LmjF.31.0440 | cytoskeleton-associated protein CAP5.5, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.31.0440OTHER0.9999370.0000090.000055
No Results

  • Fasta :-

    >LmjF.31.0440 MGCCNSKETKKPKEEVLQREAQYAKVSSETDSVEEQPNIEARVASVVKDLRAERIDAICA HSHACPYRYNACTVVGGEVKFYFEGGIIFCIVKEGSWYIYNDSLDYEAHVTVRFGPGSNI AAGQRAELGEVEDGWTCIRAIVYPLETVHLVSGTANGYKTHITIKPLNEQYRHEACAAAN GTAEAETEAVRSLVTEGMDEEAILHRCVETTTPYVDLTFPPNGEAVARAGRDTRTIPEVA MMRPTQYLLDNNCLSVNDICGPVLALSIEPGNLGDSWFMCAVAIMAENEAAVRSIFAQGS PAEKAVGAYRVLVNKNGWWHTLIMDDYLPTFNRMPVFARSYDNPAEVWTSLLQKAYAKLH GSYAAITGGDTLQALADLSGAPMCRFDKEWEEATTDAEKADTLANALVQFSRSGACVVLS TPGHNSESYLGRSQASDAAAFRARYKKVGLHVGYTYSLERVVMVEECGTLLFKVRNPWRS SSKWTGPWSYGSREWDENQDACLLCGAQKDPQDGSFWMCWDDASRYFDGGGVLFANPDAV DYRVKGVFCKTIPSAVLEITASESTQVFFTLSQPDKRGVDRKEGAALFAPIMLTVSKEED GVQRVQKNTSWNPTMPSEEFNFVVGRDVSMWFTLGAEEKYLVVPRIHSKGVKSDYDRPYV ISIMSTDKLEGNVRVEAKHIHSDSKVFTNYIAYDSEELPSVKVENQVRLPGKAPVTYVSA TVI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/122 Sequence name : 122 Sequence length : 723 VALUES OF COMPUTED PARAMETERS Coef20 : 3.167 CoefTot : -0.385 ChDiff : -23 ZoneTo : 7 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.947 1.265 0.137 0.558 MesoH : -0.334 0.486 -0.271 0.271 MuHd_075 : 11.885 9.290 4.063 2.853 MuHd_095 : 26.939 12.630 5.962 5.040 MuHd_100 : 26.914 10.508 5.977 4.696 MuHd_105 : 24.572 11.777 7.105 3.654 Hmax_075 : -6.475 1.100 -2.579 0.850 Hmax_095 : -1.750 0.525 -2.301 0.971 Hmax_100 : -5.000 -1.300 -3.605 0.770 Hmax_105 : 0.467 2.217 -0.596 0.805 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8783 0.1217 DFMC : 0.8959 0.1041
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 723 LmjF.31.0440 MGCCNSKETKKPKEEVLQREAQYAKVSSETDSVEEQPNIEARVASVVKDLRAERIDAICAHSHACPYRYNACTVVGGEVK 80 FYFEGGIIFCIVKEGSWYIYNDSLDYEAHVTVRFGPGSNIAAGQRAELGEVEDGWTCIRAIVYPLETVHLVSGTANGYKT 160 HITIKPLNEQYRHEACAAANGTAEAETEAVRSLVTEGMDEEAILHRCVETTTPYVDLTFPPNGEAVARAGRDTRTIPEVA 240 MMRPTQYLLDNNCLSVNDICGPVLALSIEPGNLGDSWFMCAVAIMAENEAAVRSIFAQGSPAEKAVGAYRVLVNKNGWWH 320 TLIMDDYLPTFNRMPVFARSYDNPAEVWTSLLQKAYAKLHGSYAAITGGDTLQALADLSGAPMCRFDKEWEEATTDAEKA 400 DTLANALVQFSRSGACVVLSTPGHNSESYLGRSQASDAAAFRARYKKVGLHVGYTYSLERVVMVEECGTLLFKVRNPWRS 480 SSKWTGPWSYGSREWDENQDACLLCGAQKDPQDGSFWMCWDDASRYFDGGGVLFANPDAVDYRVKGVFCKTIPSAVLEIT 560 ASESTQVFFTLSQPDKRGVDRKEGAALFAPIMLTVSKEEDGVQRVQKNTSWNPTMPSEEFNFVVGRDVSMWFTLGAEEKY 640 LVVPRIHSKGVKSDYDRPYVISIMSTDKLEGNVRVEAKHIHSDSKVFTNYIAYDSEELPSVKVENQVRLPGKAPVTYVSA 720 TVI 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.31.0440 7 MGCCNSK|ET 0.059 . LmjF.31.0440 10 CNSKETK|KP 0.068 . LmjF.31.0440 11 NSKETKK|PK 0.121 . LmjF.31.0440 13 KETKKPK|EE 0.066 . LmjF.31.0440 19 KEEVLQR|EA 0.097 . LmjF.31.0440 25 REAQYAK|VS 0.065 . LmjF.31.0440 42 QPNIEAR|VA 0.169 . LmjF.31.0440 48 RVASVVK|DL 0.086 . LmjF.31.0440 51 SVVKDLR|AE 0.070 . LmjF.31.0440 54 KDLRAER|ID 0.162 . LmjF.31.0440 68 SHACPYR|YN 0.116 . LmjF.31.0440 80 VVGGEVK|FY 0.070 . LmjF.31.0440 93 IIFCIVK|EG 0.058 . LmjF.31.0440 113 EAHVTVR|FG 0.100 . LmjF.31.0440 125 NIAAGQR|AE 0.076 . LmjF.31.0440 139 DGWTCIR|AI 0.080 . LmjF.31.0440 159 GTANGYK|TH 0.062 . LmjF.31.0440 165 KTHITIK|PL 0.074 . LmjF.31.0440 172 PLNEQYR|HE 0.097 . LmjF.31.0440 191 AETEAVR|SL 0.115 . LmjF.31.0440 206 EEAILHR|CV 0.138 . LmjF.31.0440 228 NGEAVAR|AG 0.108 . LmjF.31.0440 231 AVARAGR|DT 0.399 . LmjF.31.0440 234 RAGRDTR|TI 0.275 . LmjF.31.0440 243 PEVAMMR|PT 0.082 . LmjF.31.0440 293 ENEAAVR|SI 0.135 . LmjF.31.0440 304 QGSPAEK|AV 0.103 . LmjF.31.0440 310 KAVGAYR|VL 0.081 . LmjF.31.0440 315 YRVLVNK|NG 0.062 . LmjF.31.0440 333 YLPTFNR|MP 0.070 . LmjF.31.0440 339 RMPVFAR|SY 0.151 . LmjF.31.0440 354 WTSLLQK|AY 0.069 . LmjF.31.0440 358 LQKAYAK|LH 0.064 . LmjF.31.0440 385 SGAPMCR|FD 0.120 . LmjF.31.0440 388 PMCRFDK|EW 0.153 . LmjF.31.0440 399 ATTDAEK|AD 0.055 . LmjF.31.0440 412 ALVQFSR|SG 0.112 . LmjF.31.0440 432 SESYLGR|SQ 0.151 . LmjF.31.0440 442 SDAAAFR|AR 0.100 . LmjF.31.0440 444 AAAFRAR|YK 0.159 . LmjF.31.0440 446 AFRARYK|KV 0.086 . LmjF.31.0440 447 FRARYKK|VG 0.330 . LmjF.31.0440 460 YTYSLER|VV 0.108 . LmjF.31.0440 473 CGTLLFK|VR 0.055 . LmjF.31.0440 475 TLLFKVR|NP 0.079 . LmjF.31.0440 479 KVRNPWR|SS 0.189 . LmjF.31.0440 483 PWRSSSK|WT 0.080 . LmjF.31.0440 493 PWSYGSR|EW 0.120 . LmjF.31.0440 509 LLCGAQK|DP 0.073 . LmjF.31.0440 525 CWDDASR|YF 0.102 . LmjF.31.0440 543 PDAVDYR|VK 0.102 . LmjF.31.0440 545 AVDYRVK|GV 0.073 . LmjF.31.0440 550 VKGVFCK|TI 0.071 . LmjF.31.0440 576 TLSQPDK|RG 0.064 . LmjF.31.0440 577 LSQPDKR|GV 0.496 . LmjF.31.0440 581 DKRGVDR|KE 0.138 . LmjF.31.0440 582 KRGVDRK|EG 0.100 . LmjF.31.0440 597 IMLTVSK|EE 0.066 . LmjF.31.0440 604 EEDGVQR|VQ 0.065 . LmjF.31.0440 607 GVQRVQK|NT 0.244 . LmjF.31.0440 626 FNFVVGR|DV 0.228 . LmjF.31.0440 639 TLGAEEK|YL 0.069 . LmjF.31.0440 645 KYLVVPR|IH 0.112 . LmjF.31.0440 649 VPRIHSK|GV 0.083 . LmjF.31.0440 652 IHSKGVK|SD 0.088 . LmjF.31.0440 657 VKSDYDR|PY 0.101 . LmjF.31.0440 668 SIMSTDK|LE 0.065 . LmjF.31.0440 674 KLEGNVR|VE 0.080 . LmjF.31.0440 678 NVRVEAK|HI 0.079 . LmjF.31.0440 685 HIHSDSK|VF 0.062 . LmjF.31.0440 702 EELPSVK|VE 0.056 . LmjF.31.0440 708 KVENQVR|LP 0.101 . LmjF.31.0440 712 QVRLPGK|AP 0.067 . ____________________________^_________________

  • Fasta :-

    >LmjF.31.0440 ATGGGGTGCTGCAACTCGAAGGAGACGAAGAAACCGAAGGAGGAAGTGCTGCAGCGGGAG GCTCAGTATGCGAAGGTGTCAAGTGAGACGGATAGTGTGGAAGAGCAGCCCAATATTGAG GCTAGAGTGGCGAGTGTGGTGAAGGATCTGCGCGCTGAGCGCATCGACGCCATCTGCGCC CACAGTCATGCCTGTCCCTACCGCTATAACGCCTGCACTGTCGTGGGCGGAGAAGTGAAG TTCTACTTCGAGGGTGGCATCATTTTCTGCATCGTGAAGGAGGGCTCGTGGTACATCTAC AACGACTCCCTTGACTACGAGGCGCATGTGACCGTACGCTTCGGCCCGGGCTCGAATATC GCTGCTGGACAGCGGGCAGAGCTGGGGGAGGTAGAGGATGGCTGGACGTGCATACGCGCC ATCGTGTACCCGCTGGAGACGGTGCATTTGGTCTCCGGCACCGCCAACGGCTACAAGACC CACATCACTATCAAGCCCCTCAATGAACAGTACCGTCACGAGGCGTGTGCGGCTGCCAAC GGCACTGCCGAAGCGGAGACAGAGGCCGTTCGATCTCTTGTCACCGAAGGGATGGACGAG GAGGCGATTCTGCACCGCTGCGTGGAGACAACAACGCCTTACGTCGACCTGACGTTCCCG CCGAACGGCGAGGCCGTCGCACGCGCCGGCAGGGACACCCGCACCATCCCCGAGGTGGCC ATGATGCGCCCGACACAGTACCTGCTGGATAATAACTGCCTTTCGGTGAACGACATTTGC GGGCCAGTGCTGGCCCTGTCCATCGAACCGGGAAACCTCGGCGACTCGTGGTTTATGTGC GCTGTGGCCATCATGGCGGAGAATGAGGCGGCGGTCCGAAGCATTTTCGCACAGGGCTCA CCGGCGGAGAAGGCGGTGGGTGCGTACCGCGTGCTGGTCAACAAAAACGGCTGGTGGCAC ACTCTCATTATGGACGACTACTTGCCCACGTTCAACCGCATGCCTGTGTTTGCGCGCTCG TACGACAATCCGGCGGAGGTGTGGACCTCGTTGCTGCAAAAGGCGTATGCGAAGCTGCAC GGCTCCTATGCCGCAATCACCGGCGGCGACACTTTGCAGGCGCTCGCGGACTTGAGCGGC GCGCCGATGTGCCGTTTCGACAAGGAGTGGGAGGAGGCAACGACGGACGCGGAAAAGGCA GACACACTGGCCAATGCGCTGGTGCAGTTTTCCCGCTCTGGCGCCTGTGTTGTGCTCAGC ACTCCAGGCCACAATTCAGAGAGCTACCTGGGCCGCAGTCAGGCGAGCGATGCGGCGGCG TTCCGCGCCCGCTACAAGAAGGTTGGCTTACATGTCGGCTACACGTACTCCTTAGAGCGC GTTGTGATGGTCGAGGAGTGCGGCACCCTGCTGTTCAAGGTGCGCAACCCTTGGCGCTCG TCGAGCAAGTGGACTGGACCATGGAGCTACGGTTCGAGGGAGTGGGATGAGAATCAGGAT GCCTGCCTCCTCTGCGGCGCCCAGAAGGACCCGCAGGATGGCAGTTTCTGGATGTGCTGG GATGACGCCAGCCGGTACTTCGACGGAGGCGGTGTTCTGTTTGCGAACCCCGACGCGGTG GACTACCGTGTGAAGGGCGTGTTTTGCAAGACGATCCCAAGCGCGGTTCTTGAAATCACG GCGTCGGAGTCCACCCAGGTGTTCTTCACCCTCTCGCAACCCGACAAGCGCGGCGTGGAC CGTAAGGAGGGCGCGGCGCTCTTTGCTCCGATTATGCTCACCGTGTCCAAGGAGGAGGAC GGCGTGCAGCGGGTGCAGAAGAACACCAGCTGGAACCCGACGATGCCCTCTGAGGAGTTC AACTTTGTTGTCGGCCGTGACGTCTCCATGTGGTTCACGCTGGGGGCCGAGGAGAAGTAC CTGGTTGTGCCGCGCATACACTCCAAGGGCGTCAAGAGCGACTACGATCGACCGTACGTG ATCAGCATAATGTCGACCGATAAGTTGGAGGGCAACGTTCGGGTGGAAGCGAAGCACATT CACAGCGACTCGAAGGTGTTCACGAACTATATCGCCTACGATTCGGAGGAGCTGCCCTCG GTCAAGGTGGAGAACCAGGTGAGGCTTCCTGGCAAGGCCCCCGTGACGTACGTGTCCGCC ACGGTGATTTGA
  • Download Fasta

  • Fasta :-

    MGCCNSKETKKPKEEVLQREAQYAKVSSETDSVEEQPNIEARVASVVKDLRAERIDAICA HSHACPYRYNACTVVGGEVKFYFEGGIIFCIVKEGSWYIYNDSLDYEAHVTVRFGPGSNI AAGQRAELGEVEDGWTCIRAIVYPLETVHLVSGTANGYKTHITIKPLNEQYRHEACAAAN GTAEAETEAVRSLVTEGMDEEAILHRCVETTTPYVDLTFPPNGEAVARAGRDTRTIPEVA MMRPTQYLLDNNCLSVNDICGPVLALSIEPGNLGDSWFMCAVAIMAENEAAVRSIFAQGS PAEKAVGAYRVLVNKNGWWHTLIMDDYLPTFNRMPVFARSYDNPAEVWTSLLQKAYAKLH GSYAAITGGDTLQALADLSGAPMCRFDKEWEEATTDAEKADTLANALVQFSRSGACVVLS TPGHNSESYLGRSQASDAAAFRARYKKVGLHVGYTYSLERVVMVEECGTLLFKVRNPWRS SSKWTGPWSYGSREWDENQDACLLCGAQKDPQDGSFWMCWDDASRYFDGGGVLFANPDAV DYRVKGVFCKTIPSAVLEITASESTQVFFTLSQPDKRGVDRKEGAALFAPIMLTVSKEED GVQRVQKNTSWNPTMPSEEFNFVVGRDVSMWFTLGAEEKYLVVPRIHSKGVKSDYDRPYV ISIMSTDKLEGNVRVEAKHIHSDSKVFTNYIAYDSEELPSVKVENQVRLPGKAPVTYVSA TVI

  • title: catalytic site
  • coordinates: S276,Y454,N476
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.31.0440481 SPWRSSSKWT0.991unspLmjF.31.0440481 SPWRSSSKWT0.991unspLmjF.31.0440481 SPWRSSSKWT0.991unspLmjF.31.0440596 SMLTVSKEED0.993unspLmjF.31.0440653 SKGVKSDYDR0.996unspLmjF.31.044028 SAKVSSETDS0.995unspLmjF.31.044032 SSETDSVEEQ0.998unsp

LmjF.31.0440      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India