LmjF.29.0820 | CPC cysteine peptidase, Clan CA, family C1, Cathepsin B-like

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008234      

  • Computed_GO_Functions:  cysteine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.29.0820SP0.0013790.9985820.000039CS pos: 25-26. VSG-LY. Pr: 0.6020
No Results

  • Fasta :-

    >LmjF.29.0820 MALRAKSALCLVAVFALLLATTVSGLYAKPSDFPLLGKSFVAEVNSKAKGQWTASADNGY LVTGKSLGEVRKLMGVTDMSTEAVPPRNFSVEELQQDLPEFFDAAEHWPMCLTISEIRDQ SNCGSCWAIAAVEAISDRYCTFGGVPDRRMSTSNLLSCCFICGLGCHGGIPTVAWLWWVW VGIATEDCQPYPFDPCSHHGNSEKYPPCPSTIYDTPKCNTTCERSEMDLVKYKGSTSYSV KGEKELMIELMTNGPLELTMQVYSDFVGYKSGVYKHVLGEFLGGHAVKLVGWGTQDGVPY WKVANSWNTDWGDKGYFLIQRGNNECKIESGGVAGIPAQE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/924 Sequence name : 924 Sequence length : 340 VALUES OF COMPUTED PARAMETERS Coef20 : 5.230 CoefTot : 1.426 ChDiff : -9 ZoneTo : 31 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.171 2.465 0.550 0.776 MesoH : 0.177 0.567 -0.050 0.302 MuHd_075 : 12.480 13.956 4.351 3.926 MuHd_095 : 12.934 11.252 3.277 3.915 MuHd_100 : 13.161 9.568 2.626 3.676 MuHd_105 : 13.494 9.177 2.706 3.483 Hmax_075 : 19.250 26.017 5.970 7.140 Hmax_095 : 16.888 22.488 3.655 6.527 Hmax_100 : 17.700 22.400 3.299 6.840 Hmax_105 : 16.713 20.738 4.194 6.840 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9320 0.0680 DFMC : 0.9074 0.0926
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 340 LmjF.29.0820 MALRAKSALCLVAVFALLLATTVSGLYAKPSDFPLLGKSFVAEVNSKAKGQWTASADNGYLVTGKSLGEVRKLMGVTDMS 80 TEAVPPRNFSVEELQQDLPEFFDAAEHWPMCLTISEIRDQSNCGSCWAIAAVEAISDRYCTFGGVPDRRMSTSNLLSCCF 160 ICGLGCHGGIPTVAWLWWVWVGIATEDCQPYPFDPCSHHGNSEKYPPCPSTIYDTPKCNTTCERSEMDLVKYKGSTSYSV 240 KGEKELMIELMTNGPLELTMQVYSDFVGYKSGVYKHVLGEFLGGHAVKLVGWGTQDGVPYWKVANSWNTDWGDKGYFLIQ 320 RGNNECKIESGGVAGIPAQE 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.29.0820 4 ---MALR|AK 0.080 . LmjF.29.0820 6 -MALRAK|SA 0.085 . LmjF.29.0820 29 VSGLYAK|PS 0.064 . LmjF.29.0820 38 DFPLLGK|SF 0.070 . LmjF.29.0820 47 VAEVNSK|AK 0.070 . LmjF.29.0820 49 EVNSKAK|GQ 0.074 . LmjF.29.0820 65 GYLVTGK|SL 0.103 . LmjF.29.0820 71 KSLGEVR|KL 0.103 . LmjF.29.0820 72 SLGEVRK|LM 0.095 . LmjF.29.0820 87 TEAVPPR|NF 0.156 . LmjF.29.0820 118 LTISEIR|DQ 0.101 . LmjF.29.0820 138 VEAISDR|YC 0.100 . LmjF.29.0820 148 FGGVPDR|RM 0.085 . LmjF.29.0820 149 GGVPDRR|MS 0.134 . LmjF.29.0820 204 HHGNSEK|YP 0.059 . LmjF.29.0820 217 TIYDTPK|CN 0.087 . LmjF.29.0820 224 CNTTCER|SE 0.108 . LmjF.29.0820 231 SEMDLVK|YK 0.072 . LmjF.29.0820 233 MDLVKYK|GS 0.065 . LmjF.29.0820 241 STSYSVK|GE 0.069 . LmjF.29.0820 244 YSVKGEK|EL 0.068 . LmjF.29.0820 270 SDFVGYK|SG 0.069 . LmjF.29.0820 275 YKSGVYK|HV 0.116 . LmjF.29.0820 288 LGGHAVK|LV 0.108 . LmjF.29.0820 302 DGVPYWK|VA 0.060 . LmjF.29.0820 314 NTDWGDK|GY 0.061 . LmjF.29.0820 321 GYFLIQR|GN 0.080 . LmjF.29.0820 327 RGNNECK|IE 0.082 . ____________________________^_________________

  • Fasta :-

    >LmjF.29.0820 ATGGCCCTCCGCGCCAAGTCTGCGCTGTGCCTGGTGGCCGTGTTCGCCCTGCTGCTGGCC ACCACGGTGAGCGGCCTCTACGCCAAGCCGAGTGACTTTCCGCTTCTCGGCAAGAGTTTT GTGGCGGAGGTCAACTCAAAGGCGAAGGGTCAGTGGACCGCCTCGGCCGATAATGGCTAC CTGGTCACGGGCAAGAGCCTCGGGGAGGTGCGCAAGCTGATGGGTGTGACCGACATGAGC ACCGAGGCTGTCCCTCCCCGCAACTTCTCTGTGGAGGAACTGCAGCAAGACCTGCCAGAG TTCTTCGACGCCGCCGAGCATTGGCCCATGTGCTTGACGATCAGCGAGATTCGTGACCAA TCGAACTGCGGCTCGTGCTGGGCCATCGCGGCGGTGGAGGCTATTTCGGACCGCTACTGC ACCTTCGGTGGCGTTCCGGATCGCCGCATGTCGACCAGCAACCTTCTCTCCTGCTGCTTC ATATGCGGCCTTGGCTGCCACGGCGGCATTCCGACGGTAGCGTGGCTATGGTGGGTGTGG GTAGGCATAGCGACTGAGGACTGCCAGCCCTACCCCTTTGACCCATGCAGCCATCACGGG AACAGCGAGAAGTACCCGCCCTGCCCGAGCACCATCTACGATACCCCTAAATGCAATACC ACCTGTGAGAGAAGCGAGATGGATCTGGTCAAGTACAAGGGCAGCACATCTTACTCCGTC AAGGGCGAGAAGGAGCTCATGATTGAGCTCATGACCAACGGCCCCTTGGAGTTGACCATG CAGGTGTACTCTGACTTCGTCGGCTACAAGAGTGGAGTGTACAAGCACGTCCTTGGTGAA TTTCTCGGCGGACACGCTGTAAAACTGGTCGGTTGGGGAACCCAAGACGGTGTCCCGTAC TGGAAGGTTGCCAACAGCTGGAACACCGACTGGGGTGACAAAGGCTACTTCTTGATCCAG CGCGGCAACAATGAGTGCAAAATTGAGAGTGGCGGCGTTGCTGGCATACCCGCGCAGGAG TAG
  • Download Fasta

  • Fasta :-

    MALRAKSALCLVAVFALLLATTVSGLYAKPSDFPLLGKSFVAEVNSKAKGQWTASADNGY LVTGKSLGEVRKLMGVTDMSTEAVPPRNFSVEELQQDLPEFFDAAEHWPMCLTISEIRDQ SNCGSCWAIAAVEAISDRYCTFGGVPDRRMSTSNLLSCCFICGLGCHGGIPTVAWLWWVW VGIATEDCQPYPFDPCSHHGNSEKYPPCPSTIYDTPKCNTTCERSEMDLVKYKGSTSYSV KGEKELMIELMTNGPLELTMQVYSDFVGYKSGVYKHVLGEFLGGHAVKLVGWGTQDGVPY WKVANSWNTDWGDKGYFLIQRGNNECKIESGGVAGIPAQE

  • title: active site
  • coordinates: Q120,C126,H285,N305
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.29.0820225 STCERSEMDL0.993unspLmjF.29.0820225 STCERSEMDL0.993unspLmjF.29.0820225 STCERSEMDL0.993unspLmjF.29.0820239 SSTSYSVKGE0.993unspLmjF.29.082090 SPRNFSVEEL0.996unspLmjF.29.0820151 SDRRMSTSNL0.997unsp

LmjF.29.0820      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India