LmjF.31.2020 | succinyl-diaminopimelate desuccinylase-like protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0016787      

  • Computed_GO_Functions:  hydrolase activity      

  • Computed_GO_Process_IDs:  GO:0008152      

  • Computed_GO_Processes:  metabolic process      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
LmjF.31.2020OTHER0.9995370.0003910.000072
No Results

  • Fasta :-

    >LmjF.31.2020 MRAPPLAHDSLSTAHPSPSRSPLRPTPCALAPPPSATDADYTSSPPPPPTQTHPFVFPLA SSPIDHHRAVPSSSPHRRSLPLSLCPRCPSTTAHRPLSPFCTFATMSALWAQVRQTVESE WDKTIVPAISAYIEVPNQSPQFDPEWATNGLQEKAFGILIDWMNAQNVQGLTYDYITADG RTPFLLVEIAGTEPTNNTVLMYGHMDKQPPLRPWAEGLDPHKAVVRDGKLYGRGGADDGY ALFAAVTAISSLQRHGIPHGRVVITIEAGEESGSPDLDYYMERCKERIGKVDLMVCLDSG SMNYSQVWLTTSLRGVAIGELTVQTLTESMHSGVAGGVVPDTFRITRELLSRIEDCKTGE VTIPEAHCEIPPNAVKAAEAMKTVPFKEQFAMAAGVATVPGDNVELAIQNFWKPSLTVTG ANLPDPQIAGNVIRTHTTVKLSMRLPPLVKAEAALQAMKRILEADPPYGAKVAFKGVGAG NGCAAPELKPWLQEVLHEGSTEAFGNTYACQGMGGAIPFIGMLIDMYPEAQFVVTGLLGP QSNAHGPNEFLHIPYAKGLTYSIARVVAAHLHNTPK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/703 Sequence name : 703 Sequence length : 576 VALUES OF COMPUTED PARAMETERS Coef20 : 3.731 CoefTot : -0.835 ChDiff : -10 ZoneTo : 37 KR : 3 DE : 1 CleavSite : 26 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.588 1.294 0.268 0.633 MesoH : 0.098 0.361 -0.246 0.334 MuHd_075 : 28.277 11.761 6.896 4.863 MuHd_095 : 35.402 19.703 7.768 7.888 MuHd_100 : 29.337 16.944 6.358 6.432 MuHd_105 : 27.335 17.282 7.963 5.297 Hmax_075 : 5.600 3.400 -0.700 1.517 Hmax_095 : 6.800 10.600 0.017 2.713 Hmax_100 : 5.800 6.900 1.103 2.220 Hmax_105 : 10.000 6.900 1.103 2.800 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2696 0.7304 DFMC : 0.3415 0.6585 This protein is probably imported in mitochondria. f(Ser) = 0.1622 f(Arg) = 0.0811 CMi = 0.88365 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 576 LmjF.31.2020 MRAPPLAHDSLSTAHPSPSRSPLRPTPCALAPPPSATDADYTSSPPPPPTQTHPFVFPLASSPIDHHRAVPSSSPHRRSL 80 PLSLCPRCPSTTAHRPLSPFCTFATMSALWAQVRQTVESEWDKTIVPAISAYIEVPNQSPQFDPEWATNGLQEKAFGILI 160 DWMNAQNVQGLTYDYITADGRTPFLLVEIAGTEPTNNTVLMYGHMDKQPPLRPWAEGLDPHKAVVRDGKLYGRGGADDGY 240 ALFAAVTAISSLQRHGIPHGRVVITIEAGEESGSPDLDYYMERCKERIGKVDLMVCLDSGSMNYSQVWLTTSLRGVAIGE 320 LTVQTLTESMHSGVAGGVVPDTFRITRELLSRIEDCKTGEVTIPEAHCEIPPNAVKAAEAMKTVPFKEQFAMAAGVATVP 400 GDNVELAIQNFWKPSLTVTGANLPDPQIAGNVIRTHTTVKLSMRLPPLVKAEAALQAMKRILEADPPYGAKVAFKGVGAG 480 NGCAAPELKPWLQEVLHEGSTEAFGNTYACQGMGGAIPFIGMLIDMYPEAQFVVTGLLGPQSNAHGPNEFLHIPYAKGLT 560 YSIARVVAAHLHNTPK 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................ 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.31.2020 2 -----MR|AP 0.081 . LmjF.31.2020 20 AHPSPSR|SP 0.080 . LmjF.31.2020 24 PSRSPLR|PT 0.101 . LmjF.31.2020 68 SPIDHHR|AV 0.158 . LmjF.31.2020 77 PSSSPHR|RS 0.075 . LmjF.31.2020 78 SSSPHRR|SL 0.410 . LmjF.31.2020 87 PLSLCPR|CP 0.094 . LmjF.31.2020 95 PSTTAHR|PL 0.084 . LmjF.31.2020 114 ALWAQVR|QT 0.104 . LmjF.31.2020 123 VESEWDK|TI 0.070 . LmjF.31.2020 154 TNGLQEK|AF 0.088 . LmjF.31.2020 181 YITADGR|TP 0.065 . LmjF.31.2020 207 MYGHMDK|QP 0.056 . LmjF.31.2020 212 DKQPPLR|PW 0.114 . LmjF.31.2020 222 EGLDPHK|AV 0.065 . LmjF.31.2020 226 PHKAVVR|DG 0.093 . LmjF.31.2020 229 AVVRDGK|LY 0.168 . LmjF.31.2020 233 DGKLYGR|GG 0.078 . LmjF.31.2020 254 AISSLQR|HG 0.109 . LmjF.31.2020 261 HGIPHGR|VV 0.172 . LmjF.31.2020 283 LDYYMER|CK 0.101 . LmjF.31.2020 285 YYMERCK|ER 0.059 . LmjF.31.2020 287 MERCKER|IG 0.097 . LmjF.31.2020 290 CKERIGK|VD 0.100 . LmjF.31.2020 314 WLTTSLR|GV 0.144 . LmjF.31.2020 344 VVPDTFR|IT 0.077 . LmjF.31.2020 347 DTFRITR|EL 0.142 . LmjF.31.2020 352 TRELLSR|IE 0.095 . LmjF.31.2020 357 SRIEDCK|TG 0.068 . LmjF.31.2020 376 IPPNAVK|AA 0.073 . LmjF.31.2020 382 KAAEAMK|TV 0.077 . LmjF.31.2020 387 MKTVPFK|EQ 0.072 . LmjF.31.2020 413 AIQNFWK|PS 0.070 . LmjF.31.2020 434 IAGNVIR|TH 0.106 . LmjF.31.2020 440 RTHTTVK|LS 0.061 . LmjF.31.2020 444 TVKLSMR|LP 0.074 . LmjF.31.2020 450 RLPPLVK|AE 0.058 . LmjF.31.2020 459 AALQAMK|RI 0.058 . LmjF.31.2020 460 ALQAMKR|IL 0.216 . LmjF.31.2020 471 DPPYGAK|VA 0.080 . LmjF.31.2020 475 GAKVAFK|GV 0.157 . LmjF.31.2020 489 CAAPELK|PW 0.067 . LmjF.31.2020 557 LHIPYAK|GL 0.076 . LmjF.31.2020 565 LTYSIAR|VV 0.125 . LmjF.31.2020 576 HLHNTPK|-- 0.078 . ____________________________^_________________

  • Fasta :-

    >LmjF.31.2020 ATGCGAGCTCCTCCACTCGCACATGACTCGCTCTCCACCGCGCATCCGTCCCCCTCTCGC TCTCCGCTTCGCCCTACGCCCTGTGCTCTTGCACCGCCTCCGAGCGCCACAGACGCTGAC TACACAAGCTCACCCCCCCCTCCACCCACACAGACACATCCTTTCGTTTTTCCTCTAGCT TCATCGCCTATCGACCACCATCGTGCTGTTCCATCCTCCTCTCCGCACAGACGCTCTCTC CCTCTCTCTCTCTGTCCTCGCTGTCCTTCCACCACTGCTCACCGCCCTCTCTCTCCTTTC TGCACCTTCGCCACCATGTCCGCTCTCTGGGCCCAGGTGAGGCAGACAGTGGAGTCCGAG TGGGATAAGACGATCGTGCCGGCCATCTCTGCCTACATCGAGGTGCCGAACCAGAGCCCG CAGTTCGATCCGGAGTGGGCCACCAATGGCCTGCAGGAGAAGGCCTTTGGCATCCTCATC GATTGGATGAATGCACAGAACGTGCAGGGGCTCACGTACGACTATATCACCGCGGATGGC CGCACGCCGTTCCTCCTCGTCGAGATCGCCGGCACCGAGCCGACCAACAACACGGTGCTC ATGTACGGTCACATGGACAAGCAGCCGCCTCTCCGCCCGTGGGCGGAGGGTCTCGACCCC CACAAGGCGGTGGTGCGCGATGGCAAGCTGTACGGCCGCGGTGGCGCCGATGACGGCTAC GCGCTCTTTGCCGCCGTCACCGCCATCTCGTCGCTGCAGCGCCACGGCATCCCGCACGGC CGTGTCGTGATCACGATCGAGGCCGGCGAGGAGTCGGGCAGCCCGGACCTGGACTACTAC ATGGAGCGCTGCAAGGAGCGCATCGGCAAGGTGGACCTCATGGTGTGCCTGGACAGCGGC AGCATGAACTACTCGCAGGTGTGGCTCACGACGTCGCTGCGCGGCGTTGCGATCGGCGAG CTGACAGTGCAGACGCTGACGGAGAGCATGCACAGTGGCGTCGCCGGCGGCGTTGTGCCT GACACGTTCCGCATCACGCGCGAGCTCCTCAGCCGCATCGAGGACTGCAAGACGGGCGAG GTGACGATCCCGGAGGCCCACTGCGAGATCCCGCCCAACGCGGTCAAGGCGGCGGAGGCG ATGAAGACGGTGCCGTTCAAGGAGCAGTTTGCGATGGCGGCGGGCGTGGCGACGGTGCCT GGCGACAACGTCGAGCTGGCGATTCAGAACTTTTGGAAGCCGAGCCTTACCGTGACGGGC GCCAACCTGCCGGACCCGCAGATCGCCGGCAACGTCATCCGCACCCACACAACGGTGAAG CTTTCCATGCGCCTGCCACCCCTGGTGAAGGCCGAGGCTGCACTGCAGGCGATGAAGCGC ATCCTGGAGGCGGACCCGCCGTACGGCGCCAAGGTGGCCTTCAAGGGCGTGGGCGCCGGC AACGGCTGTGCTGCGCCGGAGCTGAAGCCGTGGCTGCAGGAGGTGCTGCACGAGGGCAGC ACCGAGGCCTTCGGCAACACGTACGCGTGCCAGGGCATGGGTGGCGCCATCCCGTTCATC GGCATGCTCATCGACATGTATCCAGAGGCGCAGTTCGTCGTGACGGGTCTCCTCGGTCCG CAGAGCAACGCGCACGGGCCGAACGAGTTCCTGCACATCCCGTACGCTAAGGGGTTGACG TACAGCATCGCGCGCGTCGTGGCGGCGCACCTCCACAACACGCCCAAGTGA
  • Download Fasta

  • Fasta :-

    MRAPPLAHDSLSTAHPSPSRSPLRPTPCALAPPPSATDADYTSSPPPPPTQTHPFVFPLA SSPIDHHRAVPSSSPHRRSLPLSLCPRCPSTTAHRPLSPFCTFATMSALWAQVRQTVESE WDKTIVPAISAYIEVPNQSPQFDPEWATNGLQEKAFGILIDWMNAQNVQGLTYDYITADG RTPFLLVEIAGTEPTNNTVLMYGHMDKQPPLRPWAEGLDPHKAVVRDGKLYGRGGADDGY ALFAAVTAISSLQRHGIPHGRVVITIEAGEESGSPDLDYYMERCKERIGKVDLMVCLDSG SMNYSQVWLTTSLRGVAIGELTVQTLTESMHSGVAGGVVPDTFRITRELLSRIEDCKTGE VTIPEAHCEIPPNAVKAAEAMKTVPFKEQFAMAAGVATVPGDNVELAIQNFWKPSLTVTG ANLPDPQIAGNVIRTHTTVKLSMRLPPLVKAEAALQAMKRILEADPPYGAKVAFKGVGAG NGCAAPELKPWLQEVLHEGSTEAFGNTYACQGMGGAIPFIGMLIDMYPEAQFVVTGLLGP QSNAHGPNEFLHIPYAKGLTYSIARVVAAHLHNTPK

  • title: metal binding site
  • coordinates: H204,D237,E270,E271,D298,H545
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.31.202098 SHRPLSPFCT0.996unspLmjF.31.202098 SHRPLSPFCT0.996unspLmjF.31.202098 SHRPLSPFCT0.996unspLmjF.31.2020351 SRELLSRIED0.993unspLmjF.31.202017 STAHPSPSRS0.991unspLmjF.31.202062 SPLASSPIDH0.996unsp

LmjF.31.2020      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India