LmjF.27.0040 | metallo- peptidase, Clan M- Family M48

_IDPredictionOTHERSPmTPCS_Position
LmjF.27.0040OTHER0.9870920.0051530.007756
No Results

  • Fasta :-

    >LmjF.27.0040 MSSSPNLFLRAAVVSLNVIGMWDAYLVLRQRRANQTKEMPSYFRKDITDEEFAKAKEYES EKSTFSFLQHLKGLVLTNMGIFLRLPALLYYLVAQRASLSTGSFSHNYAAAVAGELISVV LDIPFSYYENFHIEDRHGLNEMTKTEFVKDIVKTLLLRVTLLYPMQIKLIQFVVQRFGER FPLYLFFGMSVMLVVFLLAMPTVIQPLFNKFTPLDAESPLYKKIELLSKEMSFPLKKVFV VDGSRRSHHSNAYFYGFGSNKRIVLYDTILEQLKDDDEPIIAVLCHELGHWKHNHIYVNL AMALGQLMLISYGARLVVFDKRVYEALGFREVDPVVGLNIFAEMFYEPLSTFIGYGFCYV SRRHEFQADRFAVTHHHGEGMKKALLVISKENRASLTPDPLYSALHYTHPPVLERLQAID AELKKRE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/388 Sequence name : 388 Sequence length : 427 VALUES OF COMPUTED PARAMETERS Coef20 : 4.572 CoefTot : 0.439 ChDiff : 3 ZoneTo : 37 KR : 5 DE : 1 CleavSite : 12 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.547 2.535 0.397 0.874 MesoH : 0.179 0.982 -0.215 0.373 MuHd_075 : 19.344 15.704 4.828 5.178 MuHd_095 : 26.526 13.639 6.781 5.477 MuHd_100 : 26.731 13.940 6.943 5.825 MuHd_105 : 30.152 13.088 6.436 5.545 Hmax_075 : 18.000 22.900 4.065 8.167 Hmax_095 : 14.700 14.788 2.578 5.110 Hmax_100 : 15.300 15.700 2.771 5.360 Hmax_105 : 19.483 21.817 3.378 6.720 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7858 0.2142 DFMC : 0.6229 0.3771
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 427 LmjF.27.0040 MSSSPNLFLRAAVVSLNVIGMWDAYLVLRQRRANQTKEMPSYFRKDITDEEFAKAKEYESEKSTFSFLQHLKGLVLTNMG 80 IFLRLPALLYYLVAQRASLSTGSFSHNYAAAVAGELISVVLDIPFSYYENFHIEDRHGLNEMTKTEFVKDIVKTLLLRVT 160 LLYPMQIKLIQFVVQRFGERFPLYLFFGMSVMLVVFLLAMPTVIQPLFNKFTPLDAESPLYKKIELLSKEMSFPLKKVFV 240 VDGSRRSHHSNAYFYGFGSNKRIVLYDTILEQLKDDDEPIIAVLCHELGHWKHNHIYVNLAMALGQLMLISYGARLVVFD 320 KRVYEALGFREVDPVVGLNIFAEMFYEPLSTFIGYGFCYVSRRHEFQADRFAVTHHHGEGMKKALLVISKENRASLTPDP 400 LYSALHYTHPPVLERLQAIDAELKKRE 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.27.0040 10 SPNLFLR|AA 0.158 . LmjF.27.0040 29 DAYLVLR|QR 0.081 . LmjF.27.0040 31 YLVLRQR|RA 0.084 . LmjF.27.0040 32 LVLRQRR|AN 0.476 . LmjF.27.0040 37 RRANQTK|EM 0.070 . LmjF.27.0040 44 EMPSYFR|KD 0.074 . LmjF.27.0040 45 MPSYFRK|DI 0.312 . LmjF.27.0040 54 TDEEFAK|AK 0.070 . LmjF.27.0040 56 EEFAKAK|EY 0.078 . LmjF.27.0040 62 KEYESEK|ST 0.085 . LmjF.27.0040 72 SFLQHLK|GL 0.060 . LmjF.27.0040 84 NMGIFLR|LP 0.063 . LmjF.27.0040 96 YYLVAQR|AS 0.064 . LmjF.27.0040 136 NFHIEDR|HG 0.074 . LmjF.27.0040 144 GLNEMTK|TE 0.065 . LmjF.27.0040 149 TKTEFVK|DI 0.079 . LmjF.27.0040 153 FVKDIVK|TL 0.051 . LmjF.27.0040 158 VKTLLLR|VT 0.067 . LmjF.27.0040 168 LYPMQIK|LI 0.060 . LmjF.27.0040 176 IQFVVQR|FG 0.092 . LmjF.27.0040 180 VQRFGER|FP 0.078 . LmjF.27.0040 210 IQPLFNK|FT 0.059 . LmjF.27.0040 222 AESPLYK|KI 0.068 . LmjF.27.0040 223 ESPLYKK|IE 0.066 . LmjF.27.0040 229 KIELLSK|EM 0.059 . LmjF.27.0040 236 EMSFPLK|KV 0.093 . LmjF.27.0040 237 MSFPLKK|VF 0.073 . LmjF.27.0040 245 FVVDGSR|RS 0.067 . LmjF.27.0040 246 VVDGSRR|SH 0.166 . LmjF.27.0040 261 YGFGSNK|RI 0.056 . LmjF.27.0040 262 GFGSNKR|IV 0.150 . LmjF.27.0040 274 TILEQLK|DD 0.063 . LmjF.27.0040 292 HELGHWK|HN 0.067 . LmjF.27.0040 315 LISYGAR|LV 0.095 . LmjF.27.0040 321 RLVVFDK|RV 0.080 . LmjF.27.0040 322 LVVFDKR|VY 0.166 . LmjF.27.0040 330 YEALGFR|EV 0.131 . LmjF.27.0040 362 GFCYVSR|RH 0.081 . LmjF.27.0040 363 FCYVSRR|HE 0.159 . LmjF.27.0040 370 HEFQADR|FA 0.108 . LmjF.27.0040 382 HHGEGMK|KA 0.062 . LmjF.27.0040 383 HGEGMKK|AL 0.091 . LmjF.27.0040 390 ALLVISK|EN 0.064 . LmjF.27.0040 393 VISKENR|AS 0.085 . LmjF.27.0040 415 HPPVLER|LQ 0.068 . LmjF.27.0040 424 AIDAELK|KR 0.056 . LmjF.27.0040 425 IDAELKK|RE 0.082 . LmjF.27.0040 426 DAELKKR|E- 0.172 . ____________________________^_________________

  • Fasta :-

    >LmjF.27.0040 ATGTCATCCTCACCGAATCTCTTTCTGCGAGCGGCCGTCGTATCGCTCAATGTGATTGGC ATGTGGGATGCCTACCTGGTTCTGCGCCAGCGCCGCGCCAACCAAACCAAAGAGATGCCA TCGTATTTCAGGAAGGACATCACGGACGAGGAGTTTGCGAAGGCGAAGGAGTACGAGAGC GAGAAGAGCACGTTCAGTTTCCTCCAGCATCTGAAGGGACTCGTGCTGACCAACATGGGT ATTTTTCTGCGCCTCCCCGCACTCCTGTACTACCTTGTTGCGCAGCGCGCGAGCCTGTCT ACTGGCTCCTTCTCTCATAACTACGCCGCCGCCGTAGCCGGGGAGTTGATCTCCGTCGTA CTTGACATCCCCTTCTCCTACTACGAGAACTTCCACATTGAGGACCGGCACGGCCTCAAC GAGATGACCAAGACAGAGTTCGTAAAGGATATTGTAAAAACGCTGCTTCTCCGCGTCACG CTGCTGTACCCTATGCAGATCAAGCTCATTCAATTTGTGGTGCAACGCTTTGGTGAGCGC TTTCCGTTATACCTCTTCTTTGGAATGTCTGTGATGCTGGTCGTGTTTCTCCTGGCAATG CCGACGGTTATCCAGCCGCTGTTCAACAAGTTTACCCCGCTCGACGCGGAGTCGCCCCTG TACAAGAAGATCGAACTCCTCAGCAAAGAGATGAGCTTCCCCCTCAAGAAGGTCTTCGTC GTCGATGGCAGCCGCCGCTCGCACCACAGCAACGCCTACTTCTACGGCTTCGGCAGCAAC AAACGCATCGTTCTCTACGACACTATTCTAGAGCAGCTGAAGGACGACGACGAGCCTATC ATTGCCGTGCTCTGCCACGAGCTTGGCCATTGGAAGCACAACCACATCTACGTGAACCTT GCCATGGCCCTTGGTCAGCTCATGCTCATATCCTACGGCGCACGCCTGGTCGTCTTCGAC AAGAGGGTCTATGAAGCGCTTGGTTTCCGTGAGGTGGATCCGGTGGTCGGGCTTAACATC TTCGCTGAGATGTTCTACGAGCCCCTGAGCACGTTTATCGGATACGGCTTTTGCTATGTT TCGCGGCGGCACGAGTTTCAAGCGGACCGCTTCGCCGTGACGCACCATCACGGTGAGGGA ATGAAGAAGGCGCTCTTGGTGATCAGCAAGGAAAACCGGGCCAGCCTAACACCGGATCCG TTGTACTCGGCGCTCCACTACACGCACCCGCCCGTGCTCGAGCGGTTGCAGGCGATTGAC GCGGAGCTCAAGAAGCGGGAATAG
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  • Fasta :-

    MSSSPNLFLRAAVVSLNVIGMWDAYLVLRQRRANQTKEMPSYFRKDITDEEFAKAKEYES EKSTFSFLQHLKGLVLTNMGIFLRLPALLYYLVAQRASLSTGSFSHNYAAAVAGELISVV LDIPFSYYENFHIEDRHGLNEMTKTEFVKDIVKTLLLRVTLLYPMQIKLIQFVVQRFGER FPLYLFFGMSVMLVVFLLAMPTVIQPLFNKFTPLDAESPLYKKIELLSKEMSFPLKKVFV VDGSRRSHHSNAYFYGFGSNKRIVLYDTILEQLKDDDEPIIAVLCHELGHWKHNHIYVNL AMALGQLMLISYGARLVVFDKRVYEALGFREVDPVVGLNIFAEMFYEPLSTFIGYGFCYV SRRHEFQADRFAVTHHHGEGMKKALLVISKENRASLTPDPLYSALHYTHPPVLERLQAID AELKKRE

    No Results
  • title: Zn binding site
  • coordinates: H286,H290,E365,H409
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.27.004060 SKEYESEKST0.997unspLmjF.27.0040247 SGSRRSHHSN0.993unsp

LmjF.27.0040      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India