LmjF.28.1950 | X-pro, dipeptidyl-peptidase,serine peptidase, Clan SC, family S15, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008239      GO:0016787      

  • Computed_GO_Functions:  dipeptidyl-peptidase activity      hydrolase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.28.1950OTHER0.8332870.1557160.010997
No Results

  • Fasta :-

    >LmjF.28.1950 MYVYIYIHSQIYLSKYMCMCVYIYTHIHAYPPSPSFSFVLFVQRWRVVSAGRQTSLFPSI PGYIYIYSCCVAIIMRRVCTDLPHPTQFVEHIYITLNDNIRLAARLFMPKDASSEHRYPA ILEYIPYRKRNGTRIRDEPMHGFFAGHGYVAVRVDMRGAGESDGLLLDEYLKQEQDDALE VIDWISKQPWCTGDVGMMGKSWGGFNSLQVAARRPPALRAIIVLGFTHNRFTDDIHWKGG CLLNDNFWWGCIMQGFQSCPPDGDIVGDRWKEMWLERLDKMPLNAADWAEHQRYDAYWQH GSIQEDYSSIQVPVLLIDGWADSYTNALFHLLEGLKGPCKAICGPWAHVYPQDGTPLPRM NFLRAAKDWWDYWMKGMTANDVASWPVLQVYIEDSLPPCTIKPMAPGKWVAMDKWVNAEV PTVMYGLGAGRFLTEMGKDGATTATGTVMVHTPLNHGLISGEWMGVGTIGESAGDQRIDN GLAVTYTSAPLTAAMDILGQPIFSVTLTCDRPKGFLFAQMCDIAPDGAATRITYGIKNLV HCGPEGDRAIALVQPGQAVQVTVKMDFCGYCIPAGHSVSLSLANNYWPMVWCSPGDTTLL LDATTAVFRVPVLHPSATIVPGPDSIPEVAASTPMTVMAPGRVERSVSYEIVLDTWTCVT SVVGGVFGEGIPRLDDIDTTLEHSLRRELTLSNRDPLSARYTINQKFKVSRPHCVTDVNI TSTQHCDADYLYIQSKIKAAHNDEGVFEKSFCRRVRREAI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/541 Sequence name : 541 Sequence length : 760 VALUES OF COMPUTED PARAMETERS Coef20 : 3.935 CoefTot : -2.315 ChDiff : -12 ZoneTo : 80 KR : 6 DE : 0 CleavSite : 79 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.588 1.641 0.465 0.645 MesoH : 0.440 0.648 -0.067 0.334 MuHd_075 : 29.084 20.261 10.285 6.313 MuHd_095 : 21.167 14.460 4.932 5.772 MuHd_100 : 19.416 14.534 5.159 5.241 MuHd_105 : 22.085 16.776 6.745 6.150 Hmax_075 : 16.500 22.983 7.695 7.175 Hmax_095 : 13.475 16.800 4.075 5.810 Hmax_100 : 15.900 17.700 3.735 6.160 Hmax_105 : 14.000 18.550 4.808 5.130 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1976 0.8024 DFMC : 0.1419 0.8581 This protein is probably imported in mitochondria. f(Ser) = 0.1125 f(Arg) = 0.0625 CMi = 0.71429 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 760 LmjF.28.1950 MYVYIYIHSQIYLSKYMCMCVYIYTHIHAYPPSPSFSFVLFVQRWRVVSAGRQTSLFPSIPGYIYIYSCCVAIIMRRVCT 80 DLPHPTQFVEHIYITLNDNIRLAARLFMPKDASSEHRYPAILEYIPYRKRNGTRIRDEPMHGFFAGHGYVAVRVDMRGAG 160 ESDGLLLDEYLKQEQDDALEVIDWISKQPWCTGDVGMMGKSWGGFNSLQVAARRPPALRAIIVLGFTHNRFTDDIHWKGG 240 CLLNDNFWWGCIMQGFQSCPPDGDIVGDRWKEMWLERLDKMPLNAADWAEHQRYDAYWQHGSIQEDYSSIQVPVLLIDGW 320 ADSYTNALFHLLEGLKGPCKAICGPWAHVYPQDGTPLPRMNFLRAAKDWWDYWMKGMTANDVASWPVLQVYIEDSLPPCT 400 IKPMAPGKWVAMDKWVNAEVPTVMYGLGAGRFLTEMGKDGATTATGTVMVHTPLNHGLISGEWMGVGTIGESAGDQRIDN 480 GLAVTYTSAPLTAAMDILGQPIFSVTLTCDRPKGFLFAQMCDIAPDGAATRITYGIKNLVHCGPEGDRAIALVQPGQAVQ 560 VTVKMDFCGYCIPAGHSVSLSLANNYWPMVWCSPGDTTLLLDATTAVFRVPVLHPSATIVPGPDSIPEVAASTPMTVMAP 640 GRVERSVSYEIVLDTWTCVTSVVGGVFGEGIPRLDDIDTTLEHSLRRELTLSNRDPLSARYTINQKFKVSRPHCVTDVNI 720 TSTQHCDADYLYIQSKIKAAHNDEGVFEKSFCRRVRREAI 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ....P........................................................................... 720 ....................................P... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ LmjF.28.1950 15 SQIYLSK|YM 0.067 . LmjF.28.1950 44 FVLFVQR|WR 0.067 . LmjF.28.1950 46 LFVQRWR|VV 0.150 . LmjF.28.1950 52 RVVSAGR|QT 0.088 . LmjF.28.1950 76 CVAIIMR|RV 0.116 . LmjF.28.1950 77 VAIIMRR|VC 0.106 . LmjF.28.1950 101 TLNDNIR|LA 0.090 . LmjF.28.1950 105 NIRLAAR|LF 0.093 . LmjF.28.1950 110 ARLFMPK|DA 0.087 . LmjF.28.1950 117 DASSEHR|YP 0.115 . LmjF.28.1950 128 LEYIPYR|KR 0.076 . LmjF.28.1950 129 EYIPYRK|RN 0.082 . LmjF.28.1950 130 YIPYRKR|NG 0.120 . LmjF.28.1950 134 RKRNGTR|IR 0.114 . LmjF.28.1950 136 RNGTRIR|DE 0.110 . LmjF.28.1950 153 HGYVAVR|VD 0.085 . LmjF.28.1950 157 AVRVDMR|GA 0.157 . LmjF.28.1950 172 LLDEYLK|QE 0.053 . LmjF.28.1950 187 VIDWISK|QP 0.054 . LmjF.28.1950 200 DVGMMGK|SW 0.093 . LmjF.28.1950 213 SLQVAAR|RP 0.089 . LmjF.28.1950 214 LQVAARR|PP 0.084 . LmjF.28.1950 219 RRPPALR|AI 0.117 . LmjF.28.1950 230 LGFTHNR|FT 0.124 . LmjF.28.1950 238 TDDIHWK|GG 0.066 . LmjF.28.1950 269 GDIVGDR|WK 0.103 . LmjF.28.1950 271 IVGDRWK|EM 0.058 . LmjF.28.1950 277 KEMWLER|LD 0.080 . LmjF.28.1950 280 WLERLDK|MP 0.121 . LmjF.28.1950 293 DWAEHQR|YD 0.104 . LmjF.28.1950 336 HLLEGLK|GP 0.059 . LmjF.28.1950 340 GLKGPCK|AI 0.064 . LmjF.28.1950 359 DGTPLPR|MN 0.068 . LmjF.28.1950 364 PRMNFLR|AA 0.166 . LmjF.28.1950 367 NFLRAAK|DW 0.168 . LmjF.28.1950 375 WWDYWMK|GM 0.066 . LmjF.28.1950 402 LPPCTIK|PM 0.065 . LmjF.28.1950 408 KPMAPGK|WV 0.082 . LmjF.28.1950 414 KWVAMDK|WV 0.104 . LmjF.28.1950 431 YGLGAGR|FL 0.089 . LmjF.28.1950 438 FLTEMGK|DG 0.062 . LmjF.28.1950 477 ESAGDQR|ID 0.085 . LmjF.28.1950 511 VTLTCDR|PK 0.075 . LmjF.28.1950 513 LTCDRPK|GF 0.067 . LmjF.28.1950 531 PDGAATR|IT 0.092 . LmjF.28.1950 537 RITYGIK|NL 0.062 . LmjF.28.1950 548 CGPEGDR|AI 0.081 . LmjF.28.1950 564 AVQVTVK|MD 0.063 . LmjF.28.1950 609 ATTAVFR|VP 0.064 . LmjF.28.1950 642 TVMAPGR|VE 0.079 . LmjF.28.1950 645 APGRVER|SV 0.713 *ProP* LmjF.28.1950 673 FGEGIPR|LD 0.070 . LmjF.28.1950 686 TLEHSLR|RE 0.066 . LmjF.28.1950 687 LEHSLRR|EL 0.127 . LmjF.28.1950 694 ELTLSNR|DP 0.081 . LmjF.28.1950 700 RDPLSAR|YT 0.113 . LmjF.28.1950 706 RYTINQK|FK 0.056 . LmjF.28.1950 708 TINQKFK|VS 0.077 . LmjF.28.1950 711 QKFKVSR|PH 0.093 . LmjF.28.1950 736 YLYIQSK|IK 0.066 . LmjF.28.1950 738 YIQSKIK|AA 0.081 . LmjF.28.1950 749 DEGVFEK|SF 0.083 . LmjF.28.1950 753 FEKSFCR|RV 0.093 . LmjF.28.1950 754 EKSFCRR|VR 0.157 . LmjF.28.1950 756 SFCRRVR|RE 0.200 . LmjF.28.1950 757 FCRRVRR|EA 0.574 *ProP* ____________________________^_________________

  • Fasta :-

    >LmjF.28.1950 ATGTATGTATATATATATATACATTCACAGATATATCTGTCAAAGTATATGTGCATGTGT GTGTATATATACACACACATACATGCATATCCCCCCTCCCCCTCTTTTTCTTTCGTTTTA TTCGTACAACGCTGGCGCGTTGTTTCAGCTGGCCGCCAAACATCCCTTTTCCCATCCATC CCTGGATATATATATATATATAGCTGCTGCGTGGCCATCATAATGCGCCGCGTCTGCACG GATCTTCCGCACCCGACCCAGTTCGTGGAGCACATCTATATCACCCTCAATGATAACATC CGCCTTGCCGCACGGCTCTTTATGCCGAAGGATGCATCGTCGGAGCACCGCTATCCGGCT ATTCTGGAGTACATCCCGTACCGCAAGCGCAACGGCACCCGCATCCGTGATGAGCCTATG CACGGCTTCTTTGCCGGCCACGGCTACGTCGCAGTGCGCGTTGATATGCGCGGCGCCGGT GAGTCGGATGGCCTGCTGCTCGACGAATACCTCAAGCAGGAGCAGGACGATGCACTCGAG GTGATTGATTGGATCAGCAAGCAGCCGTGGTGCACCGGTGACGTTGGCATGATGGGCAAG TCGTGGGGTGGTTTCAATTCGCTGCAGGTGGCCGCTCGCCGTCCTCCCGCGCTGCGCGCC ATCATTGTTCTCGGCTTCACACACAACCGCTTCACCGACGACATCCACTGGAAGGGCGGG TGCCTGCTGAACGACAACTTCTGGTGGGGATGCATCATGCAGGGCTTTCAGTCATGTCCA CCCGACGGCGACATTGTCGGCGATCGTTGGAAGGAGATGTGGCTGGAGCGGCTGGACAAG ATGCCGCTGAACGCCGCTGACTGGGCTGAGCACCAGCGGTACGACGCTTATTGGCAGCAC GGGTCGATCCAGGAGGACTACAGCTCCATCCAGGTGCCGGTGCTCCTCATCGATGGCTGG GCGGACTCGTACACGAACGCCCTCTTTCACCTGCTGGAGGGGCTGAAGGGCCCGTGCAAA GCCATTTGTGGCCCGTGGGCACACGTGTACCCGCAGGACGGCACGCCGCTGCCTCGGATG AACTTCCTGCGCGCGGCCAAGGACTGGTGGGACTACTGGATGAAGGGCATGACGGCCAAC GACGTGGCGAGCTGGCCGGTGCTCCAGGTCTACATCGAAGACTCGCTGCCGCCGTGTACA ATCAAGCCGATGGCGCCCGGGAAGTGGGTGGCGATGGACAAGTGGGTGAACGCTGAGGTG CCAACCGTCATGTATGGCCTCGGGGCGGGCCGGTTCCTGACAGAGATGGGCAAGGACGGC GCCACCACTGCCACCGGCACGGTAATGGTGCACACCCCGCTGAACCATGGGCTCATCTCA GGTGAGTGGATGGGTGTGGGTACGATAGGTGAGAGTGCCGGTGACCAGCGCATCGACAAC GGCTTGGCCGTCACTTATACCTCAGCCCCGCTTACAGCTGCTATGGATATCCTCGGCCAG CCGATCTTCTCTGTGACGCTGACCTGCGATCGACCGAAGGGCTTCCTGTTCGCCCAGATG TGCGACATTGCGCCAGACGGGGCGGCCACGCGCATCACGTACGGCATTAAGAACCTGGTT CACTGTGGCCCCGAGGGCGACAGGGCCATTGCCTTGGTGCAGCCCGGGCAGGCGGTGCAG GTGACGGTGAAGATGGACTTCTGCGGCTACTGCATCCCGGCCGGCCACAGCGTCTCCCTT TCACTCGCGAACAACTACTGGCCCATGGTTTGGTGCTCTCCGGGGGACACAACGCTGCTG CTGGACGCCACAACGGCTGTTTTCCGTGTCCCGGTGCTCCACCCGAGCGCCACCATTGTC CCTGGCCCGGATTCGATTCCGGAGGTGGCAGCCTCGACTCCCATGACGGTGATGGCGCCC GGTCGCGTGGAGCGCTCCGTTTCATACGAGATCGTGCTGGACACCTGGACATGCGTCACG AGCGTTGTCGGCGGCGTGTTTGGCGAGGGCATTCCCCGCTTAGACGACATTGACACAACG CTGGAACACAGTCTGCGTCGTGAGCTGACACTCAGCAACCGCGACCCGCTCTCGGCGCGC TACACCATTAACCAGAAGTTCAAGGTCAGCCGCCCGCACTGCGTCACGGACGTAAATATT ACGAGTACACAGCACTGTGATGCTGACTATCTCTACATTCAGTCCAAGATAAAGGCTGCA CACAACGACGAGGGTGTCTTTGAGAAGAGCTTCTGCCGTCGCGTGCGTCGGGAGGCCATC TAA
  • Download Fasta

  • Fasta :-

    MYVYIYIHSQIYLSKYMCMCVYIYTHIHAYPPSPSFSFVLFVQRWRVVSAGRQTSLFPSI PGYIYIYSCCVAIIMRRVCTDLPHPTQFVEHIYITLNDNIRLAARLFMPKDASSEHRYPA ILEYIPYRKRNGTRIRDEPMHGFFAGHGYVAVRVDMRGAGESDGLLLDEYLKQEQDDALE VIDWISKQPWCTGDVGMMGKSWGGFNSLQVAARRPPALRAIIVLGFTHNRFTDDIHWKGG CLLNDNFWWGCIMQGFQSCPPDGDIVGDRWKEMWLERLDKMPLNAADWAEHQRYDAYWQH GSIQEDYSSIQVPVLLIDGWADSYTNALFHLLEGLKGPCKAICGPWAHVYPQDGTPLPRM NFLRAAKDWWDYWMKGMTANDVASWPVLQVYIEDSLPPCTIKPMAPGKWVAMDKWVNAEV PTVMYGLGAGRFLTEMGKDGATTATGTVMVHTPLNHGLISGEWMGVGTIGESAGDQRIDN GLAVTYTSAPLTAAMDILGQPIFSVTLTCDRPKGFLFAQMCDIAPDGAATRITYGIKNLV HCGPEGDRAIALVQPGQAVQVTVKMDFCGYCIPAGHSVSLSLANNYWPMVWCSPGDTTLL LDATTAVFRVPVLHPSATIVPGPDSIPEVAASTPMTVMAPGRVERSVSYEIVLDTWTCVT SVVGGVFGEGIPRLDDIDTTLEHSLRRELTLSNRDPLSARYTINQKFKVSRPHCVTDVNI TSTQHCDADYLYIQSKIKAAHNDEGVFEKSFCRRVRREAI

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.28.1950692 SELTLSNRDP0.994unspLmjF.28.1950692 SELTLSNRDP0.994unspLmjF.28.1950692 SELTLSNRDP0.994unspLmjF.28.1950472 STIGESAGDQ0.994unspLmjF.28.1950684 STLEHSLRRE0.992unsp

LmjF.28.1950      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India