LmjF.29.2300 | ubiquitin carboxyl-terminal hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.29.2300OTHER0.9984390.0015560.000005
No Results

  • Fasta :-

    >LmjF.29.2300 MPFPVTQEACPHAWSDSAIVTPFPGKTVHRDECAYCCRTCRQGDGVYVCMACHTGLCCEH LEKHMRVHGEHAMYTTVKKLAAKETDEVKDVNYLGVVAPAEYETAVCCADCQVQFAQVPD LAVEAYSGIINAPEPGAQDSAADGGVGRLQKPQCPHLVCLEQLASPFAVCPPTSDDICSV EMCGCNVNNWMCVTCGAIGCPRPEAGGQGHALQHYKLTGHPACVKLGTITAQGADYYCYA CDDDVDDVHFAAHMAHFGIDVQTAKKTAKTMGELEYDYSSQFDFNKITEAGVSLVPSYGP GHTGIENIGNSCYLASVVQCLMSLGPFQRSFFPAKSTPHQAQCTADPYNCHHCQTERVAA GLLSGEFSREGHELTNGICPRLFKKVYAHQHPEFSTGAQQDAQEYLLYLLEEMHRHVRLN SSGSTSAGHVPQQIHPSGVMEMVIEQRMQCSKCQRVRYTYETDKCLSLPIPIDPVPASSA AAAASEAEMDATRPRCSLEDCLQAATSPSGIECRCEACLESAVYYTVTRLASFPDVLPVY IRRTYFDMTAHNTKKMDAYVEVPQKLDLEAYRGTGLQPGEVLMPASSVSPARQPTVDALA GAPQQEVDEVALVSVVSMGIEMDVARYALLQTNMNVERAIDYIFSHPHIADEIKSVPPLH AEEQQQRLAPTHNATSVRAPQPATDGAASYELTAMISHMGASARTGHYVCHIKDGATGKW LLFNDEKVGESQNPPFSLASLYFFQRKA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/45 Sequence name : 45 Sequence length : 748 VALUES OF COMPUTED PARAMETERS Coef20 : 3.603 CoefTot : -0.661 ChDiff : -31 ZoneTo : 7 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.418 1.424 0.289 0.486 MesoH : -0.169 0.299 -0.162 0.208 MuHd_075 : 20.790 16.838 7.983 4.281 MuHd_095 : 23.438 13.128 7.444 3.273 MuHd_100 : 16.590 8.412 5.834 1.857 MuHd_105 : 9.872 4.841 4.076 0.637 Hmax_075 : 14.117 10.150 2.345 4.538 Hmax_095 : 11.200 7.962 2.226 3.001 Hmax_100 : 10.800 5.800 2.114 2.810 Hmax_105 : 6.900 3.900 0.565 2.205 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9875 0.0125 DFMC : 0.9740 0.0260
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 748 LmjF.29.2300 MPFPVTQEACPHAWSDSAIVTPFPGKTVHRDECAYCCRTCRQGDGVYVCMACHTGLCCEHLEKHMRVHGEHAMYTTVKKL 80 AAKETDEVKDVNYLGVVAPAEYETAVCCADCQVQFAQVPDLAVEAYSGIINAPEPGAQDSAADGGVGRLQKPQCPHLVCL 160 EQLASPFAVCPPTSDDICSVEMCGCNVNNWMCVTCGAIGCPRPEAGGQGHALQHYKLTGHPACVKLGTITAQGADYYCYA 240 CDDDVDDVHFAAHMAHFGIDVQTAKKTAKTMGELEYDYSSQFDFNKITEAGVSLVPSYGPGHTGIENIGNSCYLASVVQC 320 LMSLGPFQRSFFPAKSTPHQAQCTADPYNCHHCQTERVAAGLLSGEFSREGHELTNGICPRLFKKVYAHQHPEFSTGAQQ 400 DAQEYLLYLLEEMHRHVRLNSSGSTSAGHVPQQIHPSGVMEMVIEQRMQCSKCQRVRYTYETDKCLSLPIPIDPVPASSA 480 AAAASEAEMDATRPRCSLEDCLQAATSPSGIECRCEACLESAVYYTVTRLASFPDVLPVYIRRTYFDMTAHNTKKMDAYV 560 EVPQKLDLEAYRGTGLQPGEVLMPASSVSPARQPTVDALAGAPQQEVDEVALVSVVSMGIEMDVARYALLQTNMNVERAI 640 DYIFSHPHIADEIKSVPPLHAEEQQQRLAPTHNATSVRAPQPATDGAASYELTAMISHMGASARTGHYVCHIKDGATGKW 720 LLFNDEKVGESQNPPFSLASLYFFQRKA 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ............................ 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.29.2300 26 VTPFPGK|TV 0.074 . LmjF.29.2300 30 PGKTVHR|DE 0.107 . LmjF.29.2300 38 ECAYCCR|TC 0.096 . LmjF.29.2300 41 YCCRTCR|QG 0.272 . LmjF.29.2300 63 CCEHLEK|HM 0.063 . LmjF.29.2300 66 HLEKHMR|VH 0.107 . LmjF.29.2300 78 AMYTTVK|KL 0.077 . LmjF.29.2300 79 MYTTVKK|LA 0.114 . LmjF.29.2300 83 VKKLAAK|ET 0.074 . LmjF.29.2300 89 KETDEVK|DV 0.078 . LmjF.29.2300 148 ADGGVGR|LQ 0.090 . LmjF.29.2300 151 GVGRLQK|PQ 0.136 . LmjF.29.2300 202 GAIGCPR|PE 0.096 . LmjF.29.2300 216 HALQHYK|LT 0.073 . LmjF.29.2300 225 GHPACVK|LG 0.054 . LmjF.29.2300 265 IDVQTAK|KT 0.067 . LmjF.29.2300 266 DVQTAKK|TA 0.096 . LmjF.29.2300 269 TAKKTAK|TM 0.088 . LmjF.29.2300 286 SQFDFNK|IT 0.083 . LmjF.29.2300 329 SLGPFQR|SF 0.189 . LmjF.29.2300 335 RSFFPAK|ST 0.107 . LmjF.29.2300 357 HHCQTER|VA 0.097 . LmjF.29.2300 369 LSGEFSR|EG 0.091 . LmjF.29.2300 381 TNGICPR|LF 0.118 . LmjF.29.2300 384 ICPRLFK|KV 0.190 . LmjF.29.2300 385 CPRLFKK|VY 0.115 . LmjF.29.2300 415 LLEEMHR|HV 0.088 . LmjF.29.2300 418 EMHRHVR|LN 0.258 . LmjF.29.2300 447 EMVIEQR|MQ 0.076 . LmjF.29.2300 452 QRMQCSK|CQ 0.066 . LmjF.29.2300 455 QCSKCQR|VR 0.105 . LmjF.29.2300 457 SKCQRVR|YT 0.111 . LmjF.29.2300 464 YTYETDK|CL 0.059 . LmjF.29.2300 493 AEMDATR|PR 0.081 . LmjF.29.2300 495 MDATRPR|CS 0.084 . LmjF.29.2300 514 PSGIECR|CE 0.090 . LmjF.29.2300 529 VYYTVTR|LA 0.076 . LmjF.29.2300 542 VLPVYIR|RT 0.075 . LmjF.29.2300 543 LPVYIRR|TY 0.142 . LmjF.29.2300 554 MTAHNTK|KM 0.070 . LmjF.29.2300 555 TAHNTKK|MD 0.135 . LmjF.29.2300 565 YVEVPQK|LD 0.060 . LmjF.29.2300 572 LDLEAYR|GT 0.112 . LmjF.29.2300 592 SSVSPAR|QP 0.089 . LmjF.29.2300 626 IEMDVAR|YA 0.134 . LmjF.29.2300 638 TNMNVER|AI 0.153 . LmjF.29.2300 654 HIADEIK|SV 0.112 . LmjF.29.2300 667 AEEQQQR|LA 0.096 . LmjF.29.2300 678 HNATSVR|AP 0.118 . LmjF.29.2300 704 HMGASAR|TG 0.115 . LmjF.29.2300 713 HYVCHIK|DG 0.069 . LmjF.29.2300 719 KDGATGK|WL 0.065 . LmjF.29.2300 727 LLFNDEK|VG 0.060 . LmjF.29.2300 746 SLYFFQR|KA 0.112 . LmjF.29.2300 747 LYFFQRK|A- 0.089 . ____________________________^_________________

  • Fasta :-

    >LmjF.29.2300 ATGCCGTTCCCTGTGACGCAGGAGGCGTGTCCTCACGCGTGGAGTGACTCTGCCATAGTG ACCCCGTTCCCCGGAAAGACAGTGCACCGCGACGAGTGCGCGTACTGCTGCCGCACGTGC CGTCAAGGCGACGGAGTCTATGTATGTATGGCATGCCACACGGGTCTGTGTTGCGAGCAC CTGGAGAAGCACATGAGGGTGCACGGGGAGCACGCCATGTACACAACCGTCAAGAAGCTC GCCGCAAAGGAAACGGATGAGGTGAAGGACGTGAATTACCTTGGTGTAGTGGCCCCCGCG GAGTACGAGACGGCGGTGTGCTGCGCGGATTGCCAGGTGCAGTTTGCGCAAGTACCGGAC CTAGCTGTGGAGGCGTACAGCGGCATCATCAACGCGCCGGAGCCAGGCGCGCAGGATAGC GCAGCTGATGGCGGTGTGGGCCGCCTGCAGAAGCCGCAATGCCCTCACCTGGTGTGCCTC GAACAGCTGGCGAGCCCCTTTGCTGTTTGCCCGCCCACTTCCGACGACATCTGCTCTGTG GAGATGTGCGGATGCAACGTGAACAACTGGATGTGCGTCACGTGCGGTGCAATCGGTTGC CCTCGTCCCGAGGCAGGGGGCCAGGGCCATGCACTGCAGCACTATAAGCTGACAGGACAC CCGGCATGTGTCAAGCTTGGTACCATCACCGCGCAGGGCGCCGACTACTATTGCTACGCC TGCGACGATGACGTTGATGACGTACACTTCGCAGCCCACATGGCACACTTTGGCATTGAC GTACAAACTGCCAAGAAGACCGCCAAGACGATGGGCGAGCTCGAGTACGACTACTCCTCG CAGTTTGACTTCAACAAGATCACGGAGGCCGGCGTGTCCTTGGTGCCATCCTACGGCCCA GGCCACACTGGCATCGAGAATATTGGCAACAGCTGCTACCTCGCATCCGTTGTGCAGTGC CTTATGTCGCTGGGCCCGTTCCAGCGCTCCTTCTTTCCGGCTAAGTCGACCCCGCATCAG GCGCAGTGCACCGCGGATCCGTACAACTGCCACCACTGCCAGACGGAGCGTGTGGCGGCC GGCTTGCTCTCCGGTGAGTTCAGCCGGGAAGGCCACGAGCTCACCAACGGCATCTGCCCC CGCCTCTTTAAGAAGGTGTACGCCCACCAGCACCCTGAGTTCTCTACCGGCGCTCAGCAG GATGCTCAGGAGTACCTGCTCTACCTGCTGGAAGAGATGCATCGGCACGTGCGCCTCAAC AGCAGCGGCAGCACCAGTGCCGGCCATGTGCCGCAGCAGATTCACCCGTCTGGTGTCATG GAGATGGTGATTGAACAGCGTATGCAGTGCAGCAAGTGCCAGCGAGTGCGCTACACGTAC GAGACGGACAAATGCCTATCCTTGCCGATCCCGATCGATCCAGTGCCGGCCTCGTCTGCT GCGGCTGCTGCAAGCGAGGCAGAGATGGACGCGACACGGCCTCGGTGCTCGCTGGAGGAC TGCCTGCAAGCAGCCACCTCGCCGAGCGGCATCGAGTGCCGGTGCGAAGCATGCCTTGAA TCGGCCGTGTACTACACCGTCACCCGTCTCGCCAGCTTCCCAGATGTTCTGCCAGTGTAC ATTCGCCGCACGTACTTCGACATGACTGCCCACAACACAAAGAAAATGGATGCATATGTG GAGGTGCCGCAGAAGCTCGATTTGGAGGCTTACCGCGGCACTGGGCTGCAGCCAGGTGAG GTGCTGATGCCTGCTTCGTCGGTCTCCCCTGCACGACAGCCTACGGTAGATGCCCTCGCG GGCGCTCCGCAGCAGGAAGTAGATGAGGTGGCACTGGTGTCGGTGGTTAGCATGGGGATC GAGATGGACGTCGCGCGCTACGCCCTCTTACAGACGAACATGAACGTTGAGCGCGCTATC GACTACATATTCAGCCATCCGCACATCGCGGACGAGATCAAGTCCGTGCCACCGCTGCAC GCCGAGGAGCAGCAGCAGCGTTTGGCGCCGACCCACAACGCTACTTCAGTGCGCGCTCCA CAGCCGGCTACCGATGGGGCCGCCTCGTACGAGCTCACAGCGATGATCAGTCACATGGGT GCGAGTGCGCGGACGGGGCATTACGTTTGCCACATCAAGGATGGCGCGACGGGCAAGTGG CTCCTATTTAATGATGAAAAGGTGGGTGAGTCGCAGAACCCGCCCTTCTCCCTGGCGTCG CTGTACTTTTTCCAACGCAAGGCGTAA
  • Download Fasta

  • Fasta :-

    MPFPVTQEACPHAWSDSAIVTPFPGKTVHRDECAYCCRTCRQGDGVYVCMACHTGLCCEH LEKHMRVHGEHAMYTTVKKLAAKETDEVKDVNYLGVVAPAEYETAVCCADCQVQFAQVPD LAVEAYSGIINAPEPGAQDSAADGGVGRLQKPQCPHLVCLEQLASPFAVCPPTSDDICSV EMCGCNVNNWMCVTCGAIGCPRPEAGGQGHALQHYKLTGHPACVKLGTITAQGADYYCYA CDDDVDDVHFAAHMAHFGIDVQTAKKTAKTMGELEYDYSSQFDFNKITEAGVSLVPSYGP GHTGIENIGNSCYLASVVQCLMSLGPFQRSFFPAKSTPHQAQCTADPYNCHHCQTERVAA GLLSGEFSREGHELTNGICPRLFKKVYAHQHPEFSTGAQQDAQEYLLYLLEEMHRHVRLN SSGSTSAGHVPQQIHPSGVMEMVIEQRMQCSKCQRVRYTYETDKCLSLPIPIDPVPASSA AAAASEAEMDATRPRCSLEDCLQAATSPSGIECRCEACLESAVYYTVTRLASFPDVLPVY IRRTYFDMTAHNTKKMDAYVEVPQKLDLEAYRGTGLQPGEVLMPASSVSPARQPTVDALA GAPQQEVDEVALVSVVSMGIEMDVARYALLQTNMNVERAIDYIFSHPHIADEIKSVPPLH AEEQQQRLAPTHNATSVRAPQPATDGAASYELTAMISHMGASARTGHYVCHIKDGATGKW LLFNDEKVGESQNPPFSLASLYFFQRKA

  • title: Active Site
  • coordinates: N307,C312,H707,D725
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.29.2300689 SDGAASYELT0.993unspLmjF.29.2300689 SDGAASYELT0.993unspLmjF.29.2300689 SDGAASYELT0.993unspLmjF.29.2300497 SRPRCSLEDC0.997unspLmjF.29.2300559 YKMDAYVEVP0.99unsp

LmjF.29.2300      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India