LmjF.23.0460 | trypanothione synthetase, putative

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_IDPredictionOTHERSPmTPCS_Position
LmjF.23.0460OTHER0.9998980.0000280.000074
No Results

  • Fasta :-

    >LmjF.23.0460 MGCKSSAEAKPSETRSPSARLSRNSVTTPPDRMDTAHRLHPAAREEVDLDPENVAGAEHI SPSVVTARSSSRVAAVTLHGICGYTHNGVPAYSNGTSNTWPWMKNFCEGIFMGYQWQCVE FARRWLWVTHRLLLPKRSCAYCFSSCTYAYRLKKDSSLISQRARAAMHKAAAETGAGSPS SSKEVNAATEARHLGPCTSRDTWEKVPAKFVKQGSLVPPVADSLIVYPISWGSPWGHIGV ITAVDLDRHRVYVADQNRYFHDWNG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/771 Sequence name : 771 Sequence length : 265 VALUES OF COMPUTED PARAMETERS Coef20 : 4.011 CoefTot : 0.002 ChDiff : 8 ZoneTo : 7 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.288 1.094 0.081 0.624 MesoH : -0.214 0.024 -0.325 0.179 MuHd_075 : 18.959 5.835 5.479 3.987 MuHd_095 : 15.097 3.550 3.491 3.219 MuHd_100 : 14.304 4.907 4.188 3.142 MuHd_105 : 10.534 5.798 4.488 2.191 Hmax_075 : 6.475 -0.900 1.093 1.270 Hmax_095 : -0.525 -3.413 -1.343 0.508 Hmax_100 : -0.400 -2.600 -1.695 0.460 Hmax_105 : 5.833 -1.400 -0.057 0.443 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8370 0.1630 DFMC : 0.7773 0.2227
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 265 LmjF.23.0460 MGCKSSAEAKPSETRSPSARLSRNSVTTPPDRMDTAHRLHPAAREEVDLDPENVAGAEHISPSVVTARSSSRVAAVTLHG 80 ICGYTHNGVPAYSNGTSNTWPWMKNFCEGIFMGYQWQCVEFARRWLWVTHRLLLPKRSCAYCFSSCTYAYRLKKDSSLIS 160 QRARAAMHKAAAETGAGSPSSSKEVNAATEARHLGPCTSRDTWEKVPAKFVKQGSLVPPVADSLIVYPISWGSPWGHIGV 240 ITAVDLDRHRVYVADQNRYFHDWNG 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ......................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.23.0460 4 ---MGCK|SS 0.076 . LmjF.23.0460 10 KSSAEAK|PS 0.084 . LmjF.23.0460 15 AKPSETR|SP 0.111 . LmjF.23.0460 20 TRSPSAR|LS 0.201 . LmjF.23.0460 23 PSARLSR|NS 0.229 . LmjF.23.0460 32 VTTPPDR|MD 0.082 . LmjF.23.0460 38 RMDTAHR|LH 0.081 . LmjF.23.0460 44 RLHPAAR|EE 0.099 . LmjF.23.0460 68 PSVVTAR|SS 0.193 . LmjF.23.0460 72 TARSSSR|VA 0.121 . LmjF.23.0460 104 NTWPWMK|NF 0.076 . LmjF.23.0460 123 QCVEFAR|RW 0.093 . LmjF.23.0460 124 CVEFARR|WL 0.112 . LmjF.23.0460 131 WLWVTHR|LL 0.087 . LmjF.23.0460 136 HRLLLPK|RS 0.064 . LmjF.23.0460 137 RLLLPKR|SC 0.223 . LmjF.23.0460 151 SCTYAYR|LK 0.075 . LmjF.23.0460 153 TYAYRLK|KD 0.066 . LmjF.23.0460 154 YAYRLKK|DS 0.316 . LmjF.23.0460 162 SSLISQR|AR 0.085 . LmjF.23.0460 164 LISQRAR|AA 0.186 . LmjF.23.0460 169 ARAAMHK|AA 0.084 . LmjF.23.0460 183 GSPSSSK|EV 0.077 . LmjF.23.0460 192 NAATEAR|HL 0.151 . LmjF.23.0460 200 LGPCTSR|DT 0.115 . LmjF.23.0460 205 SRDTWEK|VP 0.063 . LmjF.23.0460 209 WEKVPAK|FV 0.105 . LmjF.23.0460 212 VPAKFVK|QG 0.085 . LmjF.23.0460 248 TAVDLDR|HR 0.082 . LmjF.23.0460 250 VDLDRHR|VY 0.069 . LmjF.23.0460 258 YVADQNR|YF 0.111 . ____________________________^_________________

  • Fasta :-

    >LmjF.23.0460 ATGGGATGCAAATCATCAGCAGAAGCGAAGCCCAGCGAAACGCGTTCGCCCTCAGCTCGT CTATCCCGAAACAGCGTGACGACACCTCCCGATCGGATGGACACGGCGCACCGTCTGCAT CCAGCCGCCCGTGAAGAAGTCGATCTCGACCCTGAAAACGTCGCCGGTGCGGAGCACATT AGCCCGTCCGTCGTCACAGCCCGCAGCAGCAGCCGGGTTGCTGCCGTTACCCTGCATGGC ATCTGTGGATACACCCACAACGGTGTGCCTGCGTACAGCAATGGCACCTCGAACACATGG CCGTGGATGAAGAACTTCTGCGAAGGTATCTTCATGGGGTACCAGTGGCAGTGTGTGGAG TTCGCCAGGCGGTGGCTCTGGGTGACGCACCGACTGTTGCTGCCGAAGCGTAGCTGCGCC TACTGCTTTTCCAGCTGCACGTACGCATACCGGCTCAAGAAGGACTCATCACTCATCTCG CAGCGGGCACGTGCTGCAATGCACAAAGCTGCGGCAGAGACCGGCGCTGGCTCGCCATCG TCCTCCAAGGAAGTGAATGCCGCGACAGAGGCGAGGCACCTTGGACCGTGCACGAGCAGA GACACCTGGGAAAAGGTACCCGCCAAGTTCGTGAAGCAAGGCTCACTGGTGCCTCCGGTG GCGGACAGCCTGATTGTCTACCCGATAAGCTGGGGTAGCCCGTGGGGGCACATCGGTGTC ATCACCGCCGTTGACCTGGATCGACATCGTGTCTACGTTGCTGATCAAAACCGCTACTTT CACGACTGGAACGGCTAG
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  • Fasta :-

    MGCKSSAEAKPSETRSPSARLSRNSVTTPPDRMDTAHRLHPAAREEVDLDPENVAGAEHI SPSVVTARSSSRVAAVTLHGICGYTHNGVPAYSNGTSNTWPWMKNFCEGIFMGYQWQCVE FARRWLWVTHRLLLPKRSCAYCFSSCTYAYRLKKDSSLISQRARAAMHKAAAETGAGSPS SSKEVNAATEARHLGPCTSRDTWEKVPAKFVKQGSLVPPVADSLIVYPISWGSPWGHIGV ITAVDLDRHRVYVADQNRYFHDWNG

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.23.046071 SARSSSRVAA0.993unspLmjF.23.046071 SARSSSRVAA0.993unspLmjF.23.046071 SARSSSRVAA0.993unspLmjF.23.0460178 STGAGSPSSS0.992unspLmjF.23.046018 STRSPSARLS0.992unspLmjF.23.046025 SLSRNSVTTP0.993unsp

LmjF.23.0460      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India