LmjF.32.0390 | 19S proteasome non-atpase subunit 8

_IDPredictionOTHERSPmTPCS_Position
LmjF.32.0390OTHER0.9999800.0000190.000001
No Results

  • Fasta :-

    >LmjF.32.0390 MSNDPKPTKPDPRVANNDVASDDGSDGKGDVAAPPAFLPTAGRVEVHPLVLLSLVDHYAR MNTSAVQKKRVAGLLLGRYVRDSTGMQTLDINNSFAVPFDEDPQDAGVWFFDTNYAQEMF AMHKRVLPKVKVVGWYSSGPTIQPNDMLLHLLVADRFCLNPVYCVVNTDPNNKGVPVRAY TTVQGREGTRSLEFRNIPTHLGAEEAEEIGIEHLLRDLTDSTITTLSTQVQERELSLVHL CKVLQQIEEYLKDVGNAVMPISEDVLEVLQELISLQPEIYARRSSTEMIRHTNDEAIATF LAAIARCIGALHGVIMNRRKLARELQEIKDRRARAAETRLENEKMKIEEAAKEKDTNQA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/39 Sequence name : 39 Sequence length : 359 VALUES OF COMPUTED PARAMETERS Coef20 : 2.989 CoefTot : -0.022 ChDiff : -10 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.159 1.835 0.218 0.598 MesoH : -0.726 0.329 -0.441 0.183 MuHd_075 : 21.889 13.396 4.932 4.431 MuHd_095 : 13.172 6.682 4.326 3.889 MuHd_100 : 17.895 10.492 5.438 5.013 MuHd_105 : 19.176 12.643 5.923 5.552 Hmax_075 : -1.867 0.933 -3.236 1.283 Hmax_095 : -8.200 -7.200 -4.873 -0.230 Hmax_100 : -7.800 -6.800 -4.873 -0.230 Hmax_105 : -2.400 -4.288 -3.697 -0.230 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9860 0.0140 DFMC : 0.9788 0.0212
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 359 LmjF.32.0390 MSNDPKPTKPDPRVANNDVASDDGSDGKGDVAAPPAFLPTAGRVEVHPLVLLSLVDHYARMNTSAVQKKRVAGLLLGRYV 80 RDSTGMQTLDINNSFAVPFDEDPQDAGVWFFDTNYAQEMFAMHKRVLPKVKVVGWYSSGPTIQPNDMLLHLLVADRFCLN 160 PVYCVVNTDPNNKGVPVRAYTTVQGREGTRSLEFRNIPTHLGAEEAEEIGIEHLLRDLTDSTITTLSTQVQERELSLVHL 240 CKVLQQIEEYLKDVGNAVMPISEDVLEVLQELISLQPEIYARRSSTEMIRHTNDEAIATFLAAIARCIGALHGVIMNRRK 320 LARELQEIKDRRARAAETRLENEKMKIEEAAKEKDTNQA 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ....................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ LmjF.32.0390 6 -MSNDPK|PT 0.071 . LmjF.32.0390 9 NDPKPTK|PD 0.060 . LmjF.32.0390 13 PTKPDPR|VA 0.096 . LmjF.32.0390 28 DDGSDGK|GD 0.068 . LmjF.32.0390 43 FLPTAGR|VE 0.064 . LmjF.32.0390 60 LVDHYAR|MN 0.083 . LmjF.32.0390 68 NTSAVQK|KR 0.070 . LmjF.32.0390 69 TSAVQKK|RV 0.192 . LmjF.32.0390 70 SAVQKKR|VA 0.281 . LmjF.32.0390 78 AGLLLGR|YV 0.118 . LmjF.32.0390 81 LLGRYVR|DS 0.347 . LmjF.32.0390 124 EMFAMHK|RV 0.068 . LmjF.32.0390 125 MFAMHKR|VL 0.205 . LmjF.32.0390 129 HKRVLPK|VK 0.068 . LmjF.32.0390 131 RVLPKVK|VV 0.091 . LmjF.32.0390 156 HLLVADR|FC 0.071 . LmjF.32.0390 173 NTDPNNK|GV 0.064 . LmjF.32.0390 178 NKGVPVR|AY 0.138 . LmjF.32.0390 186 YTTVQGR|EG 0.080 . LmjF.32.0390 190 QGREGTR|SL 0.097 . LmjF.32.0390 195 TRSLEFR|NI 0.194 . LmjF.32.0390 216 GIEHLLR|DL 0.137 . LmjF.32.0390 233 STQVQER|EL 0.112 . LmjF.32.0390 242 SLVHLCK|VL 0.077 . LmjF.32.0390 252 QIEEYLK|DV 0.089 . LmjF.32.0390 282 QPEIYAR|RS 0.099 . LmjF.32.0390 283 PEIYARR|SS 0.197 . LmjF.32.0390 290 SSTEMIR|HT 0.091 . LmjF.32.0390 306 FLAAIAR|CI 0.145 . LmjF.32.0390 318 HGVIMNR|RK 0.084 . LmjF.32.0390 319 GVIMNRR|KL 0.121 . LmjF.32.0390 320 VIMNRRK|LA 0.093 . LmjF.32.0390 323 NRRKLAR|EL 0.131 . LmjF.32.0390 329 RELQEIK|DR 0.058 . LmjF.32.0390 331 LQEIKDR|RA 0.120 . LmjF.32.0390 332 QEIKDRR|AR 0.130 . LmjF.32.0390 334 IKDRRAR|AA 0.481 . LmjF.32.0390 339 ARAAETR|LE 0.098 . LmjF.32.0390 344 TRLENEK|MK 0.063 . LmjF.32.0390 346 LENEKMK|IE 0.076 . LmjF.32.0390 352 KIEEAAK|EK 0.068 . LmjF.32.0390 354 EEAAKEK|DT 0.091 . ____________________________^_________________

  • Fasta :-

    >LmjF.32.0390 ATGAGCAACGATCCGAAGCCCACGAAGCCTGACCCACGTGTGGCCAACAACGACGTCGCG TCTGACGACGGCAGTGATGGGAAGGGGGATGTAGCGGCGCCCCCGGCCTTCCTTCCCACA GCGGGCCGCGTGGAAGTGCACCCGCTGGTGCTGCTGTCCCTGGTGGACCACTACGCCCGC ATGAACACCTCTGCCGTTCAGAAAAAGCGTGTGGCGGGGTTGCTGCTTGGGCGCTACGTG CGCGACTCCACAGGGATGCAGACACTCGACATCAACAACAGCTTCGCCGTCCCCTTTGAC GAAGACCCGCAGGATGCCGGCGTGTGGTTCTTCGACACGAACTACGCCCAGGAGATGTTT GCGATGCACAAACGCGTGTTACCGAAGGTGAAAGTTGTGGGATGGTACTCCTCCGGCCCC ACTATTCAGCCCAATGACATGCTGCTGCATCTTCTGGTCGCGGATCGCTTCTGTCTCAAT CCTGTCTACTGTGTAGTAAATACCGACCCAAACAACAAGGGCGTGCCGGTGCGGGCCTAC ACAACGGTGCAGGGGCGTGAGGGCACGCGCTCGCTCGAGTTCCGCAACATCCCGACCCAC CTCGGTGCGGAGGAAGCCGAGGAGATCGGCATCGAGCATCTCCTGCGCGATCTGACCGAC TCCACCATCACCACGCTCTCCACGCAGGTGCAAGAGCGGGAGCTGTCCCTGGTTCATCTG TGCAAGGTGCTTCAGCAGATAGAGGAGTACCTCAAGGATGTCGGAAACGCCGTCATGCCG ATCTCCGAGGATGTACTGGAGGTACTGCAGGAGCTGATTAGCCTGCAGCCGGAGATCTAC GCCCGCCGCTCGTCGACCGAGATGATTCGGCACACCAACGACGAGGCGATTGCGACCTTC TTAGCGGCCATCGCGCGCTGCATCGGTGCGCTGCACGGCGTCATAATGAACCGCCGCAAG CTCGCGCGAGAGCTGCAGGAAATCAAAGATCGTCGCGCCCGCGCTGCTGAGACACGGTTG GAGAACGAAAAGATGAAGATCGAGGAGGCAGCCAAGGAAAAGGACACCAACCAGGCATAG
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  • Fasta :-

    MSNDPKPTKPDPRVANNDVASDDGSDGKGDVAAPPAFLPTAGRVEVHPLVLLSLVDHYAR MNTSAVQKKRVAGLLLGRYVRDSTGMQTLDINNSFAVPFDEDPQDAGVWFFDTNYAQEMF AMHKRVLPKVKVVGWYSSGPTIQPNDMLLHLLVADRFCLNPVYCVVNTDPNNKGVPVRAY TTVQGREGTRSLEFRNIPTHLGAEEAEEIGIEHLLRDLTDSTITTLSTQVQERELSLVHL CKVLQQIEEYLKDVGNAVMPISEDVLEVLQELISLQPEIYARRSSTEMIRHTNDEAIATF LAAIARCIGALHGVIMNRRKLARELQEIKDRRARAAETRLENEKMKIEEAAKEKDTNQA

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.32.0390285 SARRSSTEMI0.998unspLmjF.32.0390285 SARRSSTEMI0.998unspLmjF.32.0390285 SARRSSTEMI0.998unspLmjF.32.039083 SYVRDSTGMQ0.997unspLmjF.32.0390284 SYARRSSTEM0.996unsp

LmjF.32.0390      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India