LmjF.27.1870 | trypanothione synthetase

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.27.1870OTHER0.9137530.0014500.084797
No Results

  • Fasta :-

    >LmjF.27.1870 MSSLQRASVSFNKPGHIPFGAVQGYAPGGVPAYSNKHDHYFSGERNIEDNIFFGFKYQCV EFARRWLLVRKGLLLPDVNWACHIFQLKEVRDAATTESFAVLQVRNGTTTKPEADALLVY PSTDANPVGHVGTITEVGDDYVCVADQNYRFHKWESSCAYKLKLDHRDGIWTIIDDIDAD EIEIPLGWLTFPGRANRPEGAPPVALHPSLHFKEPPKPYLLRRNFLPTESKANWLDMNNP AERLFVEEFGMDVSRTRLEEKVVSYYESNHEFHLRCVAYGTQLHAIFMEATAQVIESDEK LRLFAIPEEFWPRIRHSWKYQQTYISGRFDFAFNNETGEVKCFEYNADSASTLLECGLIQ QKWAESVGLDKQDTRGSGFAVERNLKMAWANSGATGRVHFCVDEEREEQYTALYCMQAAE AVGLEGKLCILFDEFRFDDNGHVVDSDGVRVRNVWKTWMWESAITDYYAAREERGENWKP SPKDKVRLCDLLLGDDWEILYFEPMWKVIPSNKAILPMIYHNHPEHPAILKAEYELTDEL RKHGYAKKPIVGRVGSNVIITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGG WMIGDAFSGTGIREDKSVITGVDSPFAAVRIKTDKLPHPVTLKDIDKMAEDE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/568 Sequence name : 568 Sequence length : 652 VALUES OF COMPUTED PARAMETERS Coef20 : 3.696 CoefTot : -2.477 ChDiff : -22 ZoneTo : 37 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.306 1.082 0.141 0.633 MesoH : -0.948 0.107 -0.469 0.147 MuHd_075 : 14.776 12.104 4.036 3.273 MuHd_095 : 25.167 14.264 6.516 5.477 MuHd_100 : 27.392 14.082 7.671 6.095 MuHd_105 : 31.438 16.794 8.993 7.159 Hmax_075 : 8.283 15.517 0.812 3.760 Hmax_095 : 12.075 10.500 1.432 4.078 Hmax_100 : 13.200 8.300 1.043 4.540 Hmax_105 : 14.200 11.600 1.589 5.200 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6192 0.3808 DFMC : 0.5553 0.4447
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 652 LmjF.27.1870 MSSLQRASVSFNKPGHIPFGAVQGYAPGGVPAYSNKHDHYFSGERNIEDNIFFGFKYQCVEFARRWLLVRKGLLLPDVNW 80 ACHIFQLKEVRDAATTESFAVLQVRNGTTTKPEADALLVYPSTDANPVGHVGTITEVGDDYVCVADQNYRFHKWESSCAY 160 KLKLDHRDGIWTIIDDIDADEIEIPLGWLTFPGRANRPEGAPPVALHPSLHFKEPPKPYLLRRNFLPTESKANWLDMNNP 240 AERLFVEEFGMDVSRTRLEEKVVSYYESNHEFHLRCVAYGTQLHAIFMEATAQVIESDEKLRLFAIPEEFWPRIRHSWKY 320 QQTYISGRFDFAFNNETGEVKCFEYNADSASTLLECGLIQQKWAESVGLDKQDTRGSGFAVERNLKMAWANSGATGRVHF 400 CVDEEREEQYTALYCMQAAEAVGLEGKLCILFDEFRFDDNGHVVDSDGVRVRNVWKTWMWESAITDYYAAREERGENWKP 480 SPKDKVRLCDLLLGDDWEILYFEPMWKVIPSNKAILPMIYHNHPEHPAILKAEYELTDELRKHGYAKKPIVGRVGSNVII 560 TSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGIREDKSVITGVDSPFAAVRIKTDKLPHPV 640 TLKDIDKMAEDE 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............ 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.27.1870 6 -MSSLQR|AS 0.077 . LmjF.27.1870 13 ASVSFNK|PG 0.062 . LmjF.27.1870 36 VPAYSNK|HD 0.070 . LmjF.27.1870 45 HYFSGER|NI 0.092 . LmjF.27.1870 56 NIFFGFK|YQ 0.062 . LmjF.27.1870 64 QCVEFAR|RW 0.084 . LmjF.27.1870 65 CVEFARR|WL 0.089 . LmjF.27.1870 70 RRWLLVR|KG 0.067 . LmjF.27.1870 71 RWLLVRK|GL 0.068 . LmjF.27.1870 88 CHIFQLK|EV 0.086 . LmjF.27.1870 91 FQLKEVR|DA 0.114 . LmjF.27.1870 105 FAVLQVR|NG 0.079 . LmjF.27.1870 111 RNGTTTK|PE 0.066 . LmjF.27.1870 150 VADQNYR|FH 0.073 . LmjF.27.1870 153 QNYRFHK|WE 0.133 . LmjF.27.1870 161 ESSCAYK|LK 0.077 . LmjF.27.1870 163 SCAYKLK|LD 0.077 . LmjF.27.1870 167 KLKLDHR|DG 0.091 . LmjF.27.1870 194 WLTFPGR|AN 0.091 . LmjF.27.1870 197 FPGRANR|PE 0.258 . LmjF.27.1870 213 HPSLHFK|EP 0.066 . LmjF.27.1870 217 HFKEPPK|PY 0.059 . LmjF.27.1870 222 PKPYLLR|RN 0.073 . LmjF.27.1870 223 KPYLLRR|NF 0.157 . LmjF.27.1870 231 FLPTESK|AN 0.057 . LmjF.27.1870 243 MNNPAER|LF 0.095 . LmjF.27.1870 255 FGMDVSR|TR 0.072 . LmjF.27.1870 257 MDVSRTR|LE 0.089 . LmjF.27.1870 261 RTRLEEK|VV 0.089 . LmjF.27.1870 275 NHEFHLR|CV 0.135 . LmjF.27.1870 300 VIESDEK|LR 0.054 . LmjF.27.1870 302 ESDEKLR|LF 0.078 . LmjF.27.1870 313 PEEFWPR|IR 0.078 . LmjF.27.1870 315 EFWPRIR|HS 0.097 . LmjF.27.1870 319 RIRHSWK|YQ 0.091 . LmjF.27.1870 328 QTYISGR|FD 0.100 . LmjF.27.1870 341 NETGEVK|CF 0.060 . LmjF.27.1870 362 CGLIQQK|WA 0.069 . LmjF.27.1870 371 ESVGLDK|QD 0.059 . LmjF.27.1870 375 LDKQDTR|GS 0.103 . LmjF.27.1870 383 SGFAVER|NL 0.087 . LmjF.27.1870 386 AVERNLK|MA 0.115 . LmjF.27.1870 397 NSGATGR|VH 0.083 . LmjF.27.1870 406 FCVDEER|EE 0.063 . LmjF.27.1870 427 AVGLEGK|LC 0.054 . LmjF.27.1870 436 ILFDEFR|FD 0.093 . LmjF.27.1870 450 VDSDGVR|VR 0.077 . LmjF.27.1870 452 SDGVRVR|NV 0.170 . LmjF.27.1870 456 RVRNVWK|TW 0.068 . LmjF.27.1870 471 TDYYAAR|EE 0.093 . LmjF.27.1870 474 YAAREER|GE 0.226 . LmjF.27.1870 479 ERGENWK|PS 0.061 . LmjF.27.1870 483 NWKPSPK|DK 0.063 . LmjF.27.1870 485 KPSPKDK|VR 0.068 . LmjF.27.1870 487 SPKDKVR|LC 0.103 . LmjF.27.1870 507 YFEPMWK|VI 0.055 . LmjF.27.1870 513 KVIPSNK|AI 0.069 . LmjF.27.1870 531 EHPAILK|AE 0.057 . LmjF.27.1870 541 ELTDELR|KH 0.082 . LmjF.27.1870 542 LTDELRK|HG 0.073 . LmjF.27.1870 547 RKHGYAK|KP 0.082 . LmjF.27.1870 548 KHGYAKK|PI 0.098 . LmjF.27.1870 553 KKPIVGR|VG 0.102 . LmjF.27.1870 574 HAESGGK|YG 0.058 . LmjF.27.1870 577 SGGKYGK|RN 0.065 . LmjF.27.1870 578 GGKYGKR|NM 0.170 . LmjF.27.1870 589 QQLFELK|KQ 0.063 . LmjF.27.1870 590 QLFELKK|QD 0.081 . LmjF.27.1870 613 FSGTGIR|ED 0.079 . LmjF.27.1870 616 TGIREDK|SV 0.466 . LmjF.27.1870 630 SPFAAVR|IK 0.127 . LmjF.27.1870 632 FAAVRIK|TD 0.057 . LmjF.27.1870 635 VRIKTDK|LP 0.068 . LmjF.27.1870 643 PHPVTLK|DI 0.075 . LmjF.27.1870 647 TLKDIDK|MA 0.089 . ____________________________^_________________

  • Fasta :-

    >LmjF.27.1870 ATGTCATCTCTGCAGCGCGCGTCTGTGAGCTTTAATAAGCCGGGCCACATTCCGTTTGGT GCTGTGCAGGGATACGCCCCGGGTGGCGTCCCGGCGTACAGCAACAAGCACGATCACTAC TTCTCCGGCGAGCGCAACATTGAGGACAACATCTTCTTCGGCTTCAAGTACCAGTGCGTC GAATTTGCGCGCCGCTGGCTACTGGTGCGTAAGGGACTGTTGCTGCCCGACGTGAACTGG GCCTGCCACATTTTCCAATTGAAGGAGGTGCGGGACGCCGCCACGACGGAGAGCTTCGCG GTATTGCAAGTGCGCAACGGTACTACGACGAAGCCAGAGGCCGACGCGCTTCTTGTCTAC CCCTCCACCGATGCAAATCCAGTTGGTCATGTCGGCACCATCACCGAGGTGGGTGACGAC TACGTATGTGTCGCGGATCAGAACTACCGCTTCCACAAGTGGGAGTCCTCCTGCGCGTAC AAGCTGAAGCTTGATCACAGGGACGGCATCTGGACCATCATCGATGACATTGACGCGGAC GAAATCGAGATCCCACTTGGGTGGTTGACGTTTCCTGGCCGCGCAAATCGACCGGAAGGG GCGCCGCCGGTGGCGCTGCATCCGTCACTGCACTTCAAGGAGCCGCCGAAGCCGTATCTG CTGCGCCGTAACTTTCTGCCGACGGAGTCCAAGGCGAACTGGCTCGACATGAACAACCCG GCGGAGCGGCTATTTGTGGAGGAGTTTGGCATGGACGTCAGCCGTACCCGCCTGGAGGAG AAGGTCGTCAGCTACTACGAGTCGAATCACGAGTTTCACCTGCGGTGCGTCGCGTACGGA ACGCAGCTGCACGCCATCTTCATGGAGGCAACCGCGCAGGTGATCGAGAGCGATGAGAAG CTCCGGCTCTTTGCCATTCCTGAGGAGTTCTGGCCCCGCATCCGCCACTCGTGGAAGTAC CAGCAGACGTACATTTCTGGTCGCTTCGACTTCGCCTTCAACAACGAGACGGGCGAGGTC AAGTGCTTCGAGTACAATGCTGACAGCGCGTCGACGCTGCTAGAGTGCGGCCTCATTCAG CAAAAGTGGGCCGAGTCGGTGGGGCTGGACAAGCAGGACACGCGCGGCTCCGGCTTCGCG GTGGAGCGCAACCTCAAGATGGCGTGGGCAAACAGCGGGGCGACTGGCCGCGTTCACTTC TGCGTTGATGAGGAAAGGGAAGAGCAGTACACGGCCCTCTACTGCATGCAGGCCGCTGAG GCAGTCGGGTTGGAGGGCAAGCTGTGCATCTTGTTCGATGAGTTCCGCTTTGATGATAAT GGTCACGTTGTCGATAGCGACGGCGTGCGTGTGCGCAATGTGTGGAAGACGTGGATGTGG GAGTCGGCCATCACGGACTATTACGCCGCCCGGGAGGAGCGAGGCGAGAACTGGAAGCCG TCCCCGAAGGACAAGGTGCGATTGTGTGACTTGCTCCTCGGCGATGACTGGGAAATTCTC TACTTCGAGCCGATGTGGAAAGTCATCCCGAGCAACAAGGCCATCCTGCCCATGATCTAC CACAACCACCCCGAACACCCAGCCATCTTGAAGGCGGAGTACGAGTTGACGGACGAGCTG CGCAAGCACGGGTACGCCAAGAAGCCGATTGTCGGCCGCGTGGGCAGCAACGTTATCATC ACCTCCGGCGACGGCGTGGTGCACGCTGAGTCTGGTGGCAAATATGGCAAGCGCAACATG ATTTACCAACAGCTGTTTGAGCTGAAGAAGCAGGATGACTACTACGCCATCATCGGCGGC TGGATGATCGGCGACGCCTTCAGCGGCACCGGCATCCGTGAGGACAAGTCAGTCATCACC GGCGTGGACAGCCCCTTCGCTGCCGTTCGCATCAAGACCGACAAACTTCCGCACCCCGTG ACGCTCAAGGATATCGACAAGATGGCCGAGGACGAGTAA
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  • Fasta :-

    MSSLQRASVSFNKPGHIPFGAVQGYAPGGVPAYSNKHDHYFSGERNIEDNIFFGFKYQCV EFARRWLLVRKGLLLPDVNWACHIFQLKEVRDAATTESFAVLQVRNGTTTKPEADALLVY PSTDANPVGHVGTITEVGDDYVCVADQNYRFHKWESSCAYKLKLDHRDGIWTIIDDIDAD EIEIPLGWLTFPGRANRPEGAPPVALHPSLHFKEPPKPYLLRRNFLPTESKANWLDMNNP AERLFVEEFGMDVSRTRLEEKVVSYYESNHEFHLRCVAYGTQLHAIFMEATAQVIESDEK LRLFAIPEEFWPRIRHSWKYQQTYISGRFDFAFNNETGEVKCFEYNADSASTLLECGLIQ QKWAESVGLDKQDTRGSGFAVERNLKMAWANSGATGRVHFCVDEEREEQYTALYCMQAAE AVGLEGKLCILFDEFRFDDNGHVVDSDGVRVRNVWKTWMWESAITDYYAAREERGENWKP SPKDKVRLCDLLLGDDWEILYFEPMWKVIPSNKAILPMIYHNHPEHPAILKAEYELTDEL RKHGYAKKPIVGRVGSNVIITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGG WMIGDAFSGTGIREDKSVITGVDSPFAAVRIKTDKLPHPVTLKDIDKMAEDE

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.27.1870317 SRIRHSWKYQ0.997unspLmjF.27.1870481 SNWKPSPKDK0.998unsp

LmjF.27.1870      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India