LmjF.25.1790 | hypothetical protein, conserved

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.25.1790SP0.0498820.9500140.000104CS pos: 19-20. CLS-AL. Pr: 0.4379
No Results

  • Fasta :-

    >LmjF.25.1790 MNLVRVSLLCACTTLLCLSALYYYSMYDYEKHMNMVQRKYSVYDPLTDCATPFGQLLGVA DDVPAYSNCNTKFSSTYINYVNLMDPMDNGRRGDPSETRIVMTAYRYTAFDYCMRWLVWN RGVMPRLVENTNQLWKTVDYFNPARPEQGWSAEYITNYEEVTDVEERKFNAPRRGDAIVY RMDKNTIPAGHMAVVVKVEDDVEAAGGPEKLNELKKMRLHPRRVYVAEQNWKNQPWGGHN YSRVLQFKWRAVSEKAHEGGYVDPDELDIIGVVRVGKAMPLRAAPDPYEEALNMDNDGDL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/304 Sequence name : 304 Sequence length : 300 VALUES OF COMPUTED PARAMETERS Coef20 : 5.209 CoefTot : 0.845 ChDiff : -6 ZoneTo : 27 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.853 1.988 0.566 0.565 MesoH : -0.521 0.174 -0.298 0.158 MuHd_075 : 13.836 14.698 4.601 3.411 MuHd_095 : 17.467 10.165 3.072 4.175 MuHd_100 : 17.297 8.752 4.242 3.509 MuHd_105 : 16.008 6.779 5.200 2.132 Hmax_075 : 15.633 16.275 5.727 5.930 Hmax_095 : 15.200 21.800 5.763 5.130 Hmax_100 : 15.200 21.800 5.377 5.130 Hmax_105 : 16.200 18.317 6.412 5.798 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8977 0.1023 DFMC : 0.8900 0.1100
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 300 LmjF.25.1790 MNLVRVSLLCACTTLLCLSALYYYSMYDYEKHMNMVQRKYSVYDPLTDCATPFGQLLGVADDVPAYSNCNTKFSSTYINY 80 VNLMDPMDNGRRGDPSETRIVMTAYRYTAFDYCMRWLVWNRGVMPRLVENTNQLWKTVDYFNPARPEQGWSAEYITNYEE 160 VTDVEERKFNAPRRGDAIVYRMDKNTIPAGHMAVVVKVEDDVEAAGGPEKLNELKKMRLHPRRVYVAEQNWKNQPWGGHN 240 YSRVLQFKWRAVSEKAHEGGYVDPDELDIIGVVRVGKAMPLRAAPDPYEEALNMDNDGDL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................................................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.25.1790 5 --MNLVR|VS 0.067 . LmjF.25.1790 31 SMYDYEK|HM 0.065 . LmjF.25.1790 38 HMNMVQR|KY 0.143 . LmjF.25.1790 39 MNMVQRK|YS 0.099 . LmjF.25.1790 72 YSNCNTK|FS 0.098 . LmjF.25.1790 91 DPMDNGR|RG 0.098 . LmjF.25.1790 92 PMDNGRR|GD 0.092 . LmjF.25.1790 99 GDPSETR|IV 0.120 . LmjF.25.1790 106 IVMTAYR|YT 0.090 . LmjF.25.1790 115 AFDYCMR|WL 0.080 . LmjF.25.1790 121 RWLVWNR|GV 0.131 . LmjF.25.1790 126 NRGVMPR|LV 0.165 . LmjF.25.1790 136 NTNQLWK|TV 0.074 . LmjF.25.1790 145 DYFNPAR|PE 0.071 . LmjF.25.1790 167 VTDVEER|KF 0.074 . LmjF.25.1790 168 TDVEERK|FN 0.098 . LmjF.25.1790 173 RKFNAPR|RG 0.105 . LmjF.25.1790 174 KFNAPRR|GD 0.196 . LmjF.25.1790 181 GDAIVYR|MD 0.110 . LmjF.25.1790 184 IVYRMDK|NT 0.161 . LmjF.25.1790 197 HMAVVVK|VE 0.087 . LmjF.25.1790 210 AAGGPEK|LN 0.060 . LmjF.25.1790 215 EKLNELK|KM 0.056 . LmjF.25.1790 216 KLNELKK|MR 0.100 . LmjF.25.1790 218 NELKKMR|LH 0.070 . LmjF.25.1790 222 KMRLHPR|RV 0.175 . LmjF.25.1790 223 MRLHPRR|VY 0.183 . LmjF.25.1790 232 VAEQNWK|NQ 0.062 . LmjF.25.1790 243 GGHNYSR|VL 0.098 . LmjF.25.1790 248 SRVLQFK|WR 0.083 . LmjF.25.1790 250 VLQFKWR|AV 0.204 . LmjF.25.1790 255 WRAVSEK|AH 0.097 . LmjF.25.1790 274 DIIGVVR|VG 0.071 . LmjF.25.1790 277 GVVRVGK|AM 0.084 . LmjF.25.1790 282 GKAMPLR|AA 0.105 . ____________________________^_________________

  • Fasta :-

    >LmjF.25.1790 ATGAACCTTGTGCGCGTCTCGCTGCTCTGCGCGTGCACGACGCTTCTGTGCCTCAGTGCC CTCTACTACTACTCCATGTACGACTACGAAAAGCACATGAACATGGTGCAACGCAAGTAC TCGGTCTACGATCCGCTGACAGATTGTGCAACGCCGTTCGGACAGCTCCTCGGTGTCGCC GACGACGTTCCGGCCTACAGTAACTGCAATACCAAGTTTTCCTCAACCTACATCAACTAC GTGAACCTCATGGACCCAATGGACAACGGCCGCCGCGGCGACCCATCCGAGACACGCATT GTCATGACTGCCTACCGCTACACCGCGTTCGACTACTGCATGCGGTGGCTCGTGTGGAAC CGCGGCGTCATGCCGCGCCTCGTCGAGAACACGAATCAGCTGTGGAAGACGGTGGACTAC TTCAACCCCGCCAGGCCGGAGCAGGGCTGGTCTGCGGAGTACATCACCAACTACGAGGAG GTGACGGACGTGGAGGAGCGCAAGTTCAACGCGCCGCGGAGGGGGGACGCGATCGTCTAC CGCATGGACAAGAACACCATCCCGGCGGGTCACATGGCGGTGGTGGTAAAGGTGGAGGAC GACGTCGAAGCGGCCGGCGGCCCAGAGAAGCTGAACGAGCTGAAGAAGATGCGCCTGCAT CCTCGCCGTGTCTACGTGGCAGAGCAAAACTGGAAGAATCAGCCGTGGGGTGGGCACAAC TACAGCCGCGTGCTGCAGTTCAAATGGCGCGCCGTATCGGAGAAGGCGCACGAGGGCGGC TACGTCGACCCCGACGAGCTTGATATCATCGGCGTTGTGCGCGTGGGGAAGGCGATGCCC CTGCGTGCGGCGCCTGACCCGTACGAAGAGGCGCTCAACATGGATAACGACGGTGACCTC TAA
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  • Fasta :-

    MNLVRVSLLCACTTLLCLSALYYYSMYDYEKHMNMVQRKYSVYDPLTDCATPFGQLLGVA DDVPAYSNCNTKFSSTYINYVNLMDPMDNGRRGDPSETRIVMTAYRYTAFDYCMRWLVWN RGVMPRLVENTNQLWKTVDYFNPARPEQGWSAEYITNYEEVTDVEERKFNAPRRGDAIVY RMDKNTIPAGHMAVVVKVEDDVEAAGGPEKLNELKKMRLHPRRVYVAEQNWKNQPWGGHN YSRVLQFKWRAVSEKAHEGGYVDPDELDIIGVVRVGKAMPLRAAPDPYEEALNMDNDGDL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.25.1790261 YHEGGYVDPD0.991unspLmjF.25.1790261 YHEGGYVDPD0.991unspLmjF.25.1790261 YHEGGYVDPD0.991unspLmjF.25.179041 SQRKYSVYDP0.997unspLmjF.25.1790253 SWRAVSEKAH0.997unsp

LmjF.25.1790      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India