LmjF.25.2320 | Microsomal signal peptidase 12 kDa subunit (SPC12), putative

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  • Fasta :-

    >LmjF.25.2320 MEAAATPEANPAALALRKVHPAARWVAGLFSPMSLRDQGYCADMFQCILWGSLAVSFPVA YWMGCVFVTVIGVCAATVVCLVLFVPNWYQHPDPALKYADDMEVYDYYQQYEAAKKAARE ASTSSKKTAATSPALPRAKPHVTIA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/889 Sequence name : 889 Sequence length : 145 VALUES OF COMPUTED PARAMETERS Coef20 : 3.885 CoefTot : 0.000 ChDiff : 1 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.271 2.782 0.723 0.810 MesoH : 0.895 1.231 0.086 0.477 MuHd_075 : 26.639 11.633 5.984 4.120 MuHd_095 : 21.287 14.245 6.056 4.840 MuHd_100 : 16.332 11.928 4.185 4.293 MuHd_105 : 10.170 8.185 3.471 2.957 Hmax_075 : 7.233 8.867 -0.346 3.290 Hmax_095 : 5.250 9.800 -0.304 3.587 Hmax_100 : 4.400 9.400 -0.615 3.480 Hmax_105 : 2.200 8.750 -0.834 3.313 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9809 0.0191 DFMC : 0.9875 0.0125
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 145 LmjF.25.2320 MEAAATPEANPAALALRKVHPAARWVAGLFSPMSLRDQGYCADMFQCILWGSLAVSFPVAYWMGCVFVTVIGVCAATVVC 80 LVLFVPNWYQHPDPALKYADDMEVYDYYQQYEAAKKAAREASTSSKKTAATSPALPRAKPHVTIA 160 ................................................................................ 80 ................................................................. 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.25.2320 17 PAALALR|KV 0.132 . LmjF.25.2320 18 AALALRK|VH 0.069 . LmjF.25.2320 24 KVHPAAR|WV 0.148 . LmjF.25.2320 36 FSPMSLR|DQ 0.118 . LmjF.25.2320 97 HPDPALK|YA 0.085 . LmjF.25.2320 115 QQYEAAK|KA 0.070 . LmjF.25.2320 116 QYEAAKK|AA 0.104 . LmjF.25.2320 119 AAKKAAR|EA 0.136 . LmjF.25.2320 126 EASTSSK|KT 0.073 . LmjF.25.2320 127 ASTSSKK|TA 0.103 . LmjF.25.2320 137 TSPALPR|AK 0.095 . LmjF.25.2320 139 PALPRAK|PH 0.060 . ____________________________^_________________

  • Fasta :-

    >LmjF.25.2320 ATGGAGGCCGCCGCCACACCCGAAGCGAATCCCGCTGCGCTGGCACTGCGCAAGGTGCAC CCCGCCGCACGCTGGGTAGCTGGTCTCTTCTCACCCATGTCGCTTCGGGATCAGGGGTAC TGCGCAGACATGTTCCAGTGCATTCTGTGGGGGTCACTGGCCGTCTCCTTTCCGGTCGCG TACTGGATGGGTTGCGTGTTCGTCACTGTCATCGGTGTGTGTGCGGCGACGGTGGTGTGC CTCGTGCTCTTTGTCCCGAACTGGTATCAGCACCCAGACCCGGCTCTCAAGTACGCGGAT GACATGGAGGTGTACGACTACTACCAGCAGTACGAGGCGGCGAAGAAGGCGGCACGTGAG GCGTCAACGTCGTCCAAGAAGACGGCGGCCACTTCTCCAGCCTTGCCAAGAGCCAAGCCG CATGTTACGATCGCATGA
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.25.232034 SFSPMSLRDQ0.993unspLmjF.25.2320124 SEASTSSKKT0.996unsp

LmjF.25.2320      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India