LmjF.30.0400 | Alpha/beta hydrolase family, putative

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_IDPredictionOTHERSPmTPCS_Position
LmjF.30.0400OTHER0.9777930.0112390.010968
No Results

  • Fasta :-

    >LmjF.30.0400 MISARDAILQLTSGPSLMDSMCNFIIRPPRSTYEIDDLGPGVFRIGDDCTERFMRHDFEL ENMRGLRFQCSWFKPYPARRVPCVVYCHANCGGRYDGLEALFLLQEGFSLFCFDFCGSGM SEGEYISLGFYERQDLVAIVEFLSLKSDEVDGVALWGRSMGAVATIMYASKDPWIRCIVC DSPFASLRLLIDDLVERHGGRTARVLPKILVHGIVERIRKRIMKRAAFDIDDLDAVKYAK ACGVPSLLFHGADDDFVSPVHCEMIRDAFPIPCLQQFTPGGHNCERQEDIHVLIRAFLRL YLIDKPQGAREMQAVRELQLANTASPAAVSSAAAAAATKAATPRPSEPAAPAPKQLVPPA CYGMRCAGTALISSSSTSATASSPTTSLSTSASSSTSFDSSLPSPAALSVPLSPENRLVY DCSN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/413 Sequence name : 413 Sequence length : 424 VALUES OF COMPUTED PARAMETERS Coef20 : 4.209 CoefTot : 0.388 ChDiff : -6 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.324 1.429 0.217 0.568 MesoH : 0.450 0.564 -0.091 0.301 MuHd_075 : 28.549 18.135 7.562 5.726 MuHd_095 : 14.651 4.613 3.494 2.314 MuHd_100 : 16.980 7.610 3.377 3.293 MuHd_105 : 17.980 12.199 3.605 4.162 Hmax_075 : 14.900 14.200 2.511 4.737 Hmax_095 : 12.900 11.400 1.694 4.320 Hmax_100 : 15.700 14.100 1.973 5.140 Hmax_105 : 16.900 15.300 2.560 5.500 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8678 0.1322 DFMC : 0.8504 0.1496
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 424 LmjF.30.0400 MISARDAILQLTSGPSLMDSMCNFIIRPPRSTYEIDDLGPGVFRIGDDCTERFMRHDFELENMRGLRFQCSWFKPYPARR 80 VPCVVYCHANCGGRYDGLEALFLLQEGFSLFCFDFCGSGMSEGEYISLGFYERQDLVAIVEFLSLKSDEVDGVALWGRSM 160 GAVATIMYASKDPWIRCIVCDSPFASLRLLIDDLVERHGGRTARVLPKILVHGIVERIRKRIMKRAAFDIDDLDAVKYAK 240 ACGVPSLLFHGADDDFVSPVHCEMIRDAFPIPCLQQFTPGGHNCERQEDIHVLIRAFLRLYLIDKPQGAREMQAVRELQL 320 ANTASPAAVSSAAAAAATKAATPRPSEPAAPAPKQLVPPACYGMRCAGTALISSSSTSATASSPTTSLSTSASSSTSFDS 400 SLPSPAALSVPLSPENRLVYDCSN 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.30.0400 5 --MISAR|DA 0.212 . LmjF.30.0400 27 MCNFIIR|PP 0.081 . LmjF.30.0400 30 FIIRPPR|ST 0.451 . LmjF.30.0400 44 LGPGVFR|IG 0.084 . LmjF.30.0400 52 GDDCTER|FM 0.082 . LmjF.30.0400 55 CTERFMR|HD 0.291 . LmjF.30.0400 64 FELENMR|GL 0.082 . LmjF.30.0400 67 ENMRGLR|FQ 0.216 . LmjF.30.0400 74 FQCSWFK|PY 0.058 . LmjF.30.0400 79 FKPYPAR|RV 0.116 . LmjF.30.0400 80 KPYPARR|VP 0.133 . LmjF.30.0400 94 HANCGGR|YD 0.092 . LmjF.30.0400 133 SLGFYER|QD 0.084 . LmjF.30.0400 146 VEFLSLK|SD 0.073 . LmjF.30.0400 158 GVALWGR|SM 0.216 . LmjF.30.0400 171 TIMYASK|DP 0.064 . LmjF.30.0400 176 SKDPWIR|CI 0.076 . LmjF.30.0400 188 SPFASLR|LL 0.100 . LmjF.30.0400 197 IDDLVER|HG 0.079 . LmjF.30.0400 201 VERHGGR|TA 0.092 . LmjF.30.0400 204 HGGRTAR|VL 0.381 . LmjF.30.0400 208 TARVLPK|IL 0.077 . LmjF.30.0400 217 VHGIVER|IR 0.078 . LmjF.30.0400 219 GIVERIR|KR 0.079 . LmjF.30.0400 220 IVERIRK|RI 0.163 . LmjF.30.0400 221 VERIRKR|IM 0.153 . LmjF.30.0400 224 IRKRIMK|RA 0.159 . LmjF.30.0400 225 RKRIMKR|AA 0.340 . LmjF.30.0400 237 DDLDAVK|YA 0.063 . LmjF.30.0400 240 DAVKYAK|AC 0.063 . LmjF.30.0400 266 VHCEMIR|DA 0.118 . LmjF.30.0400 286 GGHNCER|QE 0.092 . LmjF.30.0400 295 DIHVLIR|AF 0.070 . LmjF.30.0400 299 LIRAFLR|LY 0.081 . LmjF.30.0400 305 RLYLIDK|PQ 0.074 . LmjF.30.0400 310 DKPQGAR|EM 0.083 . LmjF.30.0400 316 REMQAVR|EL 0.083 . LmjF.30.0400 339 AAAAATK|AA 0.070 . LmjF.30.0400 344 TKAATPR|PS 0.152 . LmjF.30.0400 354 PAAPAPK|QL 0.061 . LmjF.30.0400 365 PACYGMR|CA 0.147 . LmjF.30.0400 417 PLSPENR|LV 0.119 . ____________________________^_________________

  • Fasta :-

    >LmjF.30.0400 ATGATCAGTGCCAGGGACGCCATTCTCCAGCTGACCTCAGGCCCGAGCCTGATGGACAGC ATGTGCAACTTTATTATTCGGCCGCCTCGGTCCACCTACGAGATTGACGACCTTGGGCCT GGCGTGTTCCGCATCGGCGACGATTGCACGGAGCGCTTCATGCGCCACGACTTTGAGCTG GAGAACATGCGGGGTTTGCGCTTCCAGTGCTCGTGGTTCAAGCCCTATCCTGCCCGCCGT GTGCCGTGCGTGGTGTACTGCCACGCGAATTGCGGCGGGCGCTACGACGGCCTCGAGGCT CTCTTTCTGCTGCAGGAAGGCTTCAGCCTCTTCTGCTTCGACTTCTGCGGGAGCGGCATG TCGGAGGGTGAGTACATCTCCCTCGGCTTCTACGAGCGCCAGGACCTGGTCGCCATCGTC GAGTTTCTCTCGCTCAAGAGCGACGAGGTGGACGGAGTGGCGCTGTGGGGCCGCAGCATG GGCGCCGTAGCCACCATCATGTACGCCTCGAAGGATCCGTGGATTCGTTGTATTGTTTGC GATTCGCCCTTCGCATCCCTGCGGTTGCTCATCGACGATTTGGTGGAGCGACATGGTGGG CGAACGGCCCGGGTTCTGCCAAAGATTTTGGTGCACGGGATTGTGGAGCGCATCCGTAAG CGCATCATGAAGCGAGCCGCTTTCGACATCGACGACTTGGACGCGGTCAAGTACGCCAAG GCGTGCGGCGTGCCCTCACTGCTGTTCCACGGCGCTGACGACGACTTTGTGTCCCCAGTG CACTGTGAGATGATTCGTGACGCCTTTCCCATTCCTTGCCTGCAGCAGTTCACGCCAGGC GGGCACAACTGCGAACGCCAAGAAGACATTCACGTACTCATCAGGGCCTTTCTGCGGCTC TACCTGATCGACAAGCCACAAGGAGCACGAGAGATGCAGGCGGTGCGTGAGCTCCAACTC GCCAATACTGCTTCACCCGCCGCCGTGTCGTCGGCGGCAGCAGCAGCAGCAACCAAGGCC GCCACCCCGCGGCCAAGTGAGCCTGCTGCTCCAGCACCGAAGCAGCTCGTACCACCGGCA TGCTATGGTATGCGGTGCGCTGGGACGGCGCTGATCTCTTCTTCTTCCACGTCGGCGACT GCGTCGTCCCCCACCACCTCTCTGTCGACATCTGCGTCGTCATCGACATCGTTCGACTCT TCCCTGCCTTCGCCAGCGGCGCTAAGTGTGCCACTGTCGCCAGAGAACAGGTTGGTCTAC GACTGCTCCAACTAG
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  • Fasta :-

    MISARDAILQLTSGPSLMDSMCNFIIRPPRSTYEIDDLGPGVFRIGDDCTERFMRHDFEL ENMRGLRFQCSWFKPYPARRVPCVVYCHANCGGRYDGLEALFLLQEGFSLFCFDFCGSGM SEGEYISLGFYERQDLVAIVEFLSLKSDEVDGVALWGRSMGAVATIMYASKDPWIRCIVC DSPFASLRLLIDDLVERHGGRTARVLPKILVHGIVERIRKRIMKRAAFDIDDLDAVKYAK ACGVPSLLFHGADDDFVSPVHCEMIRDAFPIPCLQQFTPGGHNCERQEDIHVLIRAFLRL YLIDKPQGAREMQAVRELQLANTASPAAVSSAAAAAATKAATPRPSEPAAPAPKQLVPPA CYGMRCAGTALISSSSTSATASSPTTSLSTSASSSTSFDSSLPSPAALSVPLSPENRLVY DCSN

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.30.0400413 SSVPLSPENR0.99unspLmjF.30.0400413 SSVPLSPENR0.99unspLmjF.30.0400413 SSVPLSPENR0.99unspLmjF.30.040031 SRPPRSTYEI0.997unspLmjF.30.0400125 YSEGEYISLG0.991unsp

LmjF.30.0400      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India