176 PPDYDSR|VK 0.074 . LmjF.22.0620 178 DYDSRVK|AM 0.061 . LmjF.22.0620 185 AMEIDEK|PK 0.067 . LmjF.22.0620 187 EIDEKPK|EK 0.065 . LmjF.22.0620 189 DEKPKEK|YT 0.093 . LmjF.22.0620 198 DVGGLDK|QI 0.062 . LmjF.22.0620 214 VMPITHK|EQ 0.060 . LmjF.22.0620 219 HKEQFEK|IG 0.068 . LmjF.22.0620 226 IGIQPPK|GV 0.083 . LmjF.22.0620 238 GSPGTGK|TM 0.054 . LmjF.22.0620 243 GKTMLAR|AC 0.108 . LmjF.22.0620 255 TDACILR|LA 0.180 . LmjF.22.0620 271 FIGDGAR|IV 0.131 . LmjF.22.0620 274 DGARIVR|DA 0.354 . LmjF.22.0620 281 DAFALAK|KK 0.061 . LmjF.22.0620 282 AFALAKK|KA 0.093 . LmjF.22.0620 283 FALAKKK|AP 0.108 . LmjF.22.0620 299 LDAVGSK|RS 0.065 . LmjF.22.0620 300 DAVGSKR|SD 0.359 . LmjF.22.0620 305 KRSDEGK|HG 0.090 . LmjF.22.0620 309 EGKHGSR|EV 0.090 . LmjF.22.0620 313 GSREVQR|TM 0.103 . LmjF.22.0620 332 GSSDDVK|VI 0.068 . LmjF.22.0620 339 VIAATNR|ID 0.071 . LmjF.22.0620 349 LDPALLR|SG 0.080 . LmjF.22.0620 352 ALLRSGR|LD 0.258 . LmjF.22.0620 355 RSGRLDR|KV 0.395 . LmjF.22.0620 356 SGRLDRK|VE 0.074 . LmjF.22.0620 367 MPDEEAR|AS 0.107 . LmjF.22.0620 376 ILEIHSR|RM 0.075 . LmjF.22.0620 377 LEIHSRR|MN 0.152 . LmjF.22.0620 382 RRMNLDK|DV 0.140 . LmjF.22.0620 387 DKDVNFK|EL 0.065 . LmjF.22.0620 391 NFKELAR|CT 0.098 . LmjF.22.0620 402 MNGAQLK|AV 0.096 . LmjF.22.0620 414 AGMLALR|HD 0.087 . LmjF.22.0620 417 LALRHDR|TY 0.227 . LmjF.22.0620 435 VAAVQAR|KK 0.112 . LmjF.22.0620 436 AAVQARK|KT 0.067 . LmjF.22.0620 437 AVQARKK|TN 0.081 . ____________________________^_________________

  • Fasta :-

    >LmjF.22.0620 ATGCCGTCCGCAAAGGAGGTAGCAGAGGCGCGCGCCTACGCGCAGGCGCAGGAAGAGGCC ACCGACAAGCGCAAGCTGCAGAACATCAGCGAGACGGAGCTGAATGAGCTTGACACCCTC ACGAACGACCAGCTGCGCACACGTGCGCGCAATCTGCACCAAGAGACGCAGACGCTCCGT AGCTTCGAGAACCGCTCGAAGCAGGAGTTGGTCTCCCTCAAGCGGGACGTGGAGATGGGC AAAAAGCGTGTAAAGGAGAACAACCGCCTGCCTTACCTCGTCGCGAGCATTGCCGAGGTG CTTGACTTGAGCGACGACGAGGACGAGGCGGAGGAGCTGGCCGTCGGCCGCAAGAAGCCG GAGCGGAAGCAGAAAAGCGCCGTCGTGAAGACGACGAATCGGTACACCGTGTTCCTGCCC GTCGCCGGCCTCGTTGACGCGGAGCGGCTGTCGCCGGAAGATCTGGTAGGCGTGAACAAG GACACATTCCTAGTGCTCGACACGCTGCCGCCGGACTACGACAGCCGTGTCAAGGCGATG GAGATCGACGAAAAGCCGAAGGAGAAGTACACAGATGTCGGTGGGCTGGATAAGCAAATC AACGAGCTGATTGAAGCTGTCGTGATGCCCATCACGCACAAGGAGCAGTTCGAGAAGATT GGCATCCAGCCCCCAAAGGGGGTGCTGCTGTACGGGTCGCCCGGTACGGGCAAGACGATG CTGGCGCGTGCCTGTGCGGCAGCGACGGACGCGTGCATCCTGCGCCTTGCGGGGCCGCAG CTGGTGCAGATGTTCATCGGCGACGGTGCCCGCATTGTGCGCGACGCCTTTGCTCTTGCG AAGAAGAAGGCGCCTTCCATCATCTTCATTGACGAGCTCGACGCCGTAGGCTCGAAGCGC TCGGACGAGGGCAAGCACGGCAGCCGCGAGGTGCAGCGCACCATGCTGGAGCTACTCTCC CAGCTGGATGGCTTTGGCAGCAGCGACGATGTGAAGGTGATCGCCGCCACCAATCGCATT GACGTGCTTGACCCGGCACTGCTGCGCAGTGGTCGCCTAGACCGCAAGGTGGAGTTCCCA ATGCCGGACGAGGAGGCGCGCGCCAGCATTTTGGAGATTCACTCGCGCCGCATGAATCTC GACAAGGACGTGAATTTCAAGGAGCTTGCCCGATGCACAGATGACATGAACGGCGCACAG CTCAAGGCTGTGTGTGTCGAGGCTGGCATGCTGGCCCTGCGCCACGATCGCACGTATGTG GCACACGAGGACTTCGTTGAGGGCGTGGCCGCGGTGCAGGCGCGCAAGAAGACGAACCTC AACTACTATGCATAA
  • Download Fasta

  • Fasta :-

    MPSAKEVAEARAYAQAQEEATDKRKLQNISETELNELDTLTNDQLRTRARNLHQETQTLR SFENRSKQELVSLKRDVEMGKKRVKENNRLPYLVASIAEVLDLSDDEDEAEELAVGRKKP ERKQKSAVVKTTNRYTVFLPVAGLVDAERLSPEDLVGVNKDTFLVLDTLPPDYDSRVKAM EIDEKPKEKYTDVGGLDKQINELIEAVVMPITHKEQFEKIGIQPPKGVLLYGSPGTGKTM LARACAAATDACILRLAGPQLVQMFIGDGARIVRDAFALAKKKAPSIIFIDELDAVGSKR SDEGKHGSREVQRTMLELLSQLDGFGSSDDVKVIAATNRIDVLDPALLRSGRLDRKVEFP MPDEEARASILEIHSRRMNLDKDVNFKELARCTDDMNGAQLKAVCVEAGMLALRHDRTYV AHEDFVEGVAAVQARKKTNLNYYA

  • title: ATP binding site
  • coordinates: S233,P234,G235,T236,G237,K238,T239,M240,D291,N338
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.22.0620190 YPKEKYTDVG0.992unspLmjF.22.0620190 YPKEKYTDVG0.992unspLmjF.22.0620190 YPKEKYTDVG0.992unspLmjF.22.062072 SQELVSLKRD0.995unspLmjF.22.0620151 SAERLSPEDL0.998unsp

LmjF.22.0620      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India