LmjF.32.1250 | ubiquitin hydrolase, putative

_IDPredictionOTHERSPmTPCS_Position
LmjF.32.1250OTHER1.0000000.0000000.000000
No Results

  • Fasta :-

    >LmjF.32.1250 MGGPPGSQVAQKKSNRPRNKEQEGVSKNGASAKEAAALASSNGCGVTATQAAASSSPFQP PRQPNVYTDCAPLRELYDQVRVSECGSHGSSVRGGAGRHRRREEKRRPFTLQQSFNELPY PRGIMNNSNFCFMNSMLQALMFIPSFAQLTVSVSCDAQARQLCPTLVTLGKWTLQYWKPG FTRLAMIAPTLMPRVPAGANNSNSGAPRSAVVPASQRILDGSVQEDAQEFLQKLLERVHE ELVGLEEAFQQADASEAATESEMGSIGPAATASTASGGGRTDAPDDATTSTFPKKGWTFV KGKEKLAVREHEDTRGQSKLLSSIFGGTLESHLQGKQRQRNRVSVLIERYYCLPVDVGFA PECTVEQALERTFMTERIYDSEHEKNLKKTLRLGHLPSILFLQLRRWAVTREGELVKLDN VVRVTRTLLIPRTICADDTLGNTERMYRLLSVVCHRGDAVSRGHYVTYLMHHAATPAALK VQASEPGNKDTAILRSPPGAATVILCNDANISVCPAKNMEKETVYFLVYQKTS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/255 Sequence name : 255 Sequence length : 533 VALUES OF COMPUTED PARAMETERS Coef20 : 3.033 CoefTot : -1.791 ChDiff : 12 ZoneTo : 20 KR : 5 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.729 1.524 0.252 0.551 MesoH : 0.264 0.490 -0.200 0.254 MuHd_075 : 21.487 12.537 5.776 4.347 MuHd_095 : 26.877 15.862 9.196 5.143 MuHd_100 : 24.882 15.015 8.309 5.297 MuHd_105 : 23.278 12.793 7.330 4.430 Hmax_075 : 3.733 2.333 -1.673 1.773 Hmax_095 : -3.400 -2.300 -2.851 0.760 Hmax_100 : -1.800 -0.700 -1.979 1.780 Hmax_105 : 3.967 -3.600 -0.832 1.143 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8818 0.1182 DFMC : 0.8241 0.1759
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 533 LmjF.32.1250 MGGPPGSQVAQKKSNRPRNKEQEGVSKNGASAKEAAALASSNGCGVTATQAAASSSPFQPPRQPNVYTDCAPLRELYDQV 80 RVSECGSHGSSVRGGAGRHRRREEKRRPFTLQQSFNELPYPRGIMNNSNFCFMNSMLQALMFIPSFAQLTVSVSCDAQAR 160 QLCPTLVTLGKWTLQYWKPGFTRLAMIAPTLMPRVPAGANNSNSGAPRSAVVPASQRILDGSVQEDAQEFLQKLLERVHE 240 ELVGLEEAFQQADASEAATESEMGSIGPAATASTASGGGRTDAPDDATTSTFPKKGWTFVKGKEKLAVREHEDTRGQSKL 320 LSSIFGGTLESHLQGKQRQRNRVSVLIERYYCLPVDVGFAPECTVEQALERTFMTERIYDSEHEKNLKKTLRLGHLPSIL 400 FLQLRRWAVTREGELVKLDNVVRVTRTLLIPRTICADDTLGNTERMYRLLSVVCHRGDAVSRGHYVTYLMHHAATPAALK 480 VQASEPGNKDTAILRSPPGAATVILCNDANISVCPAKNMEKETVYFLVYQKTS 560 ................................................................................ 80 ....................P........................................................... 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ..................................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ LmjF.32.1250 12 GSQVAQK|KS 0.069 . LmjF.32.1250 13 SQVAQKK|SN 0.179 . LmjF.32.1250 16 AQKKSNR|PR 0.099 . LmjF.32.1250 18 KKSNRPR|NK 0.218 . LmjF.32.1250 20 SNRPRNK|EQ 0.078 . LmjF.32.1250 27 EQEGVSK|NG 0.062 . LmjF.32.1250 33 KNGASAK|EA 0.089 . LmjF.32.1250 62 SPFQPPR|QP 0.103 . LmjF.32.1250 74 TDCAPLR|EL 0.116 . LmjF.32.1250 81 ELYDQVR|VS 0.089 . LmjF.32.1250 93 SHGSSVR|GG 0.081 . LmjF.32.1250 98 VRGGAGR|HR 0.105 . LmjF.32.1250 100 GGAGRHR|RR 0.090 . LmjF.32.1250 101 GAGRHRR|RE 0.535 *ProP* LmjF.32.1250 102 AGRHRRR|EE 0.125 . LmjF.32.1250 105 HRRREEK|RR 0.119 . LmjF.32.1250 106 RRREEKR|RP 0.245 . LmjF.32.1250 107 RREEKRR|PF 0.187 . LmjF.32.1250 122 NELPYPR|GI 0.083 . LmjF.32.1250 160 SCDAQAR|QL 0.122 . LmjF.32.1250 171 TLVTLGK|WT 0.067 . LmjF.32.1250 178 WTLQYWK|PG 0.060 . LmjF.32.1250 183 WKPGFTR|LA 0.107 . LmjF.32.1250 194 APTLMPR|VP 0.073 . LmjF.32.1250 208 SNSGAPR|SA 0.190 . LmjF.32.1250 217 VVPASQR|IL 0.084 . LmjF.32.1250 233 AQEFLQK|LL 0.074 . LmjF.32.1250 237 LQKLLER|VH 0.082 . LmjF.32.1250 280 TASGGGR|TD 0.101 . LmjF.32.1250 294 TTSTFPK|KG 0.076 . LmjF.32.1250 295 TSTFPKK|GW 0.128 . LmjF.32.1250 301 KGWTFVK|GK 0.074 . LmjF.32.1250 303 WTFVKGK|EK 0.072 . LmjF.32.1250 305 FVKGKEK|LA 0.063 . LmjF.32.1250 309 KEKLAVR|EH 0.091 . LmjF.32.1250 315 REHEDTR|GQ 0.115 . LmjF.32.1250 319 DTRGQSK|LL 0.081 . LmjF.32.1250 336 ESHLQGK|QR 0.068 . LmjF.32.1250 338 HLQGKQR|QR 0.101 . LmjF.32.1250 340 QGKQRQR|NR 0.079 . LmjF.32.1250 342 KQRQRNR|VS 0.091 . LmjF.32.1250 349 VSVLIER|YY 0.073 . LmjF.32.1250 371 VEQALER|TF 0.078 . LmjF.32.1250 377 RTFMTER|IY 0.077 . LmjF.32.1250 385 YDSEHEK|NL 0.073 . LmjF.32.1250 388 EHEKNLK|KT 0.059 . LmjF.32.1250 389 HEKNLKK|TL 0.082 . LmjF.32.1250 392 NLKKTLR|LG 0.069 . LmjF.32.1250 405 ILFLQLR|RW 0.083 . LmjF.32.1250 406 LFLQLRR|WA 0.116 . LmjF.32.1250 411 RRWAVTR|EG 0.102 . LmjF.32.1250 417 REGELVK|LD 0.063 . LmjF.32.1250 423 KLDNVVR|VT 0.079 . LmjF.32.1250 426 NVVRVTR|TL 0.152 . LmjF.32.1250 432 RTLLIPR|TI 0.077 . LmjF.32.1250 445 TLGNTER|MY 0.080 . LmjF.32.1250 448 NTERMYR|LL 0.219 . LmjF.32.1250 456 LSVVCHR|GD 0.100 . LmjF.32.1250 462 RGDAVSR|GH 0.086 . LmjF.32.1250 480 ATPAALK|VQ 0.053 . LmjF.32.1250 489 ASEPGNK|DT 0.065 . LmjF.32.1250 495 KDTAILR|SP 0.090 . LmjF.32.1250 517 ISVCPAK|NM 0.078 . LmjF.32.1250 521 PAKNMEK|ET 0.058 . LmjF.32.1250 531 YFLVYQK|TS 0.056 . ____________________________^_________________

  • Fasta :-

    >LmjF.32.1250 ATGGGTGGGCCACCGGGGTCACAGGTGGCGCAGAAGAAATCAAACCGACCACGGAACAAA GAACAGGAGGGTGTAAGCAAAAATGGTGCCAGCGCCAAGGAAGCAGCGGCGCTCGCCTCT TCCAATGGCTGTGGCGTCACAGCTACGCAGGCTGCGGCGTCGTCGTCACCGTTTCAGCCA CCACGCCAGCCTAACGTCTACACCGACTGCGCGCCGCTGCGAGAGCTGTACGACCAAGTT CGAGTGAGTGAATGTGGCTCCCACGGTAGCAGTGTCAGGGGCGGTGCTGGTCGACACCGA AGGCGGGAGGAGAAAAGGCGCCCCTTCACGCTTCAACAATCCTTCAACGAGTTGCCGTAC CCGCGTGGGATAATGAATAACAGCAACTTCTGCTTCATGAATTCGATGCTGCAGGCACTC ATGTTCATACCCTCCTTTGCGCAACTGACCGTCTCCGTCAGCTGTGATGCGCAGGCACGC CAGCTGTGCCCGACCCTGGTGACCCTTGGAAAGTGGACACTTCAGTACTGGAAGCCCGGT TTCACGCGGCTAGCGATGATAGCCCCAACGTTGATGCCACGCGTGCCTGCTGGCGCCAAC AACAGTAACAGCGGCGCTCCTCGGTCGGCCGTGGTGCCCGCCTCGCAGCGGATCCTTGAC GGCTCTGTGCAGGAGGATGCGCAGGAGTTTCTGCAGAAGTTGCTGGAGCGTGTGCATGAA GAGCTGGTGGGTCTCGAGGAAGCGTTTCAGCAGGCCGACGCCTCTGAAGCGGCTACGGAG AGTGAAATGGGGTCGATTGGCCCTGCTGCCACGGCGAGCACCGCCAGTGGTGGTGGCCGC ACCGATGCTCCGGACGACGCCACCACCTCGACCTTTCCCAAGAAGGGCTGGACCTTTGTG AAGGGAAAGGAGAAACTGGCGGTGCGGGAGCACGAGGATACGCGAGGGCAGTCAAAACTG CTCTCAAGTATCTTTGGCGGAACGCTGGAGAGCCACTTGCAAGGGAAGCAGCGCCAGCGA AACCGCGTGTCAGTGCTCATCGAGAGGTACTACTGTCTCCCCGTCGACGTTGGCTTTGCG CCGGAGTGTACTGTTGAGCAAGCTCTCGAGCGCACCTTCATGACAGAGCGCATTTATGAC AGCGAGCACGAGAAAAACCTCAAGAAGACGCTCCGCCTCGGCCATCTACCCTCCATTCTT TTTCTGCAGCTGCGCCGCTGGGCCGTGACGCGCGAGGGCGAGCTCGTGAAGCTCGACAAT GTTGTGCGTGTCACGCGCACCTTGCTGATTCCTCGTACTATCTGCGCTGATGATACACTT GGCAACACCGAGCGAATGTACCGTCTCCTGTCGGTTGTGTGCCACCGCGGTGACGCCGTT AGTCGGGGGCACTATGTCACCTACTTGATGCACCACGCTGCGACCCCAGCTGCCCTGAAG GTGCAGGCGAGTGAGCCGGGAAACAAGGATACTGCAATCCTGCGCTCGCCGCCTGGCGCG GCGACAGTGATTCTCTGCAATGACGCCAACATTTCCGTGTGTCCAGCAAAGAACATGGAG AAGGAGACCGTGTACTTTCTCGTCTACCAGAAGACAAGCTGA
  • Download Fasta

  • Fasta :-

    MGGPPGSQVAQKKSNRPRNKEQEGVSKNGASAKEAAALASSNGCGVTATQAAASSSPFQP PRQPNVYTDCAPLRELYDQVRVSECGSHGSSVRGGAGRHRRREEKRRPFTLQQSFNELPY PRGIMNNSNFCFMNSMLQALMFIPSFAQLTVSVSCDAQARQLCPTLVTLGKWTLQYWKPG FTRLAMIAPTLMPRVPAGANNSNSGAPRSAVVPASQRILDGSVQEDAQEFLQKLLERVHE ELVGLEEAFQQADASEAATESEMGSIGPAATASTASGGGRTDAPDDATTSTFPKKGWTFV KGKEKLAVREHEDTRGQSKLLSSIFGGTLESHLQGKQRQRNRVSVLIERYYCLPVDVGFA PECTVEQALERTFMTERIYDSEHEKNLKKTLRLGHLPSILFLQLRRWAVTREGELVKLDN VVRVTRTLLIPRTICADDTLGNTERMYRLLSVVCHRGDAVSRGHYVTYLMHHAATPAALK VQASEPGNKDTAILRSPPGAATVILCNDANISVCPAKNMEKETVYFLVYQKTS

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
LmjF.32.125031 SKNGASAKEA0.995unspLmjF.32.125083 SQVRVSECGS0.995unsp

LmjF.32.1250      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India