LmjF.24.0620 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.24.0620OTHER0.9997800.0000150.000205
No Results

  • Fasta :-

    >LmjF.24.0620 MDVAHNRSLGFAGKEILFRKIEFERYRKPHVVEYPRSAVVLNPQHTRQLRDAMCTQRQGG EHDGSDADDDDEGAALRGYSDSDDDEDDDPRRVDKATELCSDAQFRSSLHLRWQAITPVG LGLMNLGNTCFANSVLQALAHTPAVAQYFMNTFRSADSQLGAPFDFAFALAETFRKMQHA PQQGRTGGGGAYRPGQIMSSLRLLSKHFSIGRQSDAHEFAVQLLFSCQKSLLHRLVGSKK VHPRVAHTTALHRICGGYLLSQVMWSRQEEIQQLLRAGKQQEAMDLKMEAKQAEGKRAQR ASRHGLDPQTLYSNTYDPFTILSVELAGRTLQHCLDKFCAVEELDGRSYLSPRQVGVRAK KKLSIHVPPPVLVIHVKRFTPTGNKINKHVPFPLELDITRYCTLLSSSSSSPPPPNHVQP HNGVSSPATMKRSDCQYELNAVCVHEGRSIDYGHYYTLAKAPNGMWYEFNDSHVSRLSED QLQQAQVYMLFYSRKPTVATEKMQPPRQQQHNIRGSAPASESSTAASKLGAATAVEEDGA VGRELSESEVQALMEKRRAAQRQAGSLNGHRSPPPATAAETPQLLANASGDSGDGGHAVE PASPSSSTTARAQTFKRMQEALPTDSDSDGNDEKQDCAYVRRLPARLNGCAVQDSRIEAD VAPPPSQRDDEHNAPADGEAPLKLAKVSLYGGIVKSMKCVLKDGTDGGASTDTTPPQQRK SPNFRVGRNAVQALHQRKVLNTPETVRRPASAHKFQQRIRDPMWEMEMDRGKVKKVKSKE KVPDPFEGVNPFQEVSRGMFDVRGRRRRA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/506 Sequence name : 506 Sequence length : 809 VALUES OF COMPUTED PARAMETERS Coef20 : 3.889 CoefTot : 0.000 ChDiff : 14 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.200 1.053 0.123 0.497 MesoH : 0.033 0.377 -0.279 0.257 MuHd_075 : 15.872 12.876 5.831 2.555 MuHd_095 : 24.227 10.911 5.769 4.252 MuHd_100 : 12.603 3.644 2.183 2.689 MuHd_105 : 1.986 3.456 2.630 1.690 Hmax_075 : 15.100 15.200 2.702 5.420 Hmax_095 : 10.762 9.975 0.413 4.165 Hmax_100 : 6.400 6.800 -1.037 3.360 Hmax_105 : 8.500 12.000 1.270 4.880 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8222 0.1778 DFMC : 0.8528 0.1472
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 809 LmjF.24.0620 MDVAHNRSLGFAGKEILFRKIEFERYRKPHVVEYPRSAVVLNPQHTRQLRDAMCTQRQGGEHDGSDADDDDEGAALRGYS 80 DSDDDEDDDPRRVDKATELCSDAQFRSSLHLRWQAITPVGLGLMNLGNTCFANSVLQALAHTPAVAQYFMNTFRSADSQL 160 GAPFDFAFALAETFRKMQHAPQQGRTGGGGAYRPGQIMSSLRLLSKHFSIGRQSDAHEFAVQLLFSCQKSLLHRLVGSKK 240 VHPRVAHTTALHRICGGYLLSQVMWSRQEEIQQLLRAGKQQEAMDLKMEAKQAEGKRAQRASRHGLDPQTLYSNTYDPFT 320 ILSVELAGRTLQHCLDKFCAVEELDGRSYLSPRQVGVRAKKKLSIHVPPPVLVIHVKRFTPTGNKINKHVPFPLELDITR 400 YCTLLSSSSSSPPPPNHVQPHNGVSSPATMKRSDCQYELNAVCVHEGRSIDYGHYYTLAKAPNGMWYEFNDSHVSRLSED 480 QLQQAQVYMLFYSRKPTVATEKMQPPRQQQHNIRGSAPASESSTAASKLGAATAVEEDGAVGRELSESEVQALMEKRRAA 560 QRQAGSLNGHRSPPPATAAETPQLLANASGDSGDGGHAVEPASPSSSTTARAQTFKRMQEALPTDSDSDGNDEKQDCAYV 640 RRLPARLNGCAVQDSRIEADVAPPPSQRDDEHNAPADGEAPLKLAKVSLYGGIVKSMKCVLKDGTDGGASTDTTPPQQRK 720 SPNFRVGRNAVQALHQRKVLNTPETVRRPASAHKFQQRIRDPMWEMEMDRGKVKKVKSKEKVPDPFEGVNPFQEVSRGMF 800 DVRGRRRRA 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ...............................P................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 .......P. 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LmjF.24.0620 7 MDVAHNR|SL 0.201 . LmjF.24.0620 14 SLGFAGK|EI 0.060 . LmjF.24.0620 19 GKEILFR|KI 0.097 . LmjF.24.0620 20 KEILFRK|IE 0.070 . LmjF.24.0620 25 RKIEFER|YR 0.088 . LmjF.24.0620 27 IEFERYR|KP 0.090 . LmjF.24.0620 28 EFERYRK|PH 0.117 . LmjF.24.0620 36 HVVEYPR|SA 0.129 . LmjF.24.0620 47 LNPQHTR|QL 0.124 . LmjF.24.0620 50 QHTRQLR|DA 0.421 . LmjF.24.0620 57 DAMCTQR|QG 0.095 . LmjF.24.0620 77 DEGAALR|GY 0.107 . LmjF.24.0620 91 DEDDDPR|RV 0.100 . LmjF.24.0620 92 EDDDPRR|VD 0.104 . LmjF.24.0620 95 DPRRVDK|AT 0.165 . LmjF.24.0620 106 CSDAQFR|SS 0.139 . LmjF.24.0620 112 RSSLHLR|WQ 0.114 . LmjF.24.0620 154 YFMNTFR|SA 0.249 . LmjF.24.0620 175 ALAETFR|KM 0.096 . LmjF.24.0620 176 LAETFRK|MQ 0.085 . LmjF.24.0620 185 HAPQQGR|TG 0.096 . LmjF.24.0620 193 GGGGAYR|PG 0.073 . LmjF.24.0620 202 QIMSSLR|LL 0.105 . LmjF.24.0620 206 SLRLLSK|HF 0.077 . LmjF.24.0620 212 KHFSIGR|QS 0.112 . LmjF.24.0620 229 LLFSCQK|SL 0.075 . LmjF.24.0620 234 QKSLLHR|LV 0.158 . LmjF.24.0620 239 HRLVGSK|KV 0.082 . LmjF.24.0620 240 RLVGSKK|VH 0.090 . LmjF.24.0620 244 SKKVHPR|VA 0.165 . LmjF.24.0620 253 HTTALHR|IC 0.095 . LmjF.24.0620 267 SQVMWSR|QE 0.098 . LmjF.24.0620 276 EIQQLLR|AG 0.088 . LmjF.24.0620 279 QLLRAGK|QQ 0.135 . LmjF.24.0620 287 QEAMDLK|ME 0.062 . LmjF.24.0620 291 DLKMEAK|QA 0.096 . LmjF.24.0620 296 AKQAEGK|RA 0.071 . LmjF.24.0620 297 KQAEGKR|AQ 0.242 . LmjF.24.0620 300 EGKRAQR|AS 0.287 . LmjF.24.0620 303 RAQRASR|HG 0.216 . LmjF.24.0620 329 SVELAGR|TL 0.088 . LmjF.24.0620 337 LQHCLDK|FC 0.073 . LmjF.24.0620 347 VEELDGR|SY 0.078 . LmjF.24.0620 353 RSYLSPR|QV 0.150 . LmjF.24.0620 358 PRQVGVR|AK 0.092 . LmjF.24.0620 360 QVGVRAK|KK 0.061 . LmjF.24.0620 361 VGVRAKK|KL 0.261 . LmjF.24.0620 362 GVRAKKK|LS 0.126 . LmjF.24.0620 377 VLVIHVK|RF 0.066 . LmjF.24.0620 378 LVIHVKR|FT 0.290 . LmjF.24.0620 385 FTPTGNK|IN 0.052 . LmjF.24.0620 388 TGNKINK|HV 0.083 . LmjF.24.0620 400 LELDITR|YC 0.071 . LmjF.24.0620 431 SSPATMK|RS 0.062 . LmjF.24.0620 432 SPATMKR|SD 0.565 *ProP* LmjF.24.0620 448 VCVHEGR|SI 0.157 . LmjF.24.0620 460 HYYTLAK|AP 0.060 . LmjF.24.0620 476 NDSHVSR|LS 0.204 . LmjF.24.0620 494 YMLFYSR|KP 0.069 . LmjF.24.0620 495 MLFYSRK|PT 0.114 . LmjF.24.0620 502 PTVATEK|MQ 0.061 . LmjF.24.0620 507 EKMQPPR|QQ 0.113 . LmjF.24.0620 514 QQQHNIR|GS 0.109 . LmjF.24.0620 528 SSTAASK|LG 0.056 . LmjF.24.0620 543 EDGAVGR|EL 0.134 . LmjF.24.0620 556 VQALMEK|RR 0.057 . LmjF.24.0620 557 QALMEKR|RA 0.188 . LmjF.24.0620 558 ALMEKRR|AA 0.246 . LmjF.24.0620 562 KRRAAQR|QA 0.147 . LmjF.24.0620 571 GSLNGHR|SP 0.100 . LmjF.24.0620 611 SSSTTAR|AQ 0.166 . LmjF.24.0620 616 ARAQTFK|RM 0.077 . LmjF.24.0620 617 RAQTFKR|MQ 0.255 . LmjF.24.0620 634 SDGNDEK|QD 0.066 . LmjF.24.0620 641 QDCAYVR|RL 0.095 . LmjF.24.0620 642 DCAYVRR|LP 0.101 . LmjF.24.0620 646 VRRLPAR|LN 0.150 . LmjF.24.0620 656 CAVQDSR|IE 0.073 . LmjF.24.0620 668 APPPSQR|DD 0.120 . LmjF.24.0620 683 DGEAPLK|LA 0.065 . LmjF.24.0620 686 APLKLAK|VS 0.059 . LmjF.24.0620 695 LYGGIVK|SM 0.075 . LmjF.24.0620 698 GIVKSMK|CV 0.082 . LmjF.24.0620 702 SMKCVLK|DG 0.092 . LmjF.24.0620 719 TTPPQQR|KS 0.077 . LmjF.24.0620 720 TPPQQRK|SP 0.099 . LmjF.24.0620 725 RKSPNFR|VG 0.108 . LmjF.24.0620 728 PNFRVGR|NA 0.436 . LmjF.24.0620 737 VQALHQR|KV 0.107 . LmjF.24.0620 738 QALHQRK|VL 0.083 . LmjF.24.0620 747 NTPETVR|RP 0.064 . LmjF.24.0620 748 TPETVRR|PA 0.266 . LmjF.24.0620 754 RPASAHK|FQ 0.077 . LmjF.24.0620 758 AHKFQQR|IR 0.114 . LmjF.24.0620 760 KFQQRIR|DP 0.118 . LmjF.24.0620 770 WEMEMDR|GK 0.095 . LmjF.24.0620 772 MEMDRGK|VK 0.061 . LmjF.24.0620 774 MDRGKVK|KV 0.095 . LmjF.24.0620 775 DRGKVKK|VK 0.157 . LmjF.24.0620 777 GKVKKVK|SK 0.133 . LmjF.24.0620 779 VKKVKSK|EK 0.068 . LmjF.24.0620 781 KVKSKEK|VP 0.066 . LmjF.24.0620 797 PFQEVSR|GM 0.108 . LmjF.24.0620 803 RGMFDVR|GR 0.079 . LmjF.24.0620 805 MFDVRGR|RR 0.079 . LmjF.24.0620 806 FDVRGRR|RR 0.188 . LmjF.24.0620 807 DVRGRRR|RA 0.150 . LmjF.24.0620 808 VRGRRRR|A- 0.644 *ProP* ____________________________^_________________

  • Fasta :-

    >LmjF.24.0620 ATGGACGTCGCACATAATCGCTCGCTCGGGTTCGCCGGGAAGGAGATCTTGTTCCGCAAG ATCGAGTTTGAGCGCTATCGGAAACCGCACGTTGTTGAATACCCCCGTAGCGCCGTTGTC CTCAACCCGCAGCACACACGTCAGCTCCGCGATGCGATGTGCACGCAGCGGCAGGGTGGC GAACACGACGGCAGCGACGCAGACGACGACGACGAGGGGGCGGCGCTCCGCGGATACTCG GACAGCGACGATGACGAGGACGATGACCCGCGGCGCGTCGACAAGGCAACAGAGCTGTGC TCCGACGCGCAGTTTCGCAGCAGCCTACACTTGCGTTGGCAGGCCATCACGCCTGTTGGA CTGGGGCTCATGAATCTTGGCAACACGTGCTTCGCGAACAGCGTGCTGCAAGCACTGGCC CATACCCCGGCGGTGGCGCAGTACTTCATGAACACGTTTCGCTCGGCGGACAGCCAGCTT GGCGCCCCCTTCGACTTCGCCTTCGCCCTTGCCGAGACGTTTCGCAAGATGCAGCACGCG CCACAGCAGGGCCGAACCGGCGGCGGCGGTGCGTACCGACCTGGGCAGATCATGAGCAGC CTCCGTCTGCTCTCAAAGCACTTCTCCATTGGGCGGCAGAGCGACGCGCACGAGTTCGCG GTGCAACTTCTCTTTTCGTGCCAGAAATCGCTGCTGCACCGCCTTGTCGGCTCCAAGAAG GTGCACCCCCGGGTGGCGCACACCACCGCGCTTCACCGCATCTGCGGCGGCTACCTACTC TCACAAGTGATGTGGTCGCGCCAGGAAGAGATTCAGCAGCTGCTGCGCGCCGGCAAGCAG CAGGAGGCGATGGATCTCAAGATGGAGGCAAAGCAAGCAGAGGGGAAGCGGGCGCAGCGC GCCTCACGGCACGGCCTTGACCCTCAGACCCTGTACTCCAATACCTACGACCCCTTTACG ATTCTCTCGGTGGAGTTAGCGGGGCGCACGCTGCAGCACTGCCTTGACAAGTTCTGCGCG GTCGAGGAACTCGATGGCCGCTCCTACCTGTCCCCACGCCAGGTCGGCGTGCGGGCGAAG AAAAAGCTAAGCATCCACGTCCCGCCGCCCGTGCTCGTCATCCACGTGAAGCGCTTTACC CCCACCGGCAACAAAATTAACAAGCACGTGCCGTTCCCGCTGGAGCTGGACATTACCCGC TACTGCACCCTACTGTCGTCGTCGTCATCGTCGCCGCCGCCGCCGAATCACGTGCAACCC CACAATGGTGTGTCCTCCCCAGCGACAATGAAGAGATCCGATTGCCAGTACGAGCTCAAC GCCGTATGCGTTCACGAGGGGCGTTCCATCGACTACGGCCACTACTACACCCTGGCCAAA GCCCCTAATGGCATGTGGTACGAGTTCAACGACAGCCATGTTAGTCGTCTTTCGGAGGAC CAGCTGCAGCAGGCACAGGTGTACATGCTCTTCTACTCCCGTAAGCCCACGGTCGCCACT GAGAAGATGCAGCCGCCGCGTCAGCAGCAGCACAACATCCGCGGCAGCGCACCGGCCTCT GAGTCTTCCACCGCCGCCTCCAAGCTTGGCGCGGCGACAGCAGTGGAAGAGGACGGCGCT GTTGGGCGAGAGCTGAGCGAGTCGGAGGTGCAGGCACTAATGGAGAAACGTCGCGCTGCG CAACGGCAGGCGGGCAGTTTAAACGGGCATCGCTCTCCCCCGCCCGCGACGGCCGCAGAA ACGCCGCAACTCCTGGCCAACGCGTCTGGCGACAGCGGTGACGGGGGCCACGCCGTCGAG CCCGCGTCTCCGTCGTCGAGCACGACCGCCAGGGCGCAAACCTTCAAGCGCATGCAAGAG GCGCTTCCAACGGACTCGGACAGCGACGGCAACGACGAAAAGCAGGACTGTGCATATGTA CGCCGGCTGCCGGCACGGCTGAACGGATGCGCAGTGCAGGACAGCCGCATCGAGGCAGAC GTGGCGCCACCACCCTCACAACGAGATGACGAGCACAACGCACCGGCGGACGGCGAGGCG CCGCTCAAGTTGGCCAAGGTTTCACTGTATGGTGGCATCGTTAAGTCGATGAAGTGCGTG TTGAAGGACGGCACCGACGGTGGTGCGTCCACCGACACGACGCCGCCGCAACAGCGGAAG AGCCCAAACTTTCGGGTTGGCCGGAACGCCGTGCAAGCACTGCATCAGCGCAAGGTGCTC AACACTCCTGAGACGGTACGACGACCGGCATCTGCACACAAGTTCCAGCAGCGCATCCGT GATCCCATGTGGGAGATGGAGATGGACCGCGGCAAGGTGAAGAAGGTCAAGTCGAAGGAG AAGGTGCCGGATCCGTTCGAAGGCGTCAACCCCTTCCAGGAAGTGTCACGAGGCATGTTC GACGTTCGTGGACGGCGGCGTCGGGCGTAG
  • Download Fasta

  • Fasta :-

    MDVAHNRSLGFAGKEILFRKIEFERYRKPHVVEYPRSAVVLNPQHTRQLRDAMCTQRQGG EHDGSDADDDDEGAALRGYSDSDDDEDDDPRRVDKATELCSDAQFRSSLHLRWQAITPVG LGLMNLGNTCFANSVLQALAHTPAVAQYFMNTFRSADSQLGAPFDFAFALAETFRKMQHA PQQGRTGGGGAYRPGQIMSSLRLLSKHFSIGRQSDAHEFAVQLLFSCQKSLLHRLVGSKK VHPRVAHTTALHRICGGYLLSQVMWSRQEEIQQLLRAGKQQEAMDLKMEAKQAEGKRAQR ASRHGLDPQTLYSNTYDPFTILSVELAGRTLQHCLDKFCAVEELDGRSYLSPRQVGVRAK KKLSIHVPPPVLVIHVKRFTPTGNKINKHVPFPLELDITRYCTLLSSSSSSPPPPNHVQP HNGVSSPATMKRSDCQYELNAVCVHEGRSIDYGHYYTLAKAPNGMWYEFNDSHVSRLSED QLQQAQVYMLFYSRKPTVATEKMQPPRQQQHNIRGSAPASESSTAASKLGAATAVEEDGA VGRELSESEVQALMEKRRAAQRQAGSLNGHRSPPPATAAETPQLLANASGDSGDGGHAVE PASPSSSTTARAQTFKRMQEALPTDSDSDGNDEKQDCAYVRRLPARLNGCAVQDSRIEAD VAPPPSQRDDEHNAPADGEAPLKLAKVSLYGGIVKSMKCVLKDGTDGGASTDTTPPQQRK SPNFRVGRNAVQALHQRKVLNTPETVRRPASAHKFQQRIRDPMWEMEMDRGKVKKVKSKE KVPDPFEGVNPFQEVSRGMFDVRGRRRRA

  • title: Active Site
  • coordinates: N125,C130,H454,D471
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.24.0620302 SAQRASRHGL0.992unspLmjF.24.0620302 SAQRASRHGL0.992unspLmjF.24.0620302 SAQRASRHGL0.992unspLmjF.24.0620603 SVEPASPSSS0.991unspLmjF.24.0620666 SAPPPSQRDD0.996unspLmjF.24.0620721 SQQRKSPNFR0.991unspLmjF.24.062065 SEHDGSDADD0.993unspLmjF.24.062080 SLRGYSDSDD0.997unsp

LmjF.24.0620      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India